RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 AMER1Q5JTC6 1135 aaPredicted RBP11.76□□□□□ -0.53
UPF2-202ENST00000357604 DCAF5Q96JK2 942 aa11.76□□□□□ -0.53
UPF2-202ENST00000357604 SEPT12Q8IYM1 358 aa11.76□□□□□ -0.53
UPF2-202ENST00000357604 MIER1Q8N108 512 aa11.76□□□□□ -0.53
UPF2-202ENST00000357604 BARGINQ6ZT62 677 aa11.76□□□□□ -0.53
UPF2-202ENST00000357604 CARD14Q9BXL6 1004 aa11.76□□□□□ -0.53
UPF2-202ENST00000357604 FAM83GA6ND36 823 aa11.75□□□□□ -0.53
UPF2-202ENST00000357604 CCDC125Q86Z20 511 aa11.75□□□□□ -0.53
UPF2-202ENST00000357604 HSP90AB2PQ58FF8 381 aa11.75□□□□□ -0.53
UPF2-202ENST00000357604 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.75□□□□□ -0.534e-8■■■■□ 23.5
UPF2-202ENST00000357604 ZNF652Q9Y2D9 606 aa11.75□□□□□ -0.53
UPF2-202ENST00000357604 CDK12Q9NYV4 1490 aaPredicted RBP11.75□□□□□ -0.53
UPF2-202ENST00000357604 NEXNQ0ZGT2 675 aa11.74□□□□□ -0.53
UPF2-202ENST00000357604 SSH2Q76I76 1423 aa11.74□□□□□ -0.53
UPF2-202ENST00000357604 LARP1Q6PKG0 1096 aaKnown RBP11.74□□□□□ -0.53
UPF2-202ENST00000357604 PPP1R1BQ9UD71 204 aaPredicted RBP11.74□□□□□ -0.53
UPF2-202ENST00000357604 MPRIPQ6WCQ1 1025 aa11.73□□□□□ -0.53
UPF2-202ENST00000357604 PARD3Q8TEW0 1356 aa11.73□□□□□ -0.53
UPF2-202ENST00000357604 MAP3K5Q99683 1374 aa11.73□□□□□ -0.53
UPF2-202ENST00000357604 FMNL2Q96PY5 1086 aa11.73□□□□□ -0.53
UPF2-202ENST00000357604 APBA3O96018 575 aa11.73□□□□□ -0.53
UPF2-202ENST00000357604 POLD1P28340 1107 aa11.73□□□□□ -0.53
UPF2-202ENST00000357604 CCDC30Q5VVM6 783 aa11.73□□□□□ -0.53
UPF2-202ENST00000357604 PXDNQ92626 1479 aa11.72□□□□□ -0.53
UPF2-202ENST00000357604 FLAD1Q8NFF5 587 aa11.72□□□□□ -0.53
UPF2-202ENST00000357604 ZPR1O75312 459 aa11.72□□□□□ -0.53
UPF2-202ENST00000357604 SPATA31A5Q5VU36 1347 aa11.72□□□□□ -0.53
UPF2-202ENST00000357604 SPATA31A7Q8IWB4 1347 aa11.72□□□□□ -0.53
UPF2-202ENST00000357604 TAF7Q15545 349 aaPredicted RBP11.72□□□□□ -0.53
UPF2-202ENST00000357604 KIF20BQ96Q89 1820 aa11.72□□□□□ -0.53
UPF2-202ENST00000357604 RRP7AQ9Y3A4 280 aaKnown RBP11.72□□□□□ -0.53
UPF2-202ENST00000357604 ERVV-2B6SEH9 535 aa11.71□□□□□ -0.53
UPF2-202ENST00000357604 EYA1Q99502 592 aa11.71□□□□□ -0.53
UPF2-202ENST00000357604 SPATA31A1Q5TZJ5 1347 aa11.71□□□□□ -0.53
UPF2-202ENST00000357604 ERBB3P21860 1342 aa11.71□□□□□ -0.53
UPF2-202ENST00000357604 COL14A1Q05707 1796 aaKnown RBP11.71□□□□□ -0.54
UPF2-202ENST00000357604 WDR63Q8IWG1 891 aa11.7□□□□□ -0.54
UPF2-202ENST00000357604 ACSBG1Q96GR2 724 aa11.7□□□□□ -0.54
UPF2-202ENST00000357604 APAF1O14727 1248 aa11.7□□□□□ -0.54
UPF2-202ENST00000357604 SETD1AO15047 1707 aaKnown RBP11.69□□□□□ -0.54
UPF2-202ENST00000357604 EIF2S2P20042 333 aaKnown RBP11.69□□□□□ -0.54
UPF2-202ENST00000357604 ABCC6O95255 1503 aa11.69□□□□□ -0.54
UPF2-202ENST00000357604 IL13P35225 146 aa11.69□□□□□ -0.54
UPF2-202ENST00000357604 KLHL34Q8N239 644 aa11.69□□□□□ -0.54
UPF2-202ENST00000357604 IFT57Q9NWB7 429 aa11.69□□□□□ -0.54
UPF2-202ENST00000357604 BABAM1Q9NWV8 329 aa11.69□□□□□ -0.54
UPF2-202ENST00000357604 MED1Q15648 1581 aaPredicted RBP11.68□□□□□ -0.54
UPF2-202ENST00000357604 ATP6V1AP38606 617 aa11.68□□□□□ -0.54
UPF2-202ENST00000357604 HSP90AB3PQ58FF7 597 aa11.68□□□□□ -0.54
UPF2-202ENST00000357604 ADAMTS8Q9UP79 889 aa11.68□□□□□ -0.54
UPF2-202ENST00000357604 G3V3G9 751 aa11.67□□□□□ -0.54
UPF2-202ENST00000357604 DCAF8Q5TAQ9 597 aa11.67□□□□□ -0.54
UPF2-202ENST00000357604 CCNL1Q9UK58 526 aaPredicted RBP11.67□□□□□ -0.54
UPF2-202ENST00000357604 CT47B1P0C2W7 299 aaPredicted RBP11.67□□□□□ -0.54
UPF2-202ENST00000357604 FNBP4Q8N3X1 1017 aaPredicted RBP11.67□□□□□ -0.54
UPF2-202ENST00000357604 PLEKHG2Q9H7P9 1386 aa11.67□□□□□ -0.54
UPF2-202ENST00000357604 NBPF6Q5VWK0 638 aa11.66□□□□□ -0.54
UPF2-202ENST00000357604 NBPF4Q96M43 638 aa11.66□□□□□ -0.54
UPF2-202ENST00000357604 RNMTO43148 476 aaKnown RBP11.66□□□□□ -0.54
UPF2-202ENST00000357604 TMPOP42166 694 aaKnown RBP11.66□□□□□ -0.54
UPF2-202ENST00000357604 TAF7LQ5H9L4 462 aa11.66□□□□□ -0.54
UPF2-202ENST00000357604 SMC4Q9NTJ3 1288 aa11.66□□□□□ -0.54
UPF2-202ENST00000357604 SOS1Q07889 1333 aaPredicted RBP11.66□□□□□ -0.54
UPF2-202ENST00000357604 NCAPD2Q15021 1401 aa11.66□□□□□ -0.54
UPF2-202ENST00000357604 RFC4P35249 363 aa11.66□□□□□ -0.54
UPF2-202ENST00000357604 RIC3Q7Z5B4 369 aa11.65□□□□□ -0.54
UPF2-202ENST00000357604 SNRPA1P09661 255 aaKnown RBP11.65□□□□□ -0.54
UPF2-202ENST00000357604 TOPAZ1Q8N9V7 1692 aa11.65□□□□□ -0.54
UPF2-202ENST00000357604 IL16Q14005 1332 aa11.64□□□□□ -0.55
UPF2-202ENST00000357604 IGSF1Q8N6C5 1336 aa11.64□□□□□ -0.55
UPF2-202ENST00000357604 OS9Q13438 667 aaPredicted RBP11.64□□□□□ -0.55
UPF2-202ENST00000357604 API5Q9BZZ5 524 aaKnown RBP11.64□□□□□ -0.55
UPF2-202ENST00000357604 TFCP2L1Q9NZI6 479 aa11.64□□□□□ -0.55
UPF2-202ENST00000357604 RTCBQ9Y3I0 505 aaKnown RBP11.64□□□□□ -0.55
UPF2-202ENST00000357604 NHSL1Q5SYE7 1610 aa11.64□□□□□ -0.55
UPF2-202ENST00000357604 PER1O15534 1290 aaPredicted RBP11.64□□□□□ -0.55
UPF2-202ENST00000357604 SLC27A3Q5K4L6 730 aa11.63□□□□□ -0.55
UPF2-202ENST00000357604 PHKG2P15735 406 aa11.63□□□□□ -0.55
UPF2-202ENST00000357604 SLIT3O75094 1523 aa11.63□□□□□ -0.55
UPF2-202ENST00000357604 FRAT1Q92837 279 aaPredicted RBP11.63□□□□□ -0.55
UPF2-202ENST00000357604 ZNF428Q96B54 188 aa11.63□□□□□ -0.55
UPF2-202ENST00000357604 SLC52A2Q9HAB3 445 aa11.62□□□□□ -0.55
UPF2-202ENST00000357604 SHPRHQ149N8 1683 aa11.62□□□□□ -0.55
UPF2-202ENST00000357604 ST5P78524 1137 aa11.62□□□□□ -0.55
UPF2-202ENST00000357604 MTHFSDQ2M296 383 aaKnown RBP11.62□□□□□ -0.55
UPF2-202ENST00000357604 MON2Q7Z3U7 1717 aa11.62□□□□□ -0.55
UPF2-202ENST00000357604 HDGFL1Q5TGJ6 251 aa11.62□□□□□ -0.55
UPF2-202ENST00000357604 KIF16BQ96L93 1317 aa11.61□□□□□ -0.55
UPF2-202ENST00000357604 RSPH6AQ9H0K4 717 aa11.61□□□□□ -0.55
UPF2-202ENST00000357604 AKAP12Q02952 1782 aa11.61□□□□□ -0.55
UPF2-202ENST00000357604 NCBP3Q53F19 620 aaKnown RBP11.61□□□□□ -0.55
UPF2-202ENST00000357604 TRAPPC3LQ5T215 181 aa11.61□□□□□ -0.55
UPF2-202ENST00000357604 HYPKQ9NX55 129 aa11.61□□□□□ -0.55
UPF2-202ENST00000357604 PARP3Q9Y6F1 533 aa11.61□□□□□ -0.55
UPF2-202ENST00000357604 TRIM37O94972 964 aa11.61□□□□□ -0.55
UPF2-202ENST00000357604 FBLN1P23142 703 aa11.6□□□□□ -0.55
UPF2-202ENST00000357604 PRIM1P49642 420 aaKnown RBP11.6□□□□□ -0.55
UPF2-202ENST00000357604 MCM10Q7L590 875 aa11.6□□□□□ -0.55
UPF2-202ENST00000357604 PTCD1O75127 700 aaKnown RBP11.6□□□□□ -0.55
UPF2-202ENST00000357604 EIF5BO60841 1220 aaKnown RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms