RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.91□□□□□ -0.18
SYNE1-204ENST00000367248 IGHMBP2P38935 993 aaKnown RBP13.91□□□□□ -0.18
SYNE1-204ENST00000367248 ARID3AQ99856 593 aa13.91□□□□□ -0.18
SYNE1-204ENST00000367248 ECM2O94769 699 aaPredicted RBP13.9□□□□□ -0.18
SYNE1-204ENST00000367248 PIBF1Q8WXW3 757 aa13.9□□□□□ -0.18
SYNE1-204ENST00000367248 ADAMTS12P58397 1594 aa13.9□□□□□ -0.18
SYNE1-204ENST00000367248 SYCP2Q9BX26 1530 aa13.9□□□□□ -0.18
SYNE1-204ENST00000367248 DUOX2Q9NRD8 1548 aa13.9□□□□□ -0.18
SYNE1-204ENST00000367248 ABCC2Q92887 1545 aa13.9□□□□□ -0.18
SYNE1-204ENST00000367248 SSH1Q8WYL5 1049 aa13.9□□□□□ -0.18
SYNE1-204ENST00000367248 RIMS2Q9UQ26 1411 aa13.89□□□□□ -0.19
SYNE1-204ENST00000367248 MPHOSPH10O00566 681 aaKnown RBP13.89□□□□□ -0.19
SYNE1-204ENST00000367248 LARP1Q6PKG0 1096 aaKnown RBP13.89□□□□□ -0.19
SYNE1-204ENST00000367248 CCDC47Q96A33 483 aaKnown RBP13.89□□□□□ -0.19
SYNE1-204ENST00000367248 A0A0U1RQG5 324 aaPredicted RBP13.89□□□□□ -0.19
SYNE1-204ENST00000367248 NEK4P51957 841 aa13.89□□□□□ -0.19
SYNE1-204ENST00000367248 ANKRD36BQ8N2N9 1353 aa13.89□□□□□ -0.19
SYNE1-204ENST00000367248 GOLGA6L19H0YKK7 550 aa13.89□□□□□ -0.19
SYNE1-204ENST00000367248 TMEM57Q8N5G2 664 aa13.89□□□□□ -0.19
SYNE1-204ENST00000367248 FANCIQ9NVI1 1328 aa13.89□□□□□ -0.19
SYNE1-204ENST00000367248 LMTK3Q96Q04 1460 aa13.89□□□□□ -0.19
SYNE1-204ENST00000367248 AACSQ86V21 672 aa13.89□□□□□ -0.19
SYNE1-204ENST00000367248 RPGRQ92834 1020 aaKnown RBP13.89□□□□□ -0.19
SYNE1-204ENST00000367248 ZNF652Q9Y2D9 606 aa13.89□□□□□ -0.19
SYNE1-204ENST00000367248 SLC3A2P08195 630 aaKnown RBP13.89□□□□□ -0.19
SYNE1-204ENST00000367248 ALDH1L2Q3SY69 923 aa13.88□□□□□ -0.19
SYNE1-204ENST00000367248 IFNL2Q8IZJ0 200 aa13.88□□□□□ -0.19
SYNE1-204ENST00000367248 IL1RAPL2Q9NP60 686 aa13.88□□□□□ -0.19
SYNE1-204ENST00000367248 LRP2BPQ9P2M1 347 aa13.88□□□□□ -0.19
SYNE1-204ENST00000367248 TTC21AQ8NDW8 1320 aa13.88□□□□□ -0.19
SYNE1-204ENST00000367248 FBLN1P23142 703 aa13.88□□□□□ -0.19
SYNE1-204ENST00000367248 NPHP3Q7Z494 1330 aa13.88□□□□□ -0.19
SYNE1-204ENST00000367248 C6orf229H3BNL8 230 aa13.87□□□□□ -0.19
SYNE1-204ENST00000367248 TMOD2Q9NZR1 351 aa13.87□□□□□ -0.19
SYNE1-204ENST00000367248 NACAP1Q9BZK3 213 aa13.87□□□□□ -0.19
SYNE1-204ENST00000367248 RARSP54136 660 aaKnown RBP13.87□□□□□ -0.19
SYNE1-204ENST00000367248 RABEP1Q15276 862 aa13.87□□□□□ -0.19
SYNE1-204ENST00000367248 RFC4P35249 363 aa13.87□□□□□ -0.19
SYNE1-204ENST00000367248 ANKRD24Q8TF21 1146 aa13.87□□□□□ -0.19
SYNE1-204ENST00000367248 ZBTB3Q9H5J0 574 aa13.87□□□□□ -0.19
SYNE1-204ENST00000367248 CCDC73Q6ZRK6 1079 aa13.87□□□□□ -0.19
SYNE1-204ENST00000367248 FMNL2Q96PY5 1086 aa13.87□□□□□ -0.19
SYNE1-204ENST00000367248 XBP1P17861 261 aa13.86□□□□□ -0.19
SYNE1-204ENST00000367248 CHD1LQ86WJ1 897 aa13.86□□□□□ -0.19
SYNE1-204ENST00000367248 KIAA0556O60303 1618 aa13.86□□□□□ -0.19
SYNE1-204ENST00000367248 IDH1O75874 414 aaKnown RBP13.86□□□□□ -0.19
SYNE1-204ENST00000367248 TPM3P06753 285 aa13.86□□□□□ -0.19
SYNE1-204ENST00000367248 TPM2P07951 284 aa13.86□□□□□ -0.19
SYNE1-204ENST00000367248 DBF4Q9UBU7 674 aaPredicted RBP13.86□□□□□ -0.19
SYNE1-204ENST00000367248 TRMT112Q9UI30 125 aaKnown RBP13.86□□□□□ -0.19
SYNE1-204ENST00000367248 TSR1Q2NL82 804 aaKnown RBP13.86□□□□□ -0.19
SYNE1-204ENST00000367248 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.86□□□□□ -0.19
SYNE1-204ENST00000367248 NUP133Q8WUM0 1156 aa13.86□□□□□ -0.19
SYNE1-204ENST00000367248 MYD88Q99836 296 aa13.86□□□□□ -0.19
SYNE1-204ENST00000367248 CLEC11AQ9Y240 323 aa13.86□□□□□ -0.19
SYNE1-204ENST00000367248 ZSCAN25Q6NSZ9 544 aa13.85□□□□□ -0.19
SYNE1-204ENST00000367248 MCM2P49736 904 aa13.85□□□□□ -0.19
SYNE1-204ENST00000367248 BRMS1Q9HCU9 246 aa13.85□□□□□ -0.19
SYNE1-204ENST00000367248 METTL24Q5JXM2 366 aa13.85□□□□□ -0.19
SYNE1-204ENST00000367248 DNAAF4Q8WXU2 420 aa13.84□□□□□ -0.19
SYNE1-204ENST00000367248 EXOC6BQ9Y2D4 811 aa13.84□□□□□ -0.19
SYNE1-204ENST00000367248 C19orf44Q9H6X5 657 aa13.84□□□□□ -0.19
SYNE1-204ENST00000367248 HSP90AB2PQ58FF8 381 aa13.84□□□□□ -0.19
SYNE1-204ENST00000367248 HOOK1Q9UJC3 728 aaKnown RBP13.84□□□□□ -0.19
SYNE1-204ENST00000367248 ZMYM3Q14202 1370 aa13.83□□□□□ -0.19
SYNE1-204ENST00000367248 PUS7Q96PZ0 661 aaKnown RBP13.83□□□□□ -0.19
SYNE1-204ENST00000367248 TBX22Q9Y458 520 aa13.83□□□□□ -0.19
SYNE1-204ENST00000367248 TCOF1Q13428 1488 aaKnown RBP13.83□□□□□ -0.19
SYNE1-204ENST00000367248 PAF1Q8N7H5 531 aa13.83□□□□□ -0.2
SYNE1-204ENST00000367248 HSP90AB3PQ58FF7 597 aa13.83□□□□□ -0.2
SYNE1-204ENST00000367248 TPM1P09493 284 aa13.83□□□□□ -0.2
SYNE1-204ENST00000367248 PDCP20941 246 aa13.83□□□□□ -0.2
SYNE1-204ENST00000367248 SLC4A8Q2Y0W8 1093 aa13.83□□□□□ -0.2
SYNE1-204ENST00000367248 KAT6BQ8WYB5 2073 aa13.82□□□□□ -0.2
SYNE1-204ENST00000367248 TDO2P48775 406 aa13.82□□□□□ -0.2
SYNE1-204ENST00000367248 JARID2Q92833 1246 aaPredicted RBP13.82□□□□□ -0.2
SYNE1-204ENST00000367248 USP5P45974 858 aa13.82□□□□□ -0.2
SYNE1-204ENST00000367248 CRACR2BQ8N4Y2 399 aaPredicted RBP13.82□□□□□ -0.2
SYNE1-204ENST00000367248 TEX13AQ9BXU3 409 aaPredicted RBP13.82□□□□□ -0.2
SYNE1-204ENST00000367248 WDR62O43379 1518 aa13.82□□□□□ -0.2
SYNE1-204ENST00000367248 F6X3S4 739 aa13.82□□□□□ -0.2
SYNE1-204ENST00000367248 ANKRD20A12PQ8NF67 263 aa13.82□□□□□ -0.2
SYNE1-204ENST00000367248 CYP46A1Q9Y6A2 500 aa13.82□□□□□ -0.2
SYNE1-204ENST00000367248 HYPKQ9NX55 129 aa13.82□□□□□ -0.2
SYNE1-204ENST00000367248 KCNA6P17658 529 aa13.81□□□□□ -0.2
SYNE1-204ENST00000367248 FLIIQ13045 1269 aa13.81□□□□□ -0.2
SYNE1-204ENST00000367248 KIF1BPQ96EK5 621 aa13.81□□□□□ -0.2
SYNE1-204ENST00000367248 STK3Q13188 491 aa13.81□□□□□ -0.2
SYNE1-204ENST00000367248 WWC2Q6AWC2 1192 aa13.81□□□□□ -0.2
SYNE1-204ENST00000367248 TFCP2L1Q9NZI6 479 aa13.81□□□□□ -0.2
SYNE1-204ENST00000367248 PRAG1Q86YV5 1406 aa13.81□□□□□ -0.2
SYNE1-204ENST00000367248 DISP1Q96F81 1524 aa13.81□□□□□ -0.2
SYNE1-204ENST00000367248 ZHX3Q9H4I2 956 aa13.81□□□□□ -0.2
SYNE1-204ENST00000367248 UNC13AQ9UPW8 1703 aa13.8□□□□□ -0.2
SYNE1-204ENST00000367248 CCAR2Q8N163 923 aaKnown RBP13.8□□□□□ -0.2
SYNE1-204ENST00000367248 SHANK2Q9UPX8 1470 aa13.8□□□□□ -0.2
SYNE1-204ENST00000367248 FAM83GA6ND36 823 aa13.8□□□□□ -0.2
SYNE1-204ENST00000367248 GSE1Q14687 1217 aa13.8□□□□□ -0.2
SYNE1-204ENST00000367248 ZFYVE27Q5T4F4 411 aa13.8□□□□□ -0.2
SYNE1-204ENST00000367248 NUTM1Q86Y26 1132 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms