RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 NGLY1Q96IV0 654 aa11.66□□□□□ -0.54
COL4A6-202ENST00000372216 ATF7IPQ6VMQ6 1270 aa11.66□□□□□ -0.54
COL4A6-202ENST00000372216 PDCL3Q9H2J4 239 aa11.66□□□□□ -0.54
COL4A6-202ENST00000372216 TMPOP42166 694 aaKnown RBP11.66□□□□□ -0.54
COL4A6-202ENST00000372216 WDR78Q5VTH9 848 aa11.66□□□□□ -0.54
COL4A6-202ENST00000372216 KRT28Q7Z3Y7 464 aa11.66□□□□□ -0.54
COL4A6-202ENST00000372216 SRGAP3O43295 1099 aa11.66□□□□□ -0.54
COL4A6-202ENST00000372216 TTC16Q8NEE8 873 aa11.66□□□□□ -0.54
COL4A6-202ENST00000372216 ZNF652Q9Y2D9 606 aa11.66□□□□□ -0.54
COL4A6-202ENST00000372216 MPRIPQ6WCQ1 1025 aa11.65□□□□□ -0.54
COL4A6-202ENST00000372216 NUP133Q8WUM0 1156 aa11.65□□□□□ -0.54
COL4A6-202ENST00000372216 PLCD4Q9BRC7 762 aa11.65□□□□□ -0.54
COL4A6-202ENST00000372216 RAI14Q9P0K7 980 aa11.65□□□□□ -0.54
COL4A6-202ENST00000372216 OLFM4Q6UX06 510 aa11.65□□□□□ -0.54
COL4A6-202ENST00000372216 NEBLO76041 1014 aa11.65□□□□□ -0.55
COL4A6-202ENST00000372216 HMGB2P26583 209 aaKnown RBP11.65□□□□□ -0.55
COL4A6-202ENST00000372216 CCDC69A6NI79 296 aa11.64□□□□□ -0.55
COL4A6-202ENST00000372216 MVPQ14764 893 aaKnown RBP11.64□□□□□ -0.55
COL4A6-202ENST00000372216 FMNL2Q96PY5 1086 aa11.64□□□□□ -0.55
COL4A6-202ENST00000372216 RAPGEF6Q8TEU7 1601 aa11.64□□□□□ -0.55
COL4A6-202ENST00000372216 TNRQ92752 1358 aa11.64□□□□□ -0.55
COL4A6-202ENST00000372216 NEFHP12036 1026 aa11.64□□□□□ -0.55
COL4A6-202ENST00000372216 DCTN1Q14203 1278 aa11.64□□□□□ -0.55
COL4A6-202ENST00000372216 AMOTQ4VCS5 1084 aa11.64□□□□□ -0.55
COL4A6-202ENST00000372216 USP5P45974 858 aa11.64□□□□□ -0.55
COL4A6-202ENST00000372216 GPS2Q13227 327 aa11.64□□□□□ -0.55
COL4A6-202ENST00000372216 DUSP27Q5VZP5 1158 aa11.64□□□□□ -0.55
COL4A6-202ENST00000372216 SCLT1Q96NL6 688 aa11.64□□□□□ -0.55
COL4A6-202ENST00000372216 THUMPD2Q9BTF0 503 aaKnown RBP11.64□□□□□ -0.55
COL4A6-202ENST00000372216 NEK4P51957 841 aa11.64□□□□□ -0.55
COL4A6-202ENST00000372216 THOC2Q8NI27 1593 aaKnown RBP11.64□□□□□ -0.55
COL4A6-202ENST00000372216 CEP126Q9P2H0 1117 aa11.64□□□□□ -0.55
COL4A6-202ENST00000372216 TMEM87AQ8NBN3 555 aa11.63□□□□□ -0.55
COL4A6-202ENST00000372216 MYD88Q99836 296 aa11.63□□□□□ -0.55
COL4A6-202ENST00000372216 TANGO6Q9C0B7 1094 aa11.63□□□□□ -0.55
COL4A6-202ENST00000372216 IFT57Q9NWB7 429 aa11.63□□□□□ -0.55
COL4A6-202ENST00000372216 TEX14Q8IWB6 1497 aa11.63□□□□□ -0.55
COL4A6-202ENST00000372216 EMILIN1Q9Y6C2 1016 aa11.63□□□□□ -0.55
COL4A6-202ENST00000372216 NCOA1Q15788 1441 aa11.63□□□□□ -0.55
COL4A6-202ENST00000372216 PSMD1Q99460 953 aa11.63□□□□□ -0.55
COL4A6-202ENST00000372216 TRMT1LQ7Z2T5 733 aaKnown RBP11.63□□□□□ -0.55
COL4A6-202ENST00000372216 DHX29Q7Z478 1369 aaKnown RBP11.62□□□□□ -0.55
COL4A6-202ENST00000372216 ASXL2Q76L83 1435 aa11.62□□□□□ -0.55
COL4A6-202ENST00000372216 SSBP05455 408 aaKnown RBP eCLIP11.62□□□□□ -0.55
COL4A6-202ENST00000372216 LRP2BPQ9P2M1 347 aa11.62□□□□□ -0.55
COL4A6-202ENST00000372216 TDO2P48775 406 aa11.62□□□□□ -0.55
COL4A6-202ENST00000372216 TAF7Q15545 349 aaPredicted RBP11.62□□□□□ -0.55
COL4A6-202ENST00000372216 SMC2O95347 1197 aa11.62□□□□□ -0.55
COL4A6-202ENST00000372216 METTL24Q5JXM2 366 aa11.62□□□□□ -0.55
COL4A6-202ENST00000372216 CYP46A1Q9Y6A2 500 aa11.62□□□□□ -0.55
COL4A6-202ENST00000372216 PEG3Q9GZU2 1588 aa11.61□□□□□ -0.55
COL4A6-202ENST00000372216 EXOC5O00471 708 aa11.61□□□□□ -0.55
COL4A6-202ENST00000372216 GSE1Q14687 1217 aa11.61□□□□□ -0.55
COL4A6-202ENST00000372216 KDM5BQ9UGL1 1544 aa11.61□□□□□ -0.55
COL4A6-202ENST00000372216 SLC4A8Q2Y0W8 1093 aa11.61□□□□□ -0.55
COL4A6-202ENST00000372216 IL1RAPL2Q9NP60 686 aa11.61□□□□□ -0.55
COL4A6-202ENST00000372216 ZNF76P36508 570 aa11.61□□□□□ -0.55
COL4A6-202ENST00000372216 MAGEC2Q9UBF1 373 aaPredicted RBP11.61□□□□□ -0.55
COL4A6-202ENST00000372216 LIG1P18858 919 aa11.6□□□□□ -0.55
COL4A6-202ENST00000372216 SSR1P43307 286 aaKnown RBP11.6□□□□□ -0.55
COL4A6-202ENST00000372216 CHD1LQ86WJ1 897 aa11.6□□□□□ -0.55
COL4A6-202ENST00000372216 MAP7D2Q96T17 732 aa11.6□□□□□ -0.55
COL4A6-202ENST00000372216 SDF4Q9BRK5 362 aa11.6□□□□□ -0.55
COL4A6-202ENST00000372216 NAT10Q9H0A0 1025 aaKnown RBP11.6□□□□□ -0.55
COL4A6-202ENST00000372216 TXLNAP40222 546 aa11.6□□□□□ -0.55
COL4A6-202ENST00000372216 ZNF396Q96N95 335 aaPredicted RBP11.6□□□□□ -0.55
COL4A6-202ENST00000372216 RABEP1Q15276 862 aa11.6□□□□□ -0.55
COL4A6-202ENST00000372216 NUTM1Q86Y26 1132 aa11.6□□□□□ -0.55
COL4A6-202ENST00000372216 ANKIB1Q9P2G1 1089 aa11.59□□□□□ -0.55
COL4A6-202ENST00000372216 MSH6P52701 1360 aa11.59□□□□□ -0.55
COL4A6-202ENST00000372216 IDH1O75874 414 aaKnown RBP11.59□□□□□ -0.55
COL4A6-202ENST00000372216 LARP1Q6PKG0 1096 aaKnown RBP11.59□□□□□ -0.55
COL4A6-202ENST00000372216 TRIM22Q8IYM9 498 aa11.59□□□□□ -0.55
COL4A6-202ENST00000372216 SCAF11Q99590 1463 aaKnown RBP11.59□□□□□ -0.55
COL4A6-202ENST00000372216 MAP3K1Q13233 1512 aa11.59□□□□□ -0.55
COL4A6-202ENST00000372216 MCM2P49736 904 aa11.59□□□□□ -0.55
COL4A6-202ENST00000372216 SOGA3Q5TF21 947 aa11.59□□□□□ -0.55
COL4A6-202ENST00000372216 CWC27Q6UX04 472 aaKnown RBP11.59□□□□□ -0.55
COL4A6-202ENST00000372216 ANKRD1Q15327 319 aa11.59□□□□□ -0.55
COL4A6-202ENST00000372216 TMEM57Q8N5G2 664 aa11.58□□□□□ -0.55
COL4A6-202ENST00000372216 CCDC173Q0VFZ6 552 aa11.58□□□□□ -0.56
COL4A6-202ENST00000372216 MNS1Q8NEH6 495 aa11.58□□□□□ -0.56
COL4A6-202ENST00000372216 TMOD2Q9NZR1 351 aa11.58□□□□□ -0.56
COL4A6-202ENST00000372216 SLFN5Q08AF3 891 aa11.58□□□□□ -0.56
COL4A6-202ENST00000372216 CCDC184Q52MB2 194 aa11.58□□□□□ -0.56
COL4A6-202ENST00000372216 CAVIN4Q5BKX8 364 aa11.58□□□□□ -0.56
COL4A6-202ENST00000372216 C14orf93Q9H972 538 aaKnown RBP11.58□□□□□ -0.56
COL4A6-202ENST00000372216 ABCF2Q9UG63 623 aa11.58□□□□□ -0.56
COL4A6-202ENST00000372216 STK38Q15208 465 aa11.58□□□□□ -0.56
COL4A6-202ENST00000372216 RPGRQ92834 1020 aaKnown RBP11.58□□□□□ -0.56
COL4A6-202ENST00000372216 AIDAQ96BJ3 306 aa11.57□□□□□ -0.56
COL4A6-202ENST00000372216 AKAP2Q9Y2D5 859 aa11.57□□□□□ -0.56
COL4A6-202ENST00000372216 ITSN2Q9NZM3 1697 aa11.57□□□□□ -0.56
COL4A6-202ENST00000372216 PDCP20941 246 aa11.57□□□□□ -0.56
COL4A6-202ENST00000372216 UBAC1Q9BSL1 405 aa11.57□□□□□ -0.56
COL4A6-202ENST00000372216 PODXL2Q9NZ53 605 aa11.57□□□□□ -0.56
COL4A6-202ENST00000372216 ACEP12821 1306 aa11.57□□□□□ -0.56
COL4A6-202ENST00000372216 RNF214Q8ND24 703 aa11.57□□□□□ -0.56
COL4A6-202ENST00000372216 TRMT112Q9UI30 125 aaKnown RBP11.57□□□□□ -0.56
COL4A6-202ENST00000372216 CADPS2Q86UW7 1296 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms