RNA–Protein interactions for RNA: ENST00000344391.9

CEACAM1-202, Transcript of carcinoembryonic antigen related cell adhesion molecule 1, humanhuman

TSL 1 (best)

Gene CEACAM1, Length 1,619 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CEACAM1-202ENST00000344391 CARD10Q9BWT7 1032 aa21.32■■□□□ 1
CEACAM1-202ENST00000344391 HTATSF1O43719 755 aaKnown RBP21.31■■□□□ 1
CEACAM1-202ENST00000344391 MYH16Q9H6N6 1097 aa21.31■■□□□ 1
CEACAM1-202ENST00000344391 MEGF6O75095 1541 aa21.31■■□□□ 1
CEACAM1-202ENST00000344391 DCTN1Q14203 1278 aa21.3■■□□□ 1
CEACAM1-202ENST00000344391 CRB1P82279 1406 aa21.3■■□□□ 1
CEACAM1-202ENST00000344391 SPATA31A6Q5VVP1 1343 aa21.3■■□□□ 1
CEACAM1-202ENST00000344391 MAP3K5Q99683 1374 aa21.3■■□□□ 1
CEACAM1-202ENST00000344391 GNAT3A8MTJ3 354 aa21.29■■□□□ 1
CEACAM1-202ENST00000344391 TATP17735 454 aaPredicted RBP21.29■■□□□ 1
CEACAM1-202ENST00000344391 NRAPQ86VF7 1730 aa21.29■■□□□ 1
CEACAM1-202ENST00000344391 NWD2Q9ULI1 1742 aa21.29■■□□□ 1
CEACAM1-202ENST00000344391 MCM10Q7L590 875 aa21.29■■□□□ 1
CEACAM1-202ENST00000344391 RTF1Q92541 710 aaKnown RBP21.29■■□□□ 1
CEACAM1-202ENST00000344391 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.28■■□□□ 1
CEACAM1-202ENST00000344391 SUPT16HQ9Y5B9 1047 aaKnown RBP21.28■■□□□ 1
CEACAM1-202ENST00000344391 PKD1L3Q7Z443 1732 aa21.27■■□□□ 1
CEACAM1-202ENST00000344391 PARP4Q9UKK3 1724 aaKnown RBP21.27■■□□□ 1
CEACAM1-202ENST00000344391 ZNF853P0CG23 659 aa21.27■■□□□ 1
CEACAM1-202ENST00000344391 ZNF530Q6P9A1 599 aaPredicted RBP21.27■■□□□ 1
CEACAM1-202ENST00000344391 IFT57Q9NWB7 429 aa21.27■■□□□ 1
CEACAM1-202ENST00000344391 SLIT2O94813 1529 aa21.27■■□□□ 1
CEACAM1-202ENST00000344391 AKAP4Q5JQC9 854 aa21.26■□□□□ 0.99
CEACAM1-202ENST00000344391 FANCIQ9NVI1 1328 aa21.26■□□□□ 0.99
CEACAM1-202ENST00000344391 LRRC37A3O60309 1634 aa21.26■□□□□ 0.99
CEACAM1-202ENST00000344391 GNAI1P63096 354 aa21.26■□□□□ 0.99
CEACAM1-202ENST00000344391 TSR2Q969E8 191 aaKnown RBP21.26■□□□□ 0.99
CEACAM1-202ENST00000344391 RCAN3Q9UKA8 241 aa21.26■□□□□ 0.99
CEACAM1-202ENST00000344391 OVOS2A0A0G2JMS6 1433 aa21.25■□□□□ 0.99
CEACAM1-202ENST00000344391 CFAP44Q96MT7 982 aa21.25■□□□□ 0.99
CEACAM1-202ENST00000344391 LRP6O75581 1613 aa21.25■□□□□ 0.99
CEACAM1-202ENST00000344391 VIRMAQ69YN4 1812 aaKnown RBP21.24■□□□□ 0.99
CEACAM1-202ENST00000344391 IL17REQ8NFR9 667 aa21.24■□□□□ 0.99
CEACAM1-202ENST00000344391 SPG7Q9UQ90 795 aa21.24■□□□□ 0.99
CEACAM1-202ENST00000344391 IL2RBP14784 551 aa21.22■□□□□ 0.99
CEACAM1-202ENST00000344391 C1orf141Q5JVX7 400 aa21.22■□□□□ 0.99
CEACAM1-202ENST00000344391 LAS1LQ9Y4W2 734 aaKnown RBP21.22■□□□□ 0.99
CEACAM1-202ENST00000344391 CEMIPQ8WUJ3 1361 aa21.22■□□□□ 0.99
CEACAM1-202ENST00000344391 RNF123Q5XPI4 1314 aa21.21■□□□□ 0.99
CEACAM1-202ENST00000344391 ADAMTS7Q9UKP4 1686 aa21.2■□□□□ 0.98
CEACAM1-202ENST00000344391 CHL1O00533 1208 aa21.2■□□□□ 0.98
CEACAM1-202ENST00000344391 MBIPQ9NS73 344 aa21.2■□□□□ 0.98
CEACAM1-202ENST00000344391 USP35Q9P2H5 1018 aa21.2■□□□□ 0.98
CEACAM1-202ENST00000344391 EXOSC9Q06265 439 aaKnown RBP21.19■□□□□ 0.98
CEACAM1-202ENST00000344391 NGLY1Q96IV0 654 aa21.19■□□□□ 0.98
CEACAM1-202ENST00000344391 C8orf37Q96NL8 207 aa21.19■□□□□ 0.98
CEACAM1-202ENST00000344391 LGR6Q9HBX8 967 aa21.19■□□□□ 0.98
CEACAM1-202ENST00000344391 WNK3Q9BYP7 1800 aa21.19■□□□□ 0.98
CEACAM1-202ENST00000344391 PHKG2P15735 406 aa21.18■□□□□ 0.98
CEACAM1-202ENST00000344391 IFNL2Q8IZJ0 200 aa21.18■□□□□ 0.98
CEACAM1-202ENST00000344391 GTF3C3Q9Y5Q9 886 aa21.18■□□□□ 0.98
CEACAM1-202ENST00000344391 DISP2A7MBM2 1401 aa21.18■□□□□ 0.98
CEACAM1-202ENST00000344391 SHANK3Q9BYB0 1731 aa21.18■□□□□ 0.98
CEACAM1-202ENST00000344391 MPRIPQ6WCQ1 1025 aa21.18■□□□□ 0.98
CEACAM1-202ENST00000344391 FNBP4Q8N3X1 1017 aaPredicted RBP21.18■□□□□ 0.98
CEACAM1-202ENST00000344391 ZCRB1Q8TBF4 217 aaKnown RBP21.18■□□□□ 0.98
CEACAM1-202ENST00000344391 SCN11AQ9UI33 1791 aa21.17■□□□□ 0.98
CEACAM1-202ENST00000344391 SPATA31A1Q5TZJ5 1347 aa21.17■□□□□ 0.98
CEACAM1-202ENST00000344391 CYP27B1O15528 508 aa21.17■□□□□ 0.98
CEACAM1-202ENST00000344391 RNMTO43148 476 aaKnown RBP21.17■□□□□ 0.98
CEACAM1-202ENST00000344391 CT47B1P0C2W7 299 aaPredicted RBP21.17■□□□□ 0.98
CEACAM1-202ENST00000344391 UNC5CLQ8IV45 518 aa21.17■□□□□ 0.98
CEACAM1-202ENST00000344391 BCL9LQ86UU0 1499 aa21.17■□□□□ 0.98
CEACAM1-202ENST00000344391 SPATA31A5Q5VU36 1347 aa21.16■□□□□ 0.98
CEACAM1-202ENST00000344391 SPATA31A7Q8IWB4 1347 aa21.16■□□□□ 0.98
CEACAM1-202ENST00000344391 TAF7Q15545 349 aaPredicted RBP21.15■□□□□ 0.98
CEACAM1-202ENST00000344391 PCDH11XQ9BZA7 1347 aa21.15■□□□□ 0.98
CEACAM1-202ENST00000344391 PCDH11YQ9BZA8 1340 aa21.15■□□□□ 0.98
CEACAM1-202ENST00000344391 BABAM1Q9NWV8 329 aa21.15■□□□□ 0.98
CEACAM1-202ENST00000344391 THRAP3Q9Y2W1 955 aaKnown RBP21.15■□□□□ 0.98
CEACAM1-202ENST00000344391 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.14■□□□□ 0.98
CEACAM1-202ENST00000344391 SIPA1L3O60292 1781 aaPredicted RBP21.13■□□□□ 0.97
CEACAM1-202ENST00000344391 KDM6AO15550 1401 aaPredicted RBP21.13■□□□□ 0.97
CEACAM1-202ENST00000344391 HSP90AB1P08238 724 aaKnown RBP21.13■□□□□ 0.97
CEACAM1-202ENST00000344391 MIS18AQ9NYP9 233 aa21.13■□□□□ 0.97
CEACAM1-202ENST00000344391 TSPYL4Q9UJ04 414 aa21.13■□□□□ 0.97
CEACAM1-202ENST00000344391 NEFLP07196 543 aa21.12■□□□□ 0.97
CEACAM1-202ENST00000344391 RRP1P56182 461 aaKnown RBP21.12■□□□□ 0.97
CEACAM1-202ENST00000344391 TEFQ10587 303 aa21.12■□□□□ 0.97
CEACAM1-202ENST00000344391 MEX3CQ5U5Q3 659 aaKnown RBP21.12■□□□□ 0.97
CEACAM1-202ENST00000344391 RARSP54136 660 aaKnown RBP21.11■□□□□ 0.97
CEACAM1-202ENST00000344391 VPS72Q15906 364 aa21.11■□□□□ 0.97
CEACAM1-202ENST00000344391 DCAF5Q96JK2 942 aa21.11■□□□□ 0.97
CEACAM1-202ENST00000344391 CDCA7Q9BWT1 371 aaPredicted RBP21.11■□□□□ 0.97
CEACAM1-202ENST00000344391 KDM3BQ7LBC6 1761 aa21.11■□□□□ 0.97
CEACAM1-202ENST00000344391 NKX1-1Q15270 411 aaPredicted RBP21.1■□□□□ 0.97
CEACAM1-202ENST00000344391 C8orf58Q8NAV2 365 aa21.1■□□□□ 0.97
CEACAM1-202ENST00000344391 USP21Q9UK80 565 aa21.1■□□□□ 0.97
CEACAM1-202ENST00000344391 VAMP4O75379 141 aa21.09■□□□□ 0.97
CEACAM1-202ENST00000344391 BCAR3O75815 825 aa21.09■□□□□ 0.97
CEACAM1-202ENST00000344391 BARGINQ6ZT62 677 aa21.09■□□□□ 0.97
CEACAM1-202ENST00000344391 TSPYL6Q8N831 410 aa21.09■□□□□ 0.97
CEACAM1-202ENST00000344391 CCDC9Q9Y3X0 531 aaKnown RBP21.09■□□□□ 0.97
CEACAM1-202ENST00000344391 FKBP8Q14318 412 aa21.08■□□□□ 0.97
CEACAM1-202ENST00000344391 DDX54Q8TDD1 881 aaKnown RBP21.08■□□□□ 0.97
CEACAM1-202ENST00000344391 ZNF428Q96B54 188 aa21.08■□□□□ 0.97
CEACAM1-202ENST00000344391 MRC1P22897 1456 aa21.08■□□□□ 0.97
CEACAM1-202ENST00000344391 TWISTNBQ3B726 338 aaPredicted RBP21.07■□□□□ 0.96
CEACAM1-202ENST00000344391 EXOC5O00471 708 aa21.07■□□□□ 0.96
CEACAM1-202ENST00000344391 SLC52A2Q9HAB3 445 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms