RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 PLEKHM2Q8IWE5 1019 aa17.76■□□□□ 0.43
CD48-201ENST00000368045 RTN4Q9NQC3 1192 aaKnown RBP17.76■□□□□ 0.43
CD48-201ENST00000368045 GOLGA6L3A6NEY3 463 aa17.75■□□□□ 0.43
CD48-201ENST00000368045 TRAK2O60296 914 aa17.75■□□□□ 0.43
CD48-201ENST00000368045 ISY1Q9ULR0 285 aaKnown RBP17.75■□□□□ 0.43
CD48-201ENST00000368045 PEAK1Q9H792 1746 aa17.74■□□□□ 0.43
CD48-201ENST00000368045 K7ELQ4 463 aaPredicted RBP17.74■□□□□ 0.43
CD48-201ENST00000368045 TTC22Q5TAA0 569 aa17.74■□□□□ 0.43
CD48-201ENST00000368045 GBP4Q96PP9 640 aa17.74■□□□□ 0.43
CD48-201ENST00000368045 SBNO1A3KN83 1393 aa17.73■□□□□ 0.43
CD48-201ENST00000368045 GSPT1P15170 499 aaKnown RBP17.73■□□□□ 0.43
CD48-201ENST00000368045 CEP85Q6P2H3 762 aa17.73■□□□□ 0.43
CD48-201ENST00000368045 RTL1A6NKG5 1358 aa17.72■□□□□ 0.43
CD48-201ENST00000368045 FLT4P35916 1363 aa17.72■□□□□ 0.43
CD48-201ENST00000368045 RAB3GAP1Q15042 981 aa17.72■□□□□ 0.43
CD48-201ENST00000368045 HSP90AB2PQ58FF8 381 aa17.72■□□□□ 0.43
CD48-201ENST00000368045 MCM10Q7L590 875 aa17.72■□□□□ 0.43
CD48-201ENST00000368045 EID1Q9Y6B2 187 aa17.72■□□□□ 0.43
CD48-201ENST00000368045 KIF13AQ9H1H9 1805 aa17.72■□□□□ 0.43
CD48-201ENST00000368045 KDRP35968 1356 aa17.72■□□□□ 0.43
CD48-201ENST00000368045 LTKP29376 864 aa17.71■□□□□ 0.43
CD48-201ENST00000368045 PTPRUQ92729 1446 aa17.71■□□□□ 0.43
CD48-201ENST00000368045 RABEP1Q15276 862 aa17.71■□□□□ 0.43
CD48-201ENST00000368045 SKOR2Q2VWA4 1001 aaPredicted RBP17.71■□□□□ 0.43
CD48-201ENST00000368045 SLIT1O75093 1534 aa17.7■□□□□ 0.42
CD48-201ENST00000368045 MSH6P52701 1360 aa17.7■□□□□ 0.42
CD48-201ENST00000368045 ARHGAP23Q9P227 1491 aa17.7■□□□□ 0.42
CD48-201ENST00000368045 HTATSF1O43719 755 aaKnown RBP17.7■□□□□ 0.42
CD48-201ENST00000368045 HMMRO75330 724 aa17.7■□□□□ 0.42
CD48-201ENST00000368045 RTF1Q92541 710 aaKnown RBP17.7■□□□□ 0.42
CD48-201ENST00000368045 TBX22Q9Y458 520 aa17.7■□□□□ 0.42
CD48-201ENST00000368045 MAP3K19Q56UN5 1328 aa17.69■□□□□ 0.42
CD48-201ENST00000368045 CCT4P50991 539 aaKnown RBP17.69■□□□□ 0.42
CD48-201ENST00000368045 CASC1Q6TDU7 716 aa17.69■□□□□ 0.42
CD48-201ENST00000368045 GAS2L2Q8NHY3 880 aa17.69■□□□□ 0.42
CD48-201ENST00000368045 TNPO1Q92973 898 aaKnown RBP17.69■□□□□ 0.42
CD48-201ENST00000368045 HSP90AA1P07900 732 aaKnown RBP17.68■□□□□ 0.42
CD48-201ENST00000368045 KRT24Q2M2I5 525 aa17.68■□□□□ 0.42
CD48-201ENST00000368045 DIP2AQ14689 1571 aa17.68■□□□□ 0.42
CD48-201ENST00000368045 SOS1Q07889 1333 aaPredicted RBP17.68■□□□□ 0.42
CD48-201ENST00000368045 CLEC17AQ6ZS10 378 aa17.68■□□□□ 0.42
CD48-201ENST00000368045 IGSF1Q8N6C5 1336 aa17.67■□□□□ 0.42
CD48-201ENST00000368045 SLC4A2P04920 1241 aa17.67■□□□□ 0.42
CD48-201ENST00000368045 MRE11P49959 708 aa17.67■□□□□ 0.42
CD48-201ENST00000368045 TSPYL4Q9UJ04 414 aa17.66■□□□□ 0.42
CD48-201ENST00000368045 ANKARQ7Z5J8 1434 aa17.66■□□□□ 0.42
CD48-201ENST00000368045 XRCC6P12956 609 aaKnown RBP eCLIP17.66■□□□□ 0.42
CD48-201ENST00000368045 MTHFSDQ2M296 383 aaKnown RBP17.66■□□□□ 0.42
CD48-201ENST00000368045 MEIS3Q99687 375 aa17.66■□□□□ 0.42
CD48-201ENST00000368045 USP26Q9BXU7 913 aa17.66■□□□□ 0.42
CD48-201ENST00000368045 AMOTL2Q9Y2J4 779 aa17.66■□□□□ 0.42
CD48-201ENST00000368045 FMN2Q9NZ56 1722 aa17.65■□□□□ 0.42
CD48-201ENST00000368045 CD2BP2O95400 341 aaKnown RBP17.65■□□□□ 0.42
CD48-201ENST00000368045 OSBPL3Q9H4L5 887 aa17.65■□□□□ 0.42
CD48-201ENST00000368045 BABAM1Q9NWV8 329 aa17.64■□□□□ 0.41
CD48-201ENST00000368045 RIMS1Q86UR5 1692 aaKnown RBP17.64■□□□□ 0.41
CD48-201ENST00000368045 NGDNQ8NEJ9 315 aaKnown RBP17.63■□□□□ 0.41
CD48-201ENST00000368045 SLC26A8Q96RN1 970 aa17.63■□□□□ 0.41
CD48-201ENST00000368045 GZF1Q9H116 711 aaPredicted RBP17.63■□□□□ 0.41
CD48-201ENST00000368045 NUTM2FA1L443 756 aa17.63■□□□□ 0.41
CD48-201ENST00000368045 REC8O95072 547 aa17.63■□□□□ 0.41
CD48-201ENST00000368045 SDSP20132 328 aa17.63■□□□□ 0.41
CD48-201ENST00000368045 AMPHP49418 695 aa17.63■□□□□ 0.41
CD48-201ENST00000368045 C16orf71Q8IYS4 520 aaPredicted RBP17.63■□□□□ 0.41
CD48-201ENST00000368045 STK31Q9BXU1 1019 aa17.63■□□□□ 0.41
CD48-201ENST00000368045 LRRC37A3O60309 1634 aa17.62■□□□□ 0.41
CD48-201ENST00000368045 GOLGA6L22H0YM25 854 aa17.62■□□□□ 0.41
CD48-201ENST00000368045 EYA1Q99502 592 aa17.62■□□□□ 0.41
CD48-201ENST00000368045 RBM42Q9BTD8 480 aaKnown RBP17.62■□□□□ 0.41
CD48-201ENST00000368045 GNAI2P04899 355 aa17.61■□□□□ 0.41
CD48-201ENST00000368045 GNAI3P08754 354 aa17.61■□□□□ 0.41
CD48-201ENST00000368045 CCDC30Q5VVM6 783 aa17.61■□□□□ 0.41
CD48-201ENST00000368045 CEP170BQ9Y4F5 1589 aaPredicted RBP17.6■□□□□ 0.41
CD48-201ENST00000368045 FOXO3O43524 673 aa17.6■□□□□ 0.41
CD48-201ENST00000368045 NUCB2P80303 420 aa17.6■□□□□ 0.41
CD48-201ENST00000368045 OTUD7AQ8TE49 926 aaPredicted RBP17.6■□□□□ 0.41
CD48-201ENST00000368045 CWC22Q9HCG8 908 aaKnown RBP17.6■□□□□ 0.41
CD48-201ENST00000368045 PIK3C2AO00443 1686 aa17.6■□□□□ 0.41
CD48-201ENST00000368045 USP54Q70EL1 1684 aa17.59■□□□□ 0.41
CD48-201ENST00000368045 ERC2O15083 957 aa17.58■□□□□ 0.41
CD48-201ENST00000368045 SOX12O15370 315 aa17.58■□□□□ 0.41
CD48-201ENST00000368045 SMARCA5O60264 1052 aaPredicted RBP17.58■□□□□ 0.41
CD48-201ENST00000368045 ST18O60284 1047 aa17.58■□□□□ 0.41
CD48-201ENST00000368045 G2E3Q7L622 706 aa17.58■□□□□ 0.41
CD48-201ENST00000368045 THEMISQ8N1K5 641 aaPredicted RBP17.58■□□□□ 0.41
CD48-201ENST00000368045 GRPEL1Q9HAV7 217 aa17.58■□□□□ 0.41
CD48-201ENST00000368045 XRN1Q8IZH2 1706 aaKnown RBP17.58■□□□□ 0.4
CD48-201ENST00000368045 GNAT3A8MTJ3 354 aa17.58■□□□□ 0.4
CD48-201ENST00000368045 MIS18AQ9NYP9 233 aa17.58■□□□□ 0.4
CD48-201ENST00000368045 PXDNLA1KZ92 1463 aa17.57■□□□□ 0.4
CD48-201ENST00000368045 PDE1AP54750 535 aa17.57■□□□□ 0.4
CD48-201ENST00000368045 SLC4A10Q6U841 1118 aa17.57■□□□□ 0.4
CD48-201ENST00000368045 MAP3K5Q99683 1374 aa17.56■□□□□ 0.4
CD48-201ENST00000368045 FLIIQ13045 1269 aa17.56■□□□□ 0.4
CD48-201ENST00000368045 IBTKQ9P2D0 1353 aaPredicted RBP17.56■□□□□ 0.4
CD48-201ENST00000368045 SSFA2P28290 1259 aa17.56■□□□□ 0.4
CD48-201ENST00000368045 HOXC9P31274 260 aa17.56■□□□□ 0.4
CD48-201ENST00000368045 NLRP6P59044 892 aa17.56■□□□□ 0.4
CD48-201ENST00000368045 FOXD4L1Q9NU39 408 aa17.56■□□□□ 0.4
CD48-201ENST00000368045 SALL3Q9BXA9 1300 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms