RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 STK11IPQ8N1F8 1099 aa7.83□□□□□ -1.16
SMC1A-202ENST00000375340 GOLGA6L1Q8N7Z2 621 aa7.83□□□□□ -1.16
SMC1A-202ENST00000375340 ABCC11Q96J66 1382 aa7.83□□□□□ -1.16
SMC1A-202ENST00000375340 PER1O15534 1290 aaPredicted RBP7.83□□□□□ -1.16
SMC1A-202ENST00000375340 SRGAP3O43295 1099 aa7.83□□□□□ -1.16
SMC1A-202ENST00000375340 CCDC83Q8IWF9 413 aa7.83□□□□□ -1.16
SMC1A-202ENST00000375340 TRIM29Q14134 588 aa7.82□□□□□ -1.16
SMC1A-202ENST00000375340 ZSCAN30Q86W11 494 aa7.82□□□□□ -1.16
SMC1A-202ENST00000375340 BAG4O95429 457 aaKnown RBP7.82□□□□□ -1.16
SMC1A-202ENST00000375340 MCM2P49736 904 aa7.82□□□□□ -1.16
SMC1A-202ENST00000375340 LRRFIP2Q9Y608 721 aaKnown RBP7.82□□□□□ -1.16
SMC1A-202ENST00000375340 KIF1BO60333 1816 aa7.82□□□□□ -1.16
SMC1A-202ENST00000375340 FYB1O15117 783 aa7.82□□□□□ -1.16
SMC1A-202ENST00000375340 FMNL2Q96PY5 1086 aa7.82□□□□□ -1.16
SMC1A-202ENST00000375340 PRPF40BQ6NWY9 871 aaKnown RBP7.82□□□□□ -1.16
SMC1A-202ENST00000375340 SYNMO15061 1565 aa7.82□□□□□ -1.16
SMC1A-202ENST00000375340 TRPM1Q7Z4N2 1603 aa7.82□□□□□ -1.16
SMC1A-202ENST00000375340 RRP9O43818 475 aaKnown RBP7.82□□□□□ -1.16
SMC1A-202ENST00000375340 ESCO1Q5FWF5 840 aa7.82□□□□□ -1.16
SMC1A-202ENST00000375340 TTLL5Q6EMB2 1281 aa7.82□□□□□ -1.16
SMC1A-202ENST00000375340 CLASRPQ8N2M8 674 aaKnown RBP7.81□□□□□ -1.16
SMC1A-202ENST00000375340 HDAC1Q13547 482 aaPredicted RBP7.81□□□□□ -1.16
SMC1A-202ENST00000375340 NLRP2Q9NX02 1062 aa7.81□□□□□ -1.16
SMC1A-202ENST00000375340 ZRANB1Q9UGI0 708 aa7.81□□□□□ -1.16
SMC1A-202ENST00000375340 NSD2O96028 1365 aa7.81□□□□□ -1.16
SMC1A-202ENST00000375340 CD109Q6YHK3 1445 aa7.81□□□□□ -1.16
SMC1A-202ENST00000375340 A0A0U1RQG5 324 aaPredicted RBP7.81□□□□□ -1.16
SMC1A-202ENST00000375340 BTBD11A6QL63 1104 aa7.81□□□□□ -1.16
SMC1A-202ENST00000375340 CCDC192P0DO97 292 aa7.81□□□□□ -1.16
SMC1A-202ENST00000375340 C14orf93Q9H972 538 aaKnown RBP7.81□□□□□ -1.16
SMC1A-202ENST00000375340 ANKRD36BQ8N2N9 1353 aa7.81□□□□□ -1.16
SMC1A-202ENST00000375340 ABCC1P33527 1531 aa7.81□□□□□ -1.16
SMC1A-202ENST00000375340 TTC37Q6PGP7 1564 aa7.81□□□□□ -1.16
SMC1A-202ENST00000375340 ZNF830Q96NB3 372 aaPredicted RBP7.81□□□□□ -1.16
SMC1A-202ENST00000375340 SRCIN1Q9C0H9 1055 aa7.81□□□□□ -1.16
SMC1A-202ENST00000375340 TPM3P06753 285 aa7.81□□□□□ -1.16
SMC1A-202ENST00000375340 LARP1BQ659C4 914 aaKnown RBP7.81□□□□□ -1.16
SMC1A-202ENST00000375340 MRPL50Q8N5N7 158 aaKnown RBP7.81□□□□□ -1.16
SMC1A-202ENST00000375340 PLCH2O75038 1416 aa7.81□□□□□ -1.16
SMC1A-202ENST00000375340 DDX11Q96FC9 970 aa7.81□□□□□ -1.16
SMC1A-202ENST00000375340 BMP2KLQ5H9B9 411 aa7.8□□□□□ -1.16
SMC1A-202ENST00000375340 FERMT3Q86UX7 667 aa7.8□□□□□ -1.16
SMC1A-202ENST00000375340 SYTL4Q96C24 671 aaPredicted RBP7.8□□□□□ -1.16
SMC1A-202ENST00000375340 SPATA32Q96LK8 384 aa7.8□□□□□ -1.16
SMC1A-202ENST00000375340 RRAGDQ9NQL2 400 aaPredicted RBP7.8□□□□□ -1.16
SMC1A-202ENST00000375340 KDM5DQ9BY66 1539 aa7.8□□□□□ -1.16
SMC1A-202ENST00000375340 MAGI2Q86UL8 1455 aa7.8□□□□□ -1.16
SMC1A-202ENST00000375340 GNAT3A8MTJ3 354 aa7.8□□□□□ -1.16
SMC1A-202ENST00000375340 AKAP17AQ02040 695 aaKnown RBP7.8□□□□□ -1.16
SMC1A-202ENST00000375340 SPG7Q9UQ90 795 aa7.8□□□□□ -1.16
SMC1A-202ENST00000375340 SYNE3Q6ZMZ3 975 aa7.8□□□□□ -1.16
SMC1A-202ENST00000375340 AEBP1Q8IUX7 1158 aa7.8□□□□□ -1.16
SMC1A-202ENST00000375340 POLR3AO14802 1390 aaPredicted RBP7.8□□□□□ -1.16
SMC1A-202ENST00000375340 MSH6P52701 1360 aa7.8□□□□□ -1.16
SMC1A-202ENST00000375340 TSPYL6Q8N831 410 aa7.8□□□□□ -1.16
SMC1A-202ENST00000375340 NAT10Q9H0A0 1025 aaKnown RBP7.8□□□□□ -1.16
SMC1A-202ENST00000375340 ARHGEF5Q12774 1597 aa7.79□□□□□ -1.16
SMC1A-202ENST00000375340 MBD5Q9P267 1494 aa7.79□□□□□ -1.16
SMC1A-202ENST00000375340 EVA1CP58658 441 aa7.79□□□□□ -1.16
SMC1A-202ENST00000375340 PCMTD1Q96MG8 357 aaPredicted RBP7.79□□□□□ -1.16
SMC1A-202ENST00000375340 SDSP20132 328 aa7.79□□□□□ -1.16
SMC1A-202ENST00000375340 TTC39AQ5SRH9 613 aa7.79□□□□□ -1.16
SMC1A-202ENST00000375340 USP25Q9UHP3 1055 aa7.79□□□□□ -1.16
SMC1A-202ENST00000375340 A0A1W2PP64 1363 aa7.79□□□□□ -1.16
SMC1A-202ENST00000375340 SHROOM2Q13796 1616 aa7.79□□□□□ -1.16
SMC1A-202ENST00000375340 CBX1P83916 185 aa7.79□□□□□ -1.16
SMC1A-202ENST00000375340 ZNF530Q6P9A1 599 aaPredicted RBP7.79□□□□□ -1.16
SMC1A-202ENST00000375340 C8orf58Q8NAV2 365 aa7.79□□□□□ -1.16
SMC1A-202ENST00000375340 PPIP5K1Q6PFW1 1433 aa7.79□□□□□ -1.16
SMC1A-202ENST00000375340 ERC1Q8IUD2 1116 aa7.79□□□□□ -1.16
SMC1A-202ENST00000375340 MNS1Q8NEH6 495 aa7.79□□□□□ -1.16
SMC1A-202ENST00000375340 SLC26A8Q96RN1 970 aa7.79□□□□□ -1.16
SMC1A-202ENST00000375340 KINO60870 393 aaKnown RBP7.79□□□□□ -1.16
SMC1A-202ENST00000375340 RPAP2Q8IXW5 612 aaPredicted RBP7.79□□□□□ -1.16
SMC1A-202ENST00000375340 SDF4Q9BRK5 362 aa7.79□□□□□ -1.16
SMC1A-202ENST00000375340 PREX2Q70Z35 1606 aa7.79□□□□□ -1.16
SMC1A-202ENST00000375340 CCDC183Q5T5S1 534 aa7.79□□□□□ -1.16
SMC1A-202ENST00000375340 NUP62CLQ9H1M0 184 aa7.78□□□□□ -1.16
SMC1A-202ENST00000375340 CNPY2Q9Y2B0 182 aa7.78□□□□□ -1.16
SMC1A-202ENST00000375340 VPS53Q5VIR6 699 aa7.78□□□□□ -1.16
SMC1A-202ENST00000375340 PRDM15P57071 1507 aaPredicted RBP7.78□□□□□ -1.16
SMC1A-202ENST00000375340 PPFIA3O75145 1194 aa7.78□□□□□ -1.16
SMC1A-202ENST00000375340 ATP7AQ04656 1500 aa7.78□□□□□ -1.16
SMC1A-202ENST00000375340 OLFM4Q6UX06 510 aa7.78□□□□□ -1.16
SMC1A-202ENST00000375340 SLC52A1Q9NWF4 448 aa7.78□□□□□ -1.16
SMC1A-202ENST00000375340 UGGT1Q9NYU2 1555 aa7.78□□□□□ -1.16
SMC1A-202ENST00000375340 ME1P48163 572 aa7.78□□□□□ -1.16
SMC1A-202ENST00000375340 TRDNQ13061 729 aa7.78□□□□□ -1.16
SMC1A-202ENST00000375340 MTMR7Q9Y216 660 aa7.78□□□□□ -1.16
SMC1A-202ENST00000375340 HIP1O00291 1037 aa7.78□□□□□ -1.16
SMC1A-202ENST00000375340 PLEKHO1Q53GL0 409 aaPredicted RBP7.78□□□□□ -1.16
SMC1A-202ENST00000375340 CKAP2LQ8IYA6 745 aa7.78□□□□□ -1.16
SMC1A-202ENST00000375340 FAM177BA6PVY3 158 aa7.78□□□□□ -1.16
SMC1A-202ENST00000375340 GJB2P29033 226 aa7.78□□□□□ -1.16
SMC1A-202ENST00000375340 KRT24Q2M2I5 525 aa7.78□□□□□ -1.16
SMC1A-202ENST00000375340 RALYLQ86SE5 291 aaKnown RBP7.78□□□□□ -1.16
SMC1A-202ENST00000375340 RAPGEF4Q8WZA2 1011 aa7.78□□□□□ -1.16
SMC1A-202ENST00000375340 MAP7D2Q96T17 732 aa7.78□□□□□ -1.16
SMC1A-202ENST00000375340 ZGPATQ8N5A5 531 aaKnown RBP7.77□□□□□ -1.16
SMC1A-202ENST00000375340 IDI1Q13907 227 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms