RNA–Protein interactions for RNA: ENST00000379340.9

POLR2J3-201, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 1 (best)

Gene POLR2J3, Length 1,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-201ENST00000379340 ERICH6Q7L0X2 663 aa13.38□□□□□ -0.27
POLR2J3-201ENST00000379340 CCDC125Q86Z20 511 aa13.38□□□□□ -0.27
POLR2J3-201ENST00000379340 SSH1Q8WYL5 1049 aa13.38□□□□□ -0.27
POLR2J3-201ENST00000379340 GJD4Q96KN9 370 aaPredicted RBP13.38□□□□□ -0.27
POLR2J3-201ENST00000379340 BCL2L13Q9BXK5 485 aa13.38□□□□□ -0.27
POLR2J3-201ENST00000379340 GLI3P10071 1580 aa13.38□□□□□ -0.27
POLR2J3-201ENST00000379340 ATF7IPQ6VMQ6 1270 aa13.37□□□□□ -0.27
POLR2J3-201ENST00000379340 DDX19BQ9UMR2 479 aa13.37□□□□□ -0.27
POLR2J3-201ENST00000379340 MARF1Q9Y4F3 1742 aaKnown RBP13.37□□□□□ -0.27
POLR2J3-201ENST00000379340 VIRMAQ69YN4 1812 aaKnown RBP13.37□□□□□ -0.27
POLR2J3-201ENST00000379340 RLBP1P12271 317 aa13.37□□□□□ -0.27
POLR2J3-201ENST00000379340 HAP1P54257 671 aaPredicted RBP13.37□□□□□ -0.27
POLR2J3-201ENST00000379340 CFAP44Q96MT7 982 aa13.37□□□□□ -0.27
POLR2J3-201ENST00000379340 FAM161AQ3B820 660 aa13.36□□□□□ -0.27
POLR2J3-201ENST00000379340 IPO9Q96P70 1041 aaKnown RBP13.36□□□□□ -0.27
POLR2J3-201ENST00000379340 CHMP4BQ9H444 224 aaKnown RBP13.36□□□□□ -0.27
POLR2J3-201ENST00000379340 RWDD1Q9H446 243 aaPredicted RBP13.36□□□□□ -0.27
POLR2J3-201ENST00000379340 PXDNQ92626 1479 aa13.35□□□□□ -0.27
POLR2J3-201ENST00000379340 TRIM27P14373 513 aa13.35□□□□□ -0.27
POLR2J3-201ENST00000379340 ARHGAP45Q92619 1136 aa13.35□□□□□ -0.27
POLR2J3-201ENST00000379340 BRWD3Q6RI45 1802 aa13.35□□□□□ -0.27
POLR2J3-201ENST00000379340 LRP5O75197 1615 aa13.34□□□□□ -0.27
POLR2J3-201ENST00000379340 MAP3K19Q56UN5 1328 aa13.34□□□□□ -0.27
POLR2J3-201ENST00000379340 IGHDP01880 384 aa13.34□□□□□ -0.27
POLR2J3-201ENST00000379340 SULT6B1Q6IMI4 303 aa13.34□□□□□ -0.27
POLR2J3-201ENST00000379340 NOB1Q9ULX3 412 aaKnown RBP13.34□□□□□ -0.27
POLR2J3-201ENST00000379340 RTL1A6NKG5 1358 aa13.34□□□□□ -0.27
POLR2J3-201ENST00000379340 KDRP35968 1356 aa13.34□□□□□ -0.27
POLR2J3-201ENST00000379340 PSDA5PKW4 1024 aaPredicted RBP13.33□□□□□ -0.28
POLR2J3-201ENST00000379340 TNNQ9UQP3 1299 aa13.33□□□□□ -0.28
POLR2J3-201ENST00000379340 FOXO3O43524 673 aa13.32□□□□□ -0.28
POLR2J3-201ENST00000379340 VAMP4O75379 141 aa13.32□□□□□ -0.28
POLR2J3-201ENST00000379340 HSP90AB2PQ58FF8 381 aa13.32□□□□□ -0.28
POLR2J3-201ENST00000379340 MBIPQ9NS73 344 aa13.32□□□□□ -0.28
POLR2J3-201ENST00000379340 PHF8Q9UPP1 1060 aa13.32□□□□□ -0.28
POLR2J3-201ENST00000379340 NOP58Q9Y2X3 529 aaKnown RBP13.32□□□□□ -0.28
POLR2J3-201ENST00000379340 LAS1LQ9Y4W2 734 aaKnown RBP13.32□□□□□ -0.28
POLR2J3-201ENST00000379340 AMPHP49418 695 aa13.32□□□□□ -0.28
POLR2J3-201ENST00000379340 NLRP6P59044 892 aa13.32□□□□□ -0.28
POLR2J3-201ENST00000379340 ESCO1Q5FWF5 840 aa13.32□□□□□ -0.28
POLR2J3-201ENST00000379340 PCDHB15Q9Y5E8 787 aa13.32□□□□□ -0.28
POLR2J3-201ENST00000379340 SLIT2O94813 1529 aa13.31□□□□□ -0.28
POLR2J3-201ENST00000379340 IGSF1Q8N6C5 1336 aa13.31□□□□□ -0.28
POLR2J3-201ENST00000379340 KIAA0232Q92628 1395 aa13.31□□□□□ -0.28
POLR2J3-201ENST00000379340 AEBP1Q8IUX7 1158 aa13.31□□□□□ -0.28
POLR2J3-201ENST00000379340 MRPL50Q8N5N7 158 aaKnown RBP13.31□□□□□ -0.28
POLR2J3-201ENST00000379340 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.31□□□□□ -0.28
POLR2J3-201ENST00000379340 PHRF1Q9P1Y6 1649 aaKnown RBP13.31□□□□□ -0.28
POLR2J3-201ENST00000379340 RGS3P49796 1198 aa13.3□□□□□ -0.28
POLR2J3-201ENST00000379340 HDAC1Q13547 482 aaPredicted RBP13.3□□□□□ -0.28
POLR2J3-201ENST00000379340 TWISTNBQ3B726 338 aaPredicted RBP13.3□□□□□ -0.28
POLR2J3-201ENST00000379340 UNC5CLQ8IV45 518 aa13.3□□□□□ -0.28
POLR2J3-201ENST00000379340 ITPRIPQ8IWB1 547 aa13.3□□□□□ -0.28
POLR2J3-201ENST00000379340 SEPT12Q8IYM1 358 aa13.3□□□□□ -0.28
POLR2J3-201ENST00000379340 DDRGK1Q96HY6 314 aa13.3□□□□□ -0.28
POLR2J3-201ENST00000379340 C8orf34Q49A92 452 aa13.29□□□□□ -0.28
POLR2J3-201ENST00000379340 GAS2L2Q8NHY3 880 aa13.29□□□□□ -0.28
POLR2J3-201ENST00000379340 THUMPD2Q9BTF0 503 aaKnown RBP13.29□□□□□ -0.28
POLR2J3-201ENST00000379340 ZBTB47Q9UFB7 747 aaPredicted RBP13.29□□□□□ -0.28
POLR2J3-201ENST00000379340 NPHP3Q7Z494 1330 aa13.29□□□□□ -0.28
POLR2J3-201ENST00000379340 LTN1O94822 1766 aa13.29□□□□□ -0.28
POLR2J3-201ENST00000379340 KIF1AQ12756 1690 aa13.29□□□□□ -0.28
POLR2J3-201ENST00000379340 HTATSF1O43719 755 aaKnown RBP13.28□□□□□ -0.28
POLR2J3-201ENST00000379340 SKAP1Q86WV1 359 aa13.28□□□□□ -0.28
POLR2J3-201ENST00000379340 TMEM57Q8N5G2 664 aa13.28□□□□□ -0.28
POLR2J3-201ENST00000379340 ABTB2Q8N961 1025 aa13.28□□□□□ -0.28
POLR2J3-201ENST00000379340 API5Q9BZZ5 524 aaKnown RBP13.28□□□□□ -0.28
POLR2J3-201ENST00000379340 LRRC37A3O60309 1634 aa13.28□□□□□ -0.28
POLR2J3-201ENST00000379340 CHL1O00533 1208 aa13.28□□□□□ -0.28
POLR2J3-201ENST00000379340 HOXC9P31274 260 aa13.28□□□□□ -0.28
POLR2J3-201ENST00000379340 CRB1P82279 1406 aa13.27□□□□□ -0.29
POLR2J3-201ENST00000379340 FAM83GA6ND36 823 aa13.27□□□□□ -0.29
POLR2J3-201ENST00000379340 ZBTB40Q9NUA8 1239 aa13.27□□□□□ -0.29
POLR2J3-201ENST00000379340 NFAT5O94916 1531 aa13.27□□□□□ -0.29
POLR2J3-201ENST00000379340 SOX12O15370 315 aa13.26□□□□□ -0.29
POLR2J3-201ENST00000379340 NPM2Q86SE8 214 aaKnown RBP13.26□□□□□ -0.29
POLR2J3-201ENST00000379340 TSPYL6Q8N831 410 aa13.26□□□□□ -0.29
POLR2J3-201ENST00000379340 KCNH5Q8NCM2 988 aa13.26□□□□□ -0.29
POLR2J3-201ENST00000379340 RTF1Q92541 710 aaKnown RBP13.26□□□□□ -0.29
POLR2J3-201ENST00000379340 EYA1Q99502 592 aa13.26□□□□□ -0.29
POLR2J3-201ENST00000379340 PDZRN3Q9UPQ7 1066 aa13.26□□□□□ -0.29
POLR2J3-201ENST00000379340 ABCC4O15439 1325 aa13.26□□□□□ -0.29
POLR2J3-201ENST00000379340 PLEKHG5O94827 1062 aa13.25□□□□□ -0.29
POLR2J3-201ENST00000379340 PAK3O75914 559 aaPredicted RBP13.24□□□□□ -0.29
POLR2J3-201ENST00000379340 SF3B2Q13435 895 aaKnown RBP13.24□□□□□ -0.29
POLR2J3-201ENST00000379340 C8orf58Q8NAV2 365 aa13.24□□□□□ -0.29
POLR2J3-201ENST00000379340 CABLES1Q8TDN4 633 aa13.24□□□□□ -0.29
POLR2J3-201ENST00000379340 SPATA31A3Q5VYP0 1347 aa13.24□□□□□ -0.29
POLR2J3-201ENST00000379340 SLIT3O75094 1523 aa13.24□□□□□ -0.29
POLR2J3-201ENST00000379340 DCTN1Q14203 1278 aa13.24□□□□□ -0.29
POLR2J3-201ENST00000379340 MTHFSDQ2M296 383 aaKnown RBP13.24□□□□□ -0.29
POLR2J3-201ENST00000379340 SMC5Q8IY18 1101 aa13.24□□□□□ -0.29
POLR2J3-201ENST00000379340 BABAM1Q9NWV8 329 aa13.24□□□□□ -0.29
POLR2J3-201ENST00000379340 SOS1Q07889 1333 aaPredicted RBP13.23□□□□□ -0.29
POLR2J3-201ENST00000379340 ONECUT3O60422 494 aaPredicted RBP13.23□□□□□ -0.29
POLR2J3-201ENST00000379340 PSME1Q06323 249 aa13.23□□□□□ -0.29
POLR2J3-201ENST00000379340 VPS72Q15906 364 aa13.23□□□□□ -0.29
POLR2J3-201ENST00000379340 KRT27Q7Z3Y8 459 aa13.23□□□□□ -0.29
POLR2J3-201ENST00000379340 IP6K1Q92551 441 aa13.23□□□□□ -0.29
POLR2J3-201ENST00000379340 TRPM3Q9HCF6 1732 aaPredicted RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms