RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 FYB1O15117 783 aa17.02■□□□□ 0.32
RTF1-201ENST00000389629 SDF4Q9BRK5 362 aa17.02■□□□□ 0.32
RTF1-201ENST00000389629 NOLC1Q14978 699 aaKnown RBP eCLIP17.02■□□□□ 0.31
RTF1-201ENST00000389629 WAPLQ7Z5K2 1190 aa17.02■□□□□ 0.31
RTF1-201ENST00000389629 TSPYL6Q8N831 410 aa17.02■□□□□ 0.31
RTF1-201ENST00000389629 RNF20Q5VTR2 975 aa17.01■□□□□ 0.31
RTF1-201ENST00000389629 ZGPATQ8N5A5 531 aaKnown RBP17.01■□□□□ 0.31
RTF1-201ENST00000389629 NME9Q86XW9 330 aa17.01■□□□□ 0.31
RTF1-201ENST00000389629 HSP90AB4PQ58FF6 505 aa17.01■□□□□ 0.31
RTF1-201ENST00000389629 RAPGEF3O95398 923 aa17.01■□□□□ 0.31
RTF1-201ENST00000389629 MX1P20591 662 aa17■□□□□ 0.31
RTF1-201ENST00000389629 CCDC183Q5T5S1 534 aa17■□□□□ 0.31
RTF1-201ENST00000389629 MRPL50Q8N5N7 158 aaKnown RBP17■□□□□ 0.31
RTF1-201ENST00000389629 NUTM1Q86Y26 1132 aa17■□□□□ 0.31
RTF1-201ENST00000389629 SLC52A1Q9NWF4 448 aa17■□□□□ 0.31
RTF1-201ENST00000389629 CLASRPQ8N2M8 674 aaKnown RBP17■□□□□ 0.31
RTF1-201ENST00000389629 TRAPPC8Q9Y2L5 1435 aa17■□□□□ 0.31
RTF1-201ENST00000389629 NUTM2GQ5VZR2 741 aa16.99■□□□□ 0.31
RTF1-201ENST00000389629 ANKRD36BQ8N2N9 1353 aa16.99■□□□□ 0.31
RTF1-201ENST00000389629 RTEL1-TNFRSF6BF6WH68 1400 aa16.99■□□□□ 0.31
RTF1-201ENST00000389629 FSD2A1L4K1 749 aa16.99■□□□□ 0.31
RTF1-201ENST00000389629 SMC2O95347 1197 aa16.99■□□□□ 0.31
RTF1-201ENST00000389629 STK3Q13188 491 aa16.99■□□□□ 0.31
RTF1-201ENST00000389629 G3BP1Q13283 466 aaKnown RBP eCLIP16.99■□□□□ 0.31
RTF1-201ENST00000389629 CWC27Q6UX04 472 aaKnown RBP16.99■□□□□ 0.31
RTF1-201ENST00000389629 ARHGAP45Q92619 1136 aa16.99■□□□□ 0.31
RTF1-201ENST00000389629 PRIMPOLQ96LW4 560 aa16.99■□□□□ 0.31
RTF1-201ENST00000389629 LARP1BQ659C4 914 aaKnown RBP16.99■□□□□ 0.31
RTF1-201ENST00000389629 TMX3Q96JJ7 454 aa16.99■□□□□ 0.31
RTF1-201ENST00000389629 DDX54Q8TDD1 881 aaKnown RBP16.98■□□□□ 0.31
RTF1-201ENST00000389629 NUP62CLQ9H1M0 184 aa16.98■□□□□ 0.31
RTF1-201ENST00000389629 NOL7Q9UMY1 257 aaKnown RBP16.98■□□□□ 0.31
RTF1-201ENST00000389629 KRT85P78386 507 aa16.98■□□□□ 0.31
RTF1-201ENST00000389629 C8orf58Q8NAV2 365 aa16.98■□□□□ 0.31
RTF1-201ENST00000389629 BBXQ8WY36 941 aaPredicted RBP16.98■□□□□ 0.31
RTF1-201ENST00000389629 CCDC94Q9BW85 323 aaPredicted RBP16.98■□□□□ 0.31
RTF1-201ENST00000389629 TULP1O00294 542 aaPredicted RBP16.97■□□□□ 0.31
RTF1-201ENST00000389629 VAMP4O75379 141 aa16.97■□□□□ 0.31
RTF1-201ENST00000389629 TSC1Q92574 1164 aa16.97■□□□□ 0.31
RTF1-201ENST00000389629 ZBTB7BO15156 539 aaPredicted RBP16.97■□□□□ 0.31
RTF1-201ENST00000389629 SRCIN1Q9C0H9 1055 aa16.97■□□□□ 0.31
RTF1-201ENST00000389629 CYP46A1Q9Y6A2 500 aa16.97■□□□□ 0.31
RTF1-201ENST00000389629 PBRM1Q86U86 1689 aa16.97■□□□□ 0.31
RTF1-201ENST00000389629 TNNT1P13805 278 aa16.96■□□□□ 0.31
RTF1-201ENST00000389629 HS1BP3Q53T59 392 aa16.96■□□□□ 0.31
RTF1-201ENST00000389629 TRIM35Q9UPQ4 493 aa16.96■□□□□ 0.31
RTF1-201ENST00000389629 IDI1Q13907 227 aa16.96■□□□□ 0.31
RTF1-201ENST00000389629 PLEKHM2Q8IWE5 1019 aa16.96■□□□□ 0.31
RTF1-201ENST00000389629 CKAP2LQ8IYA6 745 aa16.96■□□□□ 0.31
RTF1-201ENST00000389629 MEIS3Q99687 375 aa16.96■□□□□ 0.31
RTF1-201ENST00000389629 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.96■□□□□ 0.312e-6■■■□□ 16.8
RTF1-201ENST00000389629 HDGFL1Q5TGJ6 251 aa16.96■□□□□ 0.31
RTF1-201ENST00000389629 WDR7Q9Y4E6 1490 aa16.96■□□□□ 0.3
RTF1-201ENST00000389629 KINO60870 393 aaKnown RBP16.95■□□□□ 0.3
RTF1-201ENST00000389629 GIMAP6Q6P9H5 292 aa16.95■□□□□ 0.3
RTF1-201ENST00000389629 FAM177A1Q8N128 213 aaPredicted RBP16.95■□□□□ 0.3
RTF1-201ENST00000389629 JAKMIP1Q96N16 626 aaKnown RBP16.95■□□□□ 0.3
RTF1-201ENST00000389629 PLCH2O75038 1416 aa16.95■□□□□ 0.3
RTF1-201ENST00000389629 PDCP20941 246 aa16.95■□□□□ 0.3
RTF1-201ENST00000389629 MAP3K11Q16584 847 aa16.95■□□□□ 0.3
RTF1-201ENST00000389629 CCDC83Q8IWF9 413 aa16.95■□□□□ 0.3
RTF1-201ENST00000389629 ZNF330Q9Y3S2 320 aaPredicted RBP16.95■□□□□ 0.3
RTF1-201ENST00000389629 ADGRL1O94910 1474 aa16.95■□□□□ 0.3
RTF1-201ENST00000389629 SKIDA1Q1XH10 827 aa16.95■□□□□ 0.3
RTF1-201ENST00000389629 FSD1Q9BTV5 496 aa16.95■□□□□ 0.3
RTF1-201ENST00000389629 SRGAP3O43295 1099 aa16.95■□□□□ 0.3
RTF1-201ENST00000389629 CASTP20810 708 aaKnown RBP16.94■□□□□ 0.3
RTF1-201ENST00000389629 C17orf53Q8N3J3 647 aaPredicted RBP16.94■□□□□ 0.3
RTF1-201ENST00000389629 PSMA5P28066 241 aa16.94■□□□□ 0.3
RTF1-201ENST00000389629 PHACTR3Q96KR7 559 aa16.94■□□□□ 0.3
RTF1-201ENST00000389629 EID1Q9Y6B2 187 aa16.94■□□□□ 0.3
RTF1-201ENST00000389629 PES1O00541 588 aaKnown RBP16.94■□□□□ 0.3
RTF1-201ENST00000389629 PDILTQ8N807 584 aa16.94■□□□□ 0.3
RTF1-201ENST00000389629 SMAP1Q8IYB5 467 aaPredicted RBP16.94■□□□□ 0.3
RTF1-201ENST00000389629 AIMP1Q12904 312 aaKnown RBP16.93■□□□□ 0.3
RTF1-201ENST00000389629 ANKRD44Q8N8A2 993 aa16.93■□□□□ 0.3
RTF1-201ENST00000389629 SPATA32Q96LK8 384 aa16.93■□□□□ 0.3
RTF1-201ENST00000389629 PDRG1Q9NUG6 133 aa16.93■□□□□ 0.3
RTF1-201ENST00000389629 TRMT1Q9NXH9 659 aaKnown RBP16.93■□□□□ 0.3
RTF1-201ENST00000389629 USP26Q9BXU7 913 aa16.93■□□□□ 0.3
RTF1-201ENST00000389629 TAF3Q5VWG9 929 aa16.93■□□□□ 0.3
RTF1-201ENST00000389629 AEBP1Q8IUX7 1158 aa16.93■□□□□ 0.3
RTF1-201ENST00000389629 NAT10Q9H0A0 1025 aaKnown RBP16.93■□□□□ 0.3
RTF1-201ENST00000389629 NLRP6P59044 892 aa16.93■□□□□ 0.3
RTF1-201ENST00000389629 OTUD7AQ8TE49 926 aaPredicted RBP16.93■□□□□ 0.3
RTF1-201ENST00000389629 DCTPP1Q9H773 170 aa16.93■□□□□ 0.3
RTF1-201ENST00000389629 C1orf141Q5JVX7 400 aa16.92■□□□□ 0.3
RTF1-201ENST00000389629 NUDT16Q96DE0 195 aaKnown RBP16.92■□□□□ 0.3
RTF1-201ENST00000389629 PTPN14Q15678 1187 aa16.92■□□□□ 0.3
RTF1-201ENST00000389629 ABCC2Q92887 1545 aa16.92■□□□□ 0.3
RTF1-201ENST00000389629 NEXNQ0ZGT2 675 aa16.91■□□□□ 0.3
RTF1-201ENST00000389629 USP48Q86UV5 1035 aa16.91■□□□□ 0.3
RTF1-201ENST00000389629 CEP170Q5SW79 1584 aa16.91■□□□□ 0.3
RTF1-201ENST00000389629 ZNF692Q9BU19 519 aaPredicted RBP16.91■□□□□ 0.3
RTF1-201ENST00000389629 PDE1AP54750 535 aa16.9■□□□□ 0.3
RTF1-201ENST00000389629 KRT24Q2M2I5 525 aa16.9■□□□□ 0.3
RTF1-201ENST00000389629 KDM5DQ9BY66 1539 aa16.9■□□□□ 0.3
RTF1-201ENST00000389629 ERBB4Q15303 1308 aa16.9■□□□□ 0.3
RTF1-201ENST00000389629 CPLX1O14810 134 aa16.9■□□□□ 0.3
RTF1-201ENST00000389629 LRRFIP2Q9Y608 721 aaKnown RBP16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms