RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 OVOS2A0A0G2JMS6 1433 aa16.62■□□□□ 0.25
VRK3-202ENST00000377011 EZH2Q15910 746 aaKnown RBP16.62■□□□□ 0.25
VRK3-202ENST00000377011 EIF4A2Q14240 407 aaKnown RBP16.61■□□□□ 0.25
VRK3-202ENST00000377011 EYA1Q99502 592 aa16.61■□□□□ 0.25
VRK3-202ENST00000377011 CDCA7Q9BWT1 371 aaPredicted RBP16.61■□□□□ 0.25
VRK3-202ENST00000377011 NSD2O96028 1365 aa16.61■□□□□ 0.25
VRK3-202ENST00000377011 KIF24Q5T7B8 1368 aa16.61■□□□□ 0.25
VRK3-202ENST00000377011 ERICH6BQ5W0A0 696 aa16.6■□□□□ 0.25
VRK3-202ENST00000377011 ACSBG1Q96GR2 724 aa16.6■□□□□ 0.25
VRK3-202ENST00000377011 SMG6Q86US8 1419 aaKnown RBP16.6■□□□□ 0.25
VRK3-202ENST00000377011 APBA3O96018 575 aa16.59■□□□□ 0.25
VRK3-202ENST00000377011 DDX54Q8TDD1 881 aaKnown RBP16.59■□□□□ 0.25
VRK3-202ENST00000377011 CAMKK2Q96RR4 588 aa16.59■□□□□ 0.25
VRK3-202ENST00000377011 PRKRIP1Q9H875 184 aaPredicted RBP16.59■□□□□ 0.25
VRK3-202ENST00000377011 NCAPD2Q15021 1401 aa16.58■□□□□ 0.24
VRK3-202ENST00000377011 SF3B2Q13435 895 aaKnown RBP16.58■□□□□ 0.24
VRK3-202ENST00000377011 KAT6BQ8WYB5 2073 aa16.58■□□□□ 0.24
VRK3-202ENST00000377011 HNRNPUQ00839 825 aaKnown RBP eCLIP16.57■□□□□ 0.24
VRK3-202ENST00000377011 BAG6P46379 1132 aa16.56■□□□□ 0.24
VRK3-202ENST00000377011 BCL9O00512 1426 aa16.56■□□□□ 0.24
VRK3-202ENST00000377011 AEBP1Q8IUX7 1158 aa16.55■□□□□ 0.24
VRK3-202ENST00000377011 MTHFSP49914 203 aa16.54■□□□□ 0.24
VRK3-202ENST00000377011 PROM2Q8N271 834 aa16.54■□□□□ 0.24
VRK3-202ENST00000377011 ZCRB1Q8TBF4 217 aaKnown RBP16.54■□□□□ 0.24
VRK3-202ENST00000377011 NHSQ6T4R5 1651 aa16.54■□□□□ 0.24
VRK3-202ENST00000377011 RREB1Q92766 1687 aa16.54■□□□□ 0.24
VRK3-202ENST00000377011 DOT1LQ8TEK3 1739 aa16.54■□□□□ 0.24
VRK3-202ENST00000377011 NUP188Q5SRE5 1749 aa16.53■□□□□ 0.24
VRK3-202ENST00000377011 PSDA5PKW4 1024 aaPredicted RBP16.53■□□□□ 0.24
VRK3-202ENST00000377011 CYP27B1O15528 508 aa16.53■□□□□ 0.24
VRK3-202ENST00000377011 IL13P35225 146 aa16.53■□□□□ 0.24
VRK3-202ENST00000377011 BCL11BQ9C0K0 894 aaPredicted RBP16.53■□□□□ 0.24
VRK3-202ENST00000377011 PKD1L3Q7Z443 1732 aa16.52■□□□□ 0.24
VRK3-202ENST00000377011 RAPGEF4Q8WZA2 1011 aa16.52■□□□□ 0.24
VRK3-202ENST00000377011 BTAF1O14981 1849 aa16.52■□□□□ 0.23
VRK3-202ENST00000377011 TOGARAM1Q9Y4F4 1720 aa16.52■□□□□ 0.23
VRK3-202ENST00000377011 IGSF1Q8N6C5 1336 aa16.52■□□□□ 0.23
VRK3-202ENST00000377011 TATP17735 454 aaPredicted RBP16.51■□□□□ 0.23
VRK3-202ENST00000377011 NPC1L1Q9UHC9 1359 aa16.51■□□□□ 0.23
VRK3-202ENST00000377011 ZBED9Q6R2W3 1325 aa16.51■□□□□ 0.23
VRK3-202ENST00000377011 COL3A1P02461 1466 aaPredicted RBP16.5■□□□□ 0.23
VRK3-202ENST00000377011 PRIM1P49642 420 aaKnown RBP16.49■□□□□ 0.23
VRK3-202ENST00000377011 ANP32EQ9BTT0 268 aa16.48■□□□□ 0.23
VRK3-202ENST00000377011 ANO8Q9HCE9 1232 aaPredicted RBP16.48■□□□□ 0.23
VRK3-202ENST00000377011 KCNQ4P56696 695 aa16.47■□□□□ 0.23
VRK3-202ENST00000377011 R3HDM1Q15032 1099 aaKnown RBP16.47■□□□□ 0.23
VRK3-202ENST00000377011 MRS2Q9HD23 443 aa16.47■□□□□ 0.23
VRK3-202ENST00000377011 PLSCR1O15162 318 aa16.46■□□□□ 0.23
VRK3-202ENST00000377011 SULT6B1Q6IMI4 303 aa16.46■□□□□ 0.23
VRK3-202ENST00000377011 SYTL4Q96C24 671 aaPredicted RBP16.46■□□□□ 0.23
VRK3-202ENST00000377011 RGPD3A6NKT7 1758 aaPredicted RBP16.45■□□□□ 0.22
VRK3-202ENST00000377011 RGPD4Q7Z3J3 1758 aa16.45■□□□□ 0.22
VRK3-202ENST00000377011 HMOX1P09601 288 aa16.45■□□□□ 0.22
VRK3-202ENST00000377011 ITGB4P16144 1822 aa16.45■□□□□ 0.22
VRK3-202ENST00000377011 PPP2R1AP30153 589 aa16.45■□□□□ 0.22
VRK3-202ENST00000377011 TXNRD1Q16881 649 aa16.45■□□□□ 0.22
VRK3-202ENST00000377011 LRRC4BQ9NT99 713 aa16.45■□□□□ 0.22
VRK3-202ENST00000377011 PCDH11XQ9BZA7 1347 aa16.44■□□□□ 0.22
VRK3-202ENST00000377011 PCDH11YQ9BZA8 1340 aa16.44■□□□□ 0.22
VRK3-202ENST00000377011 PDGFDQ9GZP0 370 aaPredicted RBP16.44■□□□□ 0.22
VRK3-202ENST00000377011 KDRP35968 1356 aa16.43■□□□□ 0.22
VRK3-202ENST00000377011 PHKG2P15735 406 aa16.42■□□□□ 0.22
VRK3-202ENST00000377011 PARD3Q8TEW0 1356 aa16.42■□□□□ 0.22
VRK3-202ENST00000377011 DIAPH1O60610 1272 aaKnown RBP16.41■□□□□ 0.22
VRK3-202ENST00000377011 CCDC184Q52MB2 194 aa16.41■□□□□ 0.22
VRK3-202ENST00000377011 NKX1-1Q15270 411 aaPredicted RBP16.4■□□□□ 0.22
VRK3-202ENST00000377011 MPRIPQ6WCQ1 1025 aa16.4■□□□□ 0.22
VRK3-202ENST00000377011 SPG7Q9UQ90 795 aa16.4■□□□□ 0.22
VRK3-202ENST00000377011 PAPPAQ13219 1627 aa16.4■□□□□ 0.22
VRK3-202ENST00000377011 LY75O60449 1722 aa16.39■□□□□ 0.22
VRK3-202ENST00000377011 KDM6AO15550 1401 aaPredicted RBP16.39■□□□□ 0.22
VRK3-202ENST00000377011 PIGBQ92521 554 aa16.39■□□□□ 0.21
VRK3-202ENST00000377011 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.39■□□□□ 0.211e-7■■□□□ 12.1
VRK3-202ENST00000377011 ZNF827Q17R98 1081 aa16.38■□□□□ 0.21
VRK3-202ENST00000377011 PPP4R2Q9NY27 417 aa16.38■□□□□ 0.21
VRK3-202ENST00000377011 U2SURPO15042 1029 aaKnown RBP16.37■□□□□ 0.21
VRK3-202ENST00000377011 ZNF530Q6P9A1 599 aaPredicted RBP16.37■□□□□ 0.21
VRK3-202ENST00000377011 IFNL2Q8IZJ0 200 aa16.37■□□□□ 0.21
VRK3-202ENST00000377011 FAM9BQ8IZU0 186 aa16.36■□□□□ 0.21
VRK3-202ENST00000377011 RBM19Q9Y4C8 960 aaKnown RBP16.36■□□□□ 0.21
VRK3-202ENST00000377011 MTHFSDQ2M296 383 aaKnown RBP16.36■□□□□ 0.21
VRK3-202ENST00000377011 PLEKHO1Q53GL0 409 aaPredicted RBP16.35■□□□□ 0.21
VRK3-202ENST00000377011 TUBGCP6Q96RT7 1819 aa16.34■□□□□ 0.21
VRK3-202ENST00000377011 LGR6Q9HBX8 967 aa16.34■□□□□ 0.21
VRK3-202ENST00000377011 ASAP1Q9ULH1 1129 aa16.34■□□□□ 0.21
VRK3-202ENST00000377011 VIRMAQ69YN4 1812 aaKnown RBP16.34■□□□□ 0.21
VRK3-202ENST00000377011 CASZ1Q86V15 1759 aa16.34■□□□□ 0.21
VRK3-202ENST00000377011 PHACTR3Q96KR7 559 aa16.33■□□□□ 0.21
VRK3-202ENST00000377011 SMIM5Q71RC9 77 aa16.33■□□□□ 0.2
VRK3-202ENST00000377011 SLC15A2Q16348 729 aa16.32■□□□□ 0.2
VRK3-202ENST00000377011 NBPF14Q5TI25 921 aa16.32■□□□□ 0.2
VRK3-202ENST00000377011 AMIGO3Q86WK7 504 aa16.32■□□□□ 0.2
VRK3-202ENST00000377011 RSPH6AQ9H0K4 717 aa16.32■□□□□ 0.2
VRK3-202ENST00000377011 PALLDQ8WX93 1383 aa16.32■□□□□ 0.2
VRK3-202ENST00000377011 SCN11AQ9UI33 1791 aa16.32■□□□□ 0.2
VRK3-202ENST00000377011 RALBP1Q15311 655 aa16.31■□□□□ 0.2
VRK3-202ENST00000377011 AMOTQ4VCS5 1084 aa16.31■□□□□ 0.2
VRK3-202ENST00000377011 AKT1S1Q96B36 256 aa16.31■□□□□ 0.2
VRK3-202ENST00000377011 ATG3Q9NT62 314 aa16.31■□□□□ 0.2
VRK3-202ENST00000377011 TAF1LQ8IZX4 1826 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms