RNA–Protein interactions for RNA: ENST00000377507.7

TNFRSF9-201, Transcript of TNF receptor superfamily member 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF9, Length 1,923 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF9-201ENST00000377507 MCM10Q7L590 875 aa14.66□□□□□ -0.06
TNFRSF9-201ENST00000377507 AMOTL2Q9Y2J4 779 aa14.66□□□□□ -0.06
TNFRSF9-201ENST00000377507 EID1Q9Y6B2 187 aa14.66□□□□□ -0.06
TNFRSF9-201ENST00000377507 MAP3K19Q56UN5 1328 aa14.66□□□□□ -0.06
TNFRSF9-201ENST00000377507 KRT24Q2M2I5 525 aa14.66□□□□□ -0.06
TNFRSF9-201ENST00000377507 PLEKHM2Q8IWE5 1019 aa14.66□□□□□ -0.06
TNFRSF9-201ENST00000377507 SBNO1A3KN83 1393 aa14.65□□□□□ -0.06
TNFRSF9-201ENST00000377507 EIF5BO60841 1220 aaKnown RBP14.65□□□□□ -0.06
TNFRSF9-201ENST00000377507 SLC26A8Q96RN1 970 aa14.65□□□□□ -0.06
TNFRSF9-201ENST00000377507 FLT4P35916 1363 aa14.65□□□□□ -0.06
TNFRSF9-201ENST00000377507 NUTM2FA1L443 756 aa14.64□□□□□ -0.07
TNFRSF9-201ENST00000377507 CDC45O75419 566 aa14.64□□□□□ -0.07
TNFRSF9-201ENST00000377507 SPRYD3Q8NCJ5 442 aa14.64□□□□□ -0.07
TNFRSF9-201ENST00000377507 CIZ1Q9ULV3 898 aaPredicted RBP14.64□□□□□ -0.07
TNFRSF9-201ENST00000377507 RTL1A6NKG5 1358 aa14.64□□□□□ -0.07
TNFRSF9-201ENST00000377507 GSPT1P15170 499 aaKnown RBP14.63□□□□□ -0.07
TNFRSF9-201ENST00000377507 MTHFSDQ2M296 383 aaKnown RBP14.63□□□□□ -0.07
TNFRSF9-201ENST00000377507 CEP85Q6P2H3 762 aa14.63□□□□□ -0.07
TNFRSF9-201ENST00000377507 FMN2Q9NZ56 1722 aa14.63□□□□□ -0.07
TNFRSF9-201ENST00000377507 IGSF1Q8N6C5 1336 aa14.63□□□□□ -0.07
TNFRSF9-201ENST00000377507 DIP2AQ14689 1571 aa14.63□□□□□ -0.07
TNFRSF9-201ENST00000377507 CEBPAP49715 358 aaPredicted RBP14.62□□□□□ -0.07
TNFRSF9-201ENST00000377507 HTATSF1O43719 755 aaKnown RBP14.62□□□□□ -0.07
TNFRSF9-201ENST00000377507 TTC22Q5TAA0 569 aa14.62□□□□□ -0.07
TNFRSF9-201ENST00000377507 RIMS1Q86UR5 1692 aaKnown RBP14.62□□□□□ -0.07
TNFRSF9-201ENST00000377507 ANKARQ7Z5J8 1434 aa14.61□□□□□ -0.07
TNFRSF9-201ENST00000377507 MSH6P52701 1360 aa14.6□□□□□ -0.07
TNFRSF9-201ENST00000377507 SLC4A2P04920 1241 aa14.6□□□□□ -0.07
TNFRSF9-201ENST00000377507 XRN1Q8IZH2 1706 aaKnown RBP14.6□□□□□ -0.07
TNFRSF9-201ENST00000377507 FOXO3O43524 673 aa14.6□□□□□ -0.07
TNFRSF9-201ENST00000377507 GAS2L2Q8NHY3 880 aa14.6□□□□□ -0.07
TNFRSF9-201ENST00000377507 EYA1Q99502 592 aa14.6□□□□□ -0.07
TNFRSF9-201ENST00000377507 PIK3C2AO00443 1686 aa14.6□□□□□ -0.07
TNFRSF9-201ENST00000377507 FSD2A1L4K1 749 aa14.59□□□□□ -0.07
TNFRSF9-201ENST00000377507 L1TD1Q5T7N2 865 aaKnown RBP14.59□□□□□ -0.07
TNFRSF9-201ENST00000377507 RTF1Q92541 710 aaKnown RBP14.59□□□□□ -0.07
TNFRSF9-201ENST00000377507 MEIS3Q99687 375 aa14.59□□□□□ -0.07
TNFRSF9-201ENST00000377507 CEP170BQ9Y4F5 1589 aaPredicted RBP14.59□□□□□ -0.07
TNFRSF9-201ENST00000377507 USP54Q70EL1 1684 aa14.59□□□□□ -0.07
TNFRSF9-201ENST00000377507 DDX11L8A8MPP1 907 aa14.58□□□□□ -0.07
TNFRSF9-201ENST00000377507 THEMISQ8N1K5 641 aaPredicted RBP14.58□□□□□ -0.07
TNFRSF9-201ENST00000377507 NGDNQ8NEJ9 315 aaKnown RBP14.58□□□□□ -0.07
TNFRSF9-201ENST00000377507 K7ELQ4 463 aaPredicted RBP14.58□□□□□ -0.08
TNFRSF9-201ENST00000377507 CD2BP2O95400 341 aaKnown RBP14.58□□□□□ -0.08
TNFRSF9-201ENST00000377507 CCT4P50991 539 aaKnown RBP14.58□□□□□ -0.08
TNFRSF9-201ENST00000377507 RAB3GAP1Q15042 981 aa14.58□□□□□ -0.08
TNFRSF9-201ENST00000377507 C16orf71Q8IYS4 520 aaPredicted RBP14.58□□□□□ -0.08
TNFRSF9-201ENST00000377507 MIS18AQ9NYP9 233 aa14.58□□□□□ -0.08
TNFRSF9-201ENST00000377507 TSPYL4Q9UJ04 414 aa14.58□□□□□ -0.08
TNFRSF9-201ENST00000377507 LRRC37A3O60309 1634 aa14.58□□□□□ -0.08
TNFRSF9-201ENST00000377507 RGPD8O14715 1765 aaPredicted RBP14.57□□□□□ -0.08
TNFRSF9-201ENST00000377507 TRAK2O60296 914 aa14.57□□□□□ -0.08
TNFRSF9-201ENST00000377507 SOS1Q07889 1333 aaPredicted RBP14.57□□□□□ -0.08
TNFRSF9-201ENST00000377507 HSP90AB1P08238 724 aaKnown RBP14.56□□□□□ -0.08
TNFRSF9-201ENST00000377507 AMPHP49418 695 aa14.56□□□□□ -0.08
TNFRSF9-201ENST00000377507 OSBPL3Q9H4L5 887 aa14.56□□□□□ -0.08
TNFRSF9-201ENST00000377507 NWD1Q149M9 1564 aa14.56□□□□□ -0.08
TNFRSF9-201ENST00000377507 SOX12O15370 315 aa14.56□□□□□ -0.08
TNFRSF9-201ENST00000377507 G2E3Q7L622 706 aa14.56□□□□□ -0.08
TNFRSF9-201ENST00000377507 USP26Q9BXU7 913 aa14.56□□□□□ -0.08
TNFRSF9-201ENST00000377507 BABAM1Q9NWV8 329 aa14.56□□□□□ -0.08
TNFRSF9-201ENST00000377507 MARF1Q9Y4F3 1742 aaKnown RBP14.55□□□□□ -0.08
TNFRSF9-201ENST00000377507 HMMRO75330 724 aa14.55□□□□□ -0.08
TNFRSF9-201ENST00000377507 OTUD7AQ8TE49 926 aaPredicted RBP14.55□□□□□ -0.08
TNFRSF9-201ENST00000377507 TNPO1Q92973 898 aaKnown RBP14.55□□□□□ -0.08
TNFRSF9-201ENST00000377507 SDSP20132 328 aa14.54□□□□□ -0.08
TNFRSF9-201ENST00000377507 RABEP1Q15276 862 aa14.54□□□□□ -0.08
TNFRSF9-201ENST00000377507 RBM42Q9BTD8 480 aaKnown RBP14.54□□□□□ -0.08
TNFRSF9-201ENST00000377507 HOXC9P31274 260 aa14.54□□□□□ -0.08
TNFRSF9-201ENST00000377507 NLRP6P59044 892 aa14.54□□□□□ -0.08
TNFRSF9-201ENST00000377507 CLEC17AQ6ZS10 378 aa14.54□□□□□ -0.08
TNFRSF9-201ENST00000377507 RTN4Q9NQC3 1192 aaKnown RBP14.54□□□□□ -0.08
TNFRSF9-201ENST00000377507 GNAT3A8MTJ3 354 aa14.53□□□□□ -0.08
TNFRSF9-201ENST00000377507 GOLGA6L3A6NEY3 463 aa14.53□□□□□ -0.08
TNFRSF9-201ENST00000377507 F6X3S4 739 aa14.52□□□□□ -0.09
TNFRSF9-201ENST00000377507 SMARCA5O60264 1052 aaPredicted RBP14.52□□□□□ -0.09
TNFRSF9-201ENST00000377507 XRCC6P12956 609 aaKnown RBP eCLIP14.52□□□□□ -0.09
TNFRSF9-201ENST00000377507 CCDC30Q5VVM6 783 aa14.52□□□□□ -0.09
TNFRSF9-201ENST00000377507 FAM43AQ8N2R8 423 aa14.52□□□□□ -0.09
TNFRSF9-201ENST00000377507 GBP4Q96PP9 640 aa14.52□□□□□ -0.09
TNFRSF9-201ENST00000377507 STK31Q9BXU1 1019 aa14.52□□□□□ -0.09
TNFRSF9-201ENST00000377507 ISY1Q9ULR0 285 aaKnown RBP14.52□□□□□ -0.09
TNFRSF9-201ENST00000377507 GNAI2P04899 355 aa14.51□□□□□ -0.09
TNFRSF9-201ENST00000377507 KCNA6P17658 529 aa14.51□□□□□ -0.09
TNFRSF9-201ENST00000377507 PTMSP20962 102 aa14.51□□□□□ -0.09
TNFRSF9-201ENST00000377507 IL17REQ8NFR9 667 aa14.51□□□□□ -0.09
TNFRSF9-201ENST00000377507 FER1L4A9Z1Z3 1794 aa14.51□□□□□ -0.09
TNFRSF9-201ENST00000377507 SALL3Q9BXA9 1300 aa14.51□□□□□ -0.09
TNFRSF9-201ENST00000377507 CASC1Q6TDU7 716 aa14.51□□□□□ -0.09
TNFRSF9-201ENST00000377507 MAP3K5Q99683 1374 aa14.5□□□□□ -0.09
TNFRSF9-201ENST00000377507 FAM208AQ9UK61 1670 aaKnown RBP14.5□□□□□ -0.09
TNFRSF9-201ENST00000377507 FLIIQ13045 1269 aa14.5□□□□□ -0.09
TNFRSF9-201ENST00000377507 SLC4A10Q6U841 1118 aa14.5□□□□□ -0.09
TNFRSF9-201ENST00000377507 GNAI3P08754 354 aa14.49□□□□□ -0.09
TNFRSF9-201ENST00000377507 PDE1AP54750 535 aa14.49□□□□□ -0.09
TNFRSF9-201ENST00000377507 TAF7Q15545 349 aaPredicted RBP14.49□□□□□ -0.09
TNFRSF9-201ENST00000377507 SKOR2Q2VWA4 1001 aaPredicted RBP14.49□□□□□ -0.09
TNFRSF9-201ENST00000377507 CACNA1FO60840 1977 aa14.49□□□□□ -0.09
TNFRSF9-201ENST00000377507 REC8O95072 547 aa14.49□□□□□ -0.09
TNFRSF9-201ENST00000377507 HSP90AA1P07900 732 aaKnown RBP14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 221 ms