RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 CEP57L1Q8IYX8 460 aa12.43□□□□□ -0.42
RTN3-206ENST00000377819 CEP164Q9UPV0 1460 aa12.43□□□□□ -0.42
RTN3-206ENST00000377819 PPP1R14CQ8TAE6 165 aa12.43□□□□□ -0.42
RTN3-206ENST00000377819 NUP133Q8WUM0 1156 aa12.43□□□□□ -0.42
RTN3-206ENST00000377819 MAP3K1Q13233 1512 aa12.43□□□□□ -0.42
RTN3-206ENST00000377819 ADAMTS12P58397 1594 aa12.43□□□□□ -0.42
RTN3-206ENST00000377819 FAM107BQ9H098 131 aa12.42□□□□□ -0.42
RTN3-206ENST00000377819 ZSCAN25Q6NSZ9 544 aa12.42□□□□□ -0.42
RTN3-206ENST00000377819 UBAC1Q9BSL1 405 aa12.42□□□□□ -0.42
RTN3-206ENST00000377819 KRT85P78386 507 aa12.42□□□□□ -0.42
RTN3-206ENST00000377819 MRPS9P82933 396 aaKnown RBP12.42□□□□□ -0.42
RTN3-206ENST00000377819 SPC24Q8NBT2 197 aa12.42□□□□□ -0.42
RTN3-206ENST00000377819 KIF20AO95235 890 aa12.42□□□□□ -0.42
RTN3-206ENST00000377819 MPHOSPH8Q99549 860 aa12.42□□□□□ -0.42
RTN3-206ENST00000377819 TNMDQ9H2S6 317 aa12.42□□□□□ -0.42
RTN3-206ENST00000377819 MCM3P25205 808 aa12.41□□□□□ -0.42
RTN3-206ENST00000377819 AAMPQ13685 434 aa12.41□□□□□ -0.42
RTN3-206ENST00000377819 SEPT6Q14141 434 aa12.41□□□□□ -0.42
RTN3-206ENST00000377819 RBM42Q9BTD8 480 aaKnown RBP12.41□□□□□ -0.42
RTN3-206ENST00000377819 SERPINA10Q9UK55 444 aa12.41□□□□□ -0.42
RTN3-206ENST00000377819 IKBKGQ9Y6K9 419 aa12.41□□□□□ -0.42
RTN3-206ENST00000377819 MAP3K9P80192 1104 aa12.41□□□□□ -0.42
RTN3-206ENST00000377819 CACNA2D4Q7Z3S7 1137 aa12.41□□□□□ -0.42
RTN3-206ENST00000377819 GTPBP4Q9BZE4 634 aaKnown RBP12.41□□□□□ -0.42
RTN3-206ENST00000377819 ZNF287Q9HBT7 754 aa12.41□□□□□ -0.42
RTN3-206ENST00000377819 TTC39AQ5SRH9 613 aa12.4□□□□□ -0.42
RTN3-206ENST00000377819 FERMT2Q96AC1 680 aa12.4□□□□□ -0.42
RTN3-206ENST00000377819 USP5P45974 858 aa12.4□□□□□ -0.42
RTN3-206ENST00000377819 FKBP15Q5T1M5 1219 aa12.4□□□□□ -0.42
RTN3-206ENST00000377819 AEBP1Q8IUX7 1158 aa12.4□□□□□ -0.42
RTN3-206ENST00000377819 SMTNL1A8MU46 457 aa12.4□□□□□ -0.43
RTN3-206ENST00000377819 KIF2AO00139 706 aaPredicted RBP12.4□□□□□ -0.43
RTN3-206ENST00000377819 APAF1O14727 1248 aa12.4□□□□□ -0.43
RTN3-206ENST00000377819 GOLGA3Q08378 1498 aa12.39□□□□□ -0.43
RTN3-206ENST00000377819 KIF4AO95239 1232 aa12.39□□□□□ -0.43
RTN3-206ENST00000377819 FILIP1Q7Z7B0 1213 aa12.39□□□□□ -0.43
RTN3-206ENST00000377819 DDX11Q96FC9 970 aa12.39□□□□□ -0.43
RTN3-206ENST00000377819 RAPGEF2Q9Y4G8 1499 aa12.39□□□□□ -0.43
RTN3-206ENST00000377819 FGFR1OPO95684 399 aaKnown RBP12.39□□□□□ -0.43
RTN3-206ENST00000377819 CYP46A1Q9Y6A2 500 aa12.39□□□□□ -0.43
RTN3-206ENST00000377819 WASF1Q92558 559 aa12.39□□□□□ -0.43
RTN3-206ENST00000377819 DDX12PQ92771 950 aa12.39□□□□□ -0.43
RTN3-206ENST00000377819 RAB34Q9BZG1 259 aa12.39□□□□□ -0.43
RTN3-206ENST00000377819 UPF3BQ9BZI7 483 aaKnown RBP12.39□□□□□ -0.43
RTN3-206ENST00000377819 MKRN1Q9UHC7 482 aaKnown RBP12.39□□□□□ -0.43
RTN3-206ENST00000377819 DDX46Q7L014 1031 aaKnown RBP12.38□□□□□ -0.43
RTN3-206ENST00000377819 PRPF31Q8WWY3 499 aaKnown RBP12.38□□□□□ -0.43
RTN3-206ENST00000377819 GOPCQ9HD26 462 aa12.38□□□□□ -0.43
RTN3-206ENST00000377819 CTNNA3Q9UI47 895 aa12.38□□□□□ -0.43
RTN3-206ENST00000377819 PRPF40AO75400 957 aaKnown RBP12.38□□□□□ -0.43
RTN3-206ENST00000377819 RNF187Q5TA31 235 aaPredicted RBP12.38□□□□□ -0.43
RTN3-206ENST00000377819 BBXQ8WY36 941 aaPredicted RBP12.38□□□□□ -0.43
RTN3-206ENST00000377819 NAA15Q9BXJ9 866 aaKnown RBP12.38□□□□□ -0.43
RTN3-206ENST00000377819 ARAP1Q96P48 1450 aa12.38□□□□□ -0.43
RTN3-206ENST00000377819 ANKRD30AQ9BXX3 1397 aa12.37□□□□□ -0.43
RTN3-206ENST00000377819 TSG101Q99816 390 aa12.37□□□□□ -0.43
RTN3-206ENST00000377819 USO1O60763 962 aaKnown RBP12.37□□□□□ -0.43
RTN3-206ENST00000377819 ANAPC4Q9UJX5 808 aa12.37□□□□□ -0.43
RTN3-206ENST00000377819 PDIA4P13667 645 aaKnown RBP12.37□□□□□ -0.43
RTN3-206ENST00000377819 CCDC6Q16204 474 aa12.37□□□□□ -0.43
RTN3-206ENST00000377819 CEP135Q66GS9 1140 aa12.37□□□□□ -0.43
RTN3-206ENST00000377819 IPO4Q8TEX9 1081 aaKnown RBP12.37□□□□□ -0.43
RTN3-206ENST00000377819 CFAP100Q494V2 611 aa12.37□□□□□ -0.43
RTN3-206ENST00000377819 MPHOSPH9Q99550 1183 aa12.37□□□□□ -0.43
RTN3-206ENST00000377819 KIF27Q86VH2 1401 aa12.36□□□□□ -0.43
RTN3-206ENST00000377819 KIF5CO60282 957 aa12.36□□□□□ -0.43
RTN3-206ENST00000377819 CRBNQ96SW2 442 aa12.36□□□□□ -0.43
RTN3-206ENST00000377819 NAP1L3Q99457 506 aaPredicted RBP12.36□□□□□ -0.43
RTN3-206ENST00000377819 MYBBP1AQ9BQG0 1328 aaKnown RBP12.36□□□□□ -0.43
RTN3-206ENST00000377819 SH3BP5O60239 455 aa12.36□□□□□ -0.43
RTN3-206ENST00000377819 TRAK2O60296 914 aa12.36□□□□□ -0.43
RTN3-206ENST00000377819 TDO2P48775 406 aa12.36□□□□□ -0.43
RTN3-206ENST00000377819 CEP131Q9UPN4 1083 aa12.36□□□□□ -0.43
RTN3-206ENST00000377819 MINK1Q8N4C8 1332 aaPredicted RBP12.36□□□□□ -0.43
RTN3-206ENST00000377819 CCDC178Q5BJE1 867 aa12.36□□□□□ -0.43
RTN3-206ENST00000377819 FAM114A1Q8IWE2 563 aa12.36□□□□□ -0.43
RTN3-206ENST00000377819 HLTFQ14527 1009 aaKnown RBP eCLIP12.36□□□□□ -0.43
RTN3-206ENST00000377819 KIF4BQ2VIQ3 1234 aa12.36□□□□□ -0.43
RTN3-206ENST00000377819 IQCGQ9H095 443 aaKnown RBP12.36□□□□□ -0.43
RTN3-206ENST00000377819 PANK3Q9H999 370 aa12.36□□□□□ -0.43
RTN3-206ENST00000377819 MAP4K4O95819 1239 aaPredicted RBP12.35□□□□□ -0.43
RTN3-206ENST00000377819 CCDC30Q5VVM6 783 aa12.35□□□□□ -0.43
RTN3-206ENST00000377819 NOL3O60936 208 aaKnown RBP12.35□□□□□ -0.43
RTN3-206ENST00000377819 LMAN1P49257 510 aa12.35□□□□□ -0.43
RTN3-206ENST00000377819 LARP1BQ659C4 914 aaKnown RBP12.35□□□□□ -0.43
RTN3-206ENST00000377819 CCDC83Q8IWF9 413 aa12.35□□□□□ -0.43
RTN3-206ENST00000377819 TSHZ2Q9NRE2 1034 aa12.35□□□□□ -0.43
RTN3-206ENST00000377819 WDR33Q9C0J8 1336 aaKnown RBP12.35□□□□□ -0.43
RTN3-206ENST00000377819 ZSCAN12O43309 604 aa12.35□□□□□ -0.43
RTN3-206ENST00000377819 TTLL12Q14166 644 aaPredicted RBP12.35□□□□□ -0.43
RTN3-206ENST00000377819 MAP7D1Q3KQU3 841 aa12.35□□□□□ -0.43
RTN3-206ENST00000377819 CCDC14Q49A88 953 aa12.35□□□□□ -0.43
RTN3-206ENST00000377819 EXOC6Q8TAG9 804 aa12.35□□□□□ -0.43
RTN3-206ENST00000377819 UBA5Q9GZZ9 404 aa12.35□□□□□ -0.43
RTN3-206ENST00000377819 DNAJC5BQ9UF47 199 aa12.35□□□□□ -0.43
RTN3-206ENST00000377819 TMCO5BA8MYB1 307 aa12.35□□□□□ -0.43
RTN3-206ENST00000377819 PSMC4P43686 418 aa12.35□□□□□ -0.43
RTN3-206ENST00000377819 RPUSD2Q8IZ73 545 aaKnown RBP12.35□□□□□ -0.43
RTN3-206ENST00000377819 TTC16Q8NEE8 873 aa12.35□□□□□ -0.43
RTN3-206ENST00000377819 PLVAPQ9BX97 442 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms