RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 SLC12A5Q9H2X9 1139 aa12.93□□□□□ -0.34
CLIP1-203ENST00000361654 DEF6Q9H4E7 631 aa12.93□□□□□ -0.34
CLIP1-203ENST00000361654 PKNOX2Q96KN3 472 aa12.92□□□□□ -0.34
CLIP1-203ENST00000361654 NCAPD3P42695 1498 aa12.92□□□□□ -0.34
CLIP1-203ENST00000361654 SMC2O95347 1197 aa12.92□□□□□ -0.34
CLIP1-203ENST00000361654 PPP2R1AP30153 589 aa12.92□□□□□ -0.34
CLIP1-203ENST00000361654 NFKBIBQ15653 356 aa12.92□□□□□ -0.34
CLIP1-203ENST00000361654 TEX13AQ9BXU3 409 aaPredicted RBP12.92□□□□□ -0.34
CLIP1-203ENST00000361654 LARP1Q6PKG0 1096 aaKnown RBP12.92□□□□□ -0.34
CLIP1-203ENST00000361654 ADAMTS8Q9UP79 889 aa12.92□□□□□ -0.34
CLIP1-203ENST00000361654 MBD3O95983 291 aa12.91□□□□□ -0.34
CLIP1-203ENST00000361654 RABEP1Q15276 862 aa12.91□□□□□ -0.34
CLIP1-203ENST00000361654 SEPT7Q16181 437 aaKnown RBP12.91□□□□□ -0.34
CLIP1-203ENST00000361654 C16orf71Q8IYS4 520 aaPredicted RBP12.91□□□□□ -0.34
CLIP1-203ENST00000361654 A0A087WZG4 1122 aa12.91□□□□□ -0.34
CLIP1-203ENST00000361654 SRGAP3O43295 1099 aa12.91□□□□□ -0.34
CLIP1-203ENST00000361654 PHF8Q9UPP1 1060 aa12.91□□□□□ -0.34
CLIP1-203ENST00000361654 CASKIN1Q8WXD9 1431 aa12.91□□□□□ -0.34
CLIP1-203ENST00000361654 MYO1BO43795 1136 aa12.91□□□□□ -0.34
CLIP1-203ENST00000361654 CETN2P41208 172 aa12.91□□□□□ -0.34
CLIP1-203ENST00000361654 TTLL5Q6EMB2 1281 aa12.91□□□□□ -0.34
CLIP1-203ENST00000361654 IMMTQ16891 758 aaKnown RBP12.91□□□□□ -0.34
CLIP1-203ENST00000361654 C6orf229H3BNL8 230 aa12.9□□□□□ -0.34
CLIP1-203ENST00000361654 LDHCP07864 332 aa12.9□□□□□ -0.34
CLIP1-203ENST00000361654 NCOA2Q15596 1464 aa12.9□□□□□ -0.34
CLIP1-203ENST00000361654 PPFIBP1Q86W92 1011 aa12.9□□□□□ -0.34
CLIP1-203ENST00000361654 UBAP1LF5GYI3 381 aa12.9□□□□□ -0.34
CLIP1-203ENST00000361654 MPRIPQ6WCQ1 1025 aa12.9□□□□□ -0.34
CLIP1-203ENST00000361654 CADPS2Q86UW7 1296 aa12.9□□□□□ -0.34
CLIP1-203ENST00000361654 NOM1Q5C9Z4 860 aaKnown RBP12.9□□□□□ -0.34
CLIP1-203ENST00000361654 FMNL2Q96PY5 1086 aa12.9□□□□□ -0.34
CLIP1-203ENST00000361654 C9orf84Q5VXU9 1444 aa12.9□□□□□ -0.35
CLIP1-203ENST00000361654 FCHSD2O94868 740 aa12.89□□□□□ -0.35
CLIP1-203ENST00000361654 ZNF428Q96B54 188 aa12.89□□□□□ -0.35
CLIP1-203ENST00000361654 TRIM5Q9C035 493 aa12.89□□□□□ -0.35
CLIP1-203ENST00000361654 SLC5A1P13866 664 aa12.89□□□□□ -0.35
CLIP1-203ENST00000361654 EZRP15311 586 aaKnown RBP12.89□□□□□ -0.35
CLIP1-203ENST00000361654 CCDC181Q5TID7 509 aa12.89□□□□□ -0.35
CLIP1-203ENST00000361654 BLOC1S2Q6QNY1 142 aa12.89□□□□□ -0.35
CLIP1-203ENST00000361654 ZNF444Q8N0Y2 327 aaPredicted RBP12.89□□□□□ -0.35
CLIP1-203ENST00000361654 FEZ1Q99689 392 aa12.89□□□□□ -0.35
CLIP1-203ENST00000361654 TRMT112Q9UI30 125 aaKnown RBP12.89□□□□□ -0.35
CLIP1-203ENST00000361654 CCDC191Q8NCU4 936 aa12.89□□□□□ -0.35
CLIP1-203ENST00000361654 CCDC85AQ96PX6 553 aaPredicted RBP12.89□□□□□ -0.35
CLIP1-203ENST00000361654 ZNF219Q9P2Y4 722 aaPredicted RBP12.89□□□□□ -0.35
CLIP1-203ENST00000361654 CEP131Q9UPN4 1083 aa12.89□□□□□ -0.35
CLIP1-203ENST00000361654 ERBINQ96RT1 1412 aa12.89□□□□□ -0.35
CLIP1-203ENST00000361654 MAP3K12Q12852 859 aa12.88□□□□□ -0.35
CLIP1-203ENST00000361654 NBPF8Q3BBV2 869 aa12.88□□□□□ -0.35
CLIP1-203ENST00000361654 NBPF14Q5TI25 921 aa12.88□□□□□ -0.35
CLIP1-203ENST00000361654 SEPT11Q9NVA2 429 aaKnown RBP12.88□□□□□ -0.35
CLIP1-203ENST00000361654 IFIT5Q13325 482 aaKnown RBP12.88□□□□□ -0.35
CLIP1-203ENST00000361654 DRC1Q96MC2 740 aa12.88□□□□□ -0.35
CLIP1-203ENST00000361654 CABP5Q9NP86 173 aa12.88□□□□□ -0.35
CLIP1-203ENST00000361654 WDR63Q8IWG1 891 aa12.88□□□□□ -0.35
CLIP1-203ENST00000361654 NOB1Q9ULX3 412 aaKnown RBP12.88□□□□□ -0.35
CLIP1-203ENST00000361654 RRS1Q15050 365 aaKnown RBP12.88□□□□□ -0.35
CLIP1-203ENST00000361654 CCDC96Q2M329 555 aa12.88□□□□□ -0.35
CLIP1-203ENST00000361654 PDIA4P13667 645 aaKnown RBP12.88□□□□□ -0.35
CLIP1-203ENST00000361654 ME1P48163 572 aa12.88□□□□□ -0.35
CLIP1-203ENST00000361654 ANKRD62A6NC57 917 aa12.87□□□□□ -0.35
CLIP1-203ENST00000361654 POLD1P28340 1107 aa12.87□□□□□ -0.35
CLIP1-203ENST00000361654 RFC4P35249 363 aa12.87□□□□□ -0.35
CLIP1-203ENST00000361654 ST5P78524 1137 aa12.87□□□□□ -0.35
CLIP1-203ENST00000361654 CCDC196A0A1B0GTZ2 297 aa12.87□□□□□ -0.35
CLIP1-203ENST00000361654 SERPINC1P01008 464 aa12.87□□□□□ -0.35
CLIP1-203ENST00000361654 DDX46Q7L014 1031 aaKnown RBP12.87□□□□□ -0.35
CLIP1-203ENST00000361654 RAB34Q9BZG1 259 aa12.87□□□□□ -0.35
CLIP1-203ENST00000361654 PDE3AQ14432 1141 aa12.87□□□□□ -0.35
CLIP1-203ENST00000361654 ZNF622Q969S3 477 aaKnown RBP eCLIP12.87□□□□□ -0.351e-6■■□□□ 14.2
CLIP1-203ENST00000361654 CDC5LQ99459 802 aaKnown RBP12.87□□□□□ -0.35
CLIP1-203ENST00000361654 CCDC150Q8NCX0 1101 aa12.87□□□□□ -0.35
CLIP1-203ENST00000361654 ZSCAN31Q96LW9 406 aaPredicted RBP12.87□□□□□ -0.35
CLIP1-203ENST00000361654 CEP57L1Q8IYX8 460 aa12.86□□□□□ -0.35
CLIP1-203ENST00000361654 ANKRD18BA2A2Z9 1011 aa12.86□□□□□ -0.35
CLIP1-203ENST00000361654 CEBPZQ03701 1054 aaKnown RBP12.86□□□□□ -0.35
CLIP1-203ENST00000361654 DAPK1P53355 1430 aa12.86□□□□□ -0.35
CLIP1-203ENST00000361654 CTCFLQ8NI51 663 aaPredicted RBP12.86□□□□□ -0.35
CLIP1-203ENST00000361654 FOXO3O43524 673 aa12.86□□□□□ -0.35
CLIP1-203ENST00000361654 STK3Q13188 491 aa12.86□□□□□ -0.35
CLIP1-203ENST00000361654 CLEC11AQ9Y240 323 aa12.86□□□□□ -0.35
CLIP1-203ENST00000361654 CD109Q6YHK3 1445 aa12.85□□□□□ -0.35
CLIP1-203ENST00000361654 NF2P35240 595 aa12.85□□□□□ -0.35
CLIP1-203ENST00000361654 SPINK5Q9NQ38 1064 aaPredicted RBP12.85□□□□□ -0.35
CLIP1-203ENST00000361654 PPP1R42Q7Z4L9 355 aa12.85□□□□□ -0.35
CLIP1-203ENST00000361654 IQCA1Q86XH1 822 aa12.85□□□□□ -0.35
CLIP1-203ENST00000361654 C1orf115Q9H7X2 142 aa12.85□□□□□ -0.35
CLIP1-203ENST00000361654 HDAC9Q9UKV0 1011 aa12.85□□□□□ -0.35
CLIP1-203ENST00000361654 TROQ12816 1431 aaPredicted RBP12.85□□□□□ -0.35
CLIP1-203ENST00000361654 CBFA2T2O43439 604 aa12.85□□□□□ -0.35
CLIP1-203ENST00000361654 HLA-DOAP06340 250 aa12.85□□□□□ -0.35
CLIP1-203ENST00000361654 RNF41Q9H4P4 317 aaPredicted RBP12.85□□□□□ -0.35
CLIP1-203ENST00000361654 U3KPZ7 1027 aaPredicted RBP12.85□□□□□ -0.35
CLIP1-203ENST00000361654 GOLGA6L10A6NI86 522 aa12.85□□□□□ -0.35
CLIP1-203ENST00000361654 KRT85P78386 507 aa12.85□□□□□ -0.35
CLIP1-203ENST00000361654 NAPBQ9H115 298 aa12.85□□□□□ -0.35
CLIP1-203ENST00000361654 AMOTL2Q9Y2J4 779 aa12.85□□□□□ -0.35
CLIP1-203ENST00000361654 MINDY4BA8MYZ0 360 aa12.84□□□□□ -0.35
CLIP1-203ENST00000361654 SPTY2D1Q68D10 685 aaPredicted RBP12.84□□□□□ -0.35
CLIP1-203ENST00000361654 RPAP2Q8IXW5 612 aaPredicted RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms