RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 KIAA0232Q92628 1395 aa4.14□□□□□ -1.75
VPS13C-203ENST00000395896 HDAC1Q13547 482 aaPredicted RBP4.14□□□□□ -1.75
VPS13C-203ENST00000395896 TOM1L2Q6ZVM7 507 aa4.14□□□□□ -1.75
VPS13C-203ENST00000395896 LRRC59Q96AG4 307 aaKnown RBP4.14□□□□□ -1.75
VPS13C-203ENST00000395896 TRIM6-TRIM34B2RNG4 842 aa4.14□□□□□ -1.75
VPS13C-203ENST00000395896 BRPF1P55201 1214 aaPredicted RBP4.13□□□□□ -1.75
VPS13C-203ENST00000395896 SKOR2Q2VWA4 1001 aaPredicted RBP4.13□□□□□ -1.75
VPS13C-203ENST00000395896 ELL2O00472 640 aaPredicted RBP4.13□□□□□ -1.75
VPS13C-203ENST00000395896 IFNL2Q8IZJ0 200 aa4.13□□□□□ -1.75
VPS13C-203ENST00000395896 ADGRL3Q9HAR2 1447 aa4.13□□□□□ -1.75
VPS13C-203ENST00000395896 BTBD11A6QL63 1104 aa4.13□□□□□ -1.75
VPS13C-203ENST00000395896 RRS1Q15050 365 aaKnown RBP4.13□□□□□ -1.75
VPS13C-203ENST00000395896 NME9Q86XW9 330 aa4.13□□□□□ -1.75
VPS13C-203ENST00000395896 EXOC6Q8TAG9 804 aa4.13□□□□□ -1.75
VPS13C-203ENST00000395896 DIAPH3Q9NSV4 1193 aa4.13□□□□□ -1.75
VPS13C-203ENST00000395896 GCP02774 474 aa4.13□□□□□ -1.75
VPS13C-203ENST00000395896 USP6P35125 1406 aa4.13□□□□□ -1.75
VPS13C-203ENST00000395896 MROH1Q8NDA8 1641 aa4.13□□□□□ -1.75
VPS13C-203ENST00000395896 TSHZ2Q9NRE2 1034 aa4.13□□□□□ -1.75
VPS13C-203ENST00000395896 RIC3Q7Z5B4 369 aa4.13□□□□□ -1.75
VPS13C-203ENST00000395896 NCOA3Q9Y6Q9 1424 aa4.13□□□□□ -1.75
VPS13C-203ENST00000395896 IFIT2P09913 472 aaKnown RBP4.13□□□□□ -1.75
VPS13C-203ENST00000395896 IP6K1Q92551 441 aa4.13□□□□□ -1.75
VPS13C-203ENST00000395896 GOLGA6L4A6NEF3 574 aa4.13□□□□□ -1.75
VPS13C-203ENST00000395896 DDX11L8A8MPP1 907 aa4.13□□□□□ -1.75
VPS13C-203ENST00000395896 SSH1Q8WYL5 1049 aa4.13□□□□□ -1.75
VPS13C-203ENST00000395896 CDC42BPGQ6DT37 1551 aa4.13□□□□□ -1.75
VPS13C-203ENST00000395896 NUCB2P80303 420 aa4.13□□□□□ -1.75
VPS13C-203ENST00000395896 ZNF652Q9Y2D9 606 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 DNAJC5Q9H3Z4 198 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 TULP4Q9NRJ4 1543 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 KIF13AQ9H1H9 1805 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 BMP2KLQ5H9B9 411 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 AKAP4Q5JQC9 854 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 KRT28Q7Z3Y7 464 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 LRRCC1Q9C099 1032 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 MAP3K19Q56UN5 1328 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 ADGRB1O14514 1584 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 L1TD1Q5T7N2 865 aaKnown RBP4.12□□□□□ -1.75
VPS13C-203ENST00000395896 TICAM2Q86XR7 235 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 DCAF5Q96JK2 942 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 EPB41L2O43491 1005 aaKnown RBP4.12□□□□□ -1.75
VPS13C-203ENST00000395896 PLEKHG5O94827 1062 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 KIF6Q6ZMV9 814 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 TRIM27P14373 513 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 KIF20BQ96Q89 1820 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 RABEP1Q15276 862 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 CNTROBQ8N137 903 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 KIF1BPQ96EK5 621 aa4.12□□□□□ -1.75
VPS13C-203ENST00000395896 CDC45O75419 566 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 GLRX3O76003 335 aaKnown RBP4.11□□□□□ -1.75
VPS13C-203ENST00000395896 BACH2Q9BYV9 841 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 PNPLA6Q8IY17 1366 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 PSMA5P28066 241 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 FLIIQ13045 1269 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 CCDC184Q52MB2 194 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 EMILIN1Q9Y6C2 1016 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 PLIN1O60240 522 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 CABP4P57796 275 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 ANKRD1Q15327 319 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 CCDC9Q9Y3X0 531 aaKnown RBP4.11□□□□□ -1.75
VPS13C-203ENST00000395896 FMNL2Q96PY5 1086 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 DCCP43146 1447 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 ERBB4Q15303 1308 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 NOB1Q9ULX3 412 aaKnown RBP4.11□□□□□ -1.75
VPS13C-203ENST00000395896 EIF2S2P20042 333 aaKnown RBP4.11□□□□□ -1.75
VPS13C-203ENST00000395896 TRDNQ13061 729 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 ZSCAN25Q6NSZ9 544 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 CHMP3Q9Y3E7 222 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 NCAPD2Q15021 1401 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 DHX16O60231 1041 aaKnown RBP4.11□□□□□ -1.75
VPS13C-203ENST00000395896 AMOTL1Q8IY63 956 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 CEP170BQ9Y4F5 1589 aaPredicted RBP4.11□□□□□ -1.75
VPS13C-203ENST00000395896 HSP90AB2PQ58FF8 381 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 PANK1Q8TE04 598 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 SNRPA1P09661 255 aaKnown RBP4.11□□□□□ -1.75
VPS13C-203ENST00000395896 MAP3K5Q99683 1374 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 NPHP4O75161 1426 aaPredicted RBP4.11□□□□□ -1.75
VPS13C-203ENST00000395896 ANKRD26Q9UPS8 1709 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 CIZ1Q9ULV3 898 aaPredicted RBP4.11□□□□□ -1.75
VPS13C-203ENST00000395896 AKAP2Q9Y2D5 859 aa4.11□□□□□ -1.75
VPS13C-203ENST00000395896 GOLGA6L6A8MZA4 724 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 KRT32Q14532 448 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 SURF6O75683 361 aaKnown RBP4.1□□□□□ -1.75
VPS13C-203ENST00000395896 LTKP29376 864 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 CHD1LQ86WJ1 897 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 RSPH6AQ9H0K4 717 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 PTPRMP28827 1452 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 SLIT1O75093 1534 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 ZNF521Q96K83 1311 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 SRGAP3O43295 1099 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 EIF4A2Q14240 407 aaKnown RBP4.1□□□□□ -1.75
VPS13C-203ENST00000395896 C22orf23Q9BZE7 217 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 CPSF1Q10570 1443 aaKnown RBP4.1□□□□□ -1.75
VPS13C-203ENST00000395896 BCAR3O75815 825 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 USP31Q70CQ4 1352 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 CCDC57Q2TAC2 916 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 EXOC5O00471 708 aa4.1□□□□□ -1.75
VPS13C-203ENST00000395896 TSR2Q969E8 191 aaKnown RBP4.1□□□□□ -1.75
VPS13C-203ENST00000395896 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.1□□□□□ -1.751e-6■■■□□ 18.9
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms