RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 IGSF1Q8N6C5 1336 aa19.11■□□□□ 0.65
TPM3-208ENST00000341485 LMOD3Q0VAK6 560 aa19.11■□□□□ 0.65
TPM3-208ENST00000341485 PDZRN3Q9UPQ7 1066 aa19.11■□□□□ 0.65
TPM3-208ENST00000341485 ATF7IPQ6VMQ6 1270 aa19.1■□□□□ 0.65
TPM3-208ENST00000341485 NOB1Q9ULX3 412 aaKnown RBP19.1■□□□□ 0.65
TPM3-208ENST00000341485 PHRF1Q9P1Y6 1649 aaKnown RBP19.1■□□□□ 0.65
TPM3-208ENST00000341485 ARHGEF25Q86VW2 580 aa19.09■□□□□ 0.65
TPM3-208ENST00000341485 SPATA31A3Q5VYP0 1347 aa19.09■□□□□ 0.65
TPM3-208ENST00000341485 DEKP35659 375 aaKnown RBP19.09■□□□□ 0.65
TPM3-208ENST00000341485 MED1Q15648 1581 aaPredicted RBP19.08■□□□□ 0.65
TPM3-208ENST00000341485 DLG5Q8TDM6 1919 aa19.08■□□□□ 0.64
TPM3-208ENST00000341485 CALD1Q05682 793 aaKnown RBP19.08■□□□□ 0.64
TPM3-208ENST00000341485 RTL5Q5HYW3 569 aaPredicted RBP19.08■□□□□ 0.64
TPM3-208ENST00000341485 KDRP35968 1356 aa19.08■□□□□ 0.64
TPM3-208ENST00000341485 SLC4A3P48751 1232 aa19.07■□□□□ 0.64
TPM3-208ENST00000341485 ALDH1L2Q3SY69 923 aa19.07■□□□□ 0.64
TPM3-208ENST00000341485 ITPRIPQ8IWB1 547 aa19.07■□□□□ 0.64
TPM3-208ENST00000341485 DDX19BQ9UMR2 479 aa19.07■□□□□ 0.64
TPM3-208ENST00000341485 KIF16BQ96L93 1317 aa19.06■□□□□ 0.64
TPM3-208ENST00000341485 THUMPD2Q9BTF0 503 aaKnown RBP19.06■□□□□ 0.64
TPM3-208ENST00000341485 ZC3H6P61129 1189 aaKnown RBP19.05■□□□□ 0.64
TPM3-208ENST00000341485 TMEM57Q8N5G2 664 aa19.05■□□□□ 0.64
TPM3-208ENST00000341485 SEC24BO95487 1268 aa19.05■□□□□ 0.64
TPM3-208ENST00000341485 SOS2Q07890 1332 aaPredicted RBP19.04■□□□□ 0.64
TPM3-208ENST00000341485 IPO8O15397 1037 aaKnown RBP19.03■□□□□ 0.64
TPM3-208ENST00000341485 HDAC1Q13547 482 aaPredicted RBP19.03■□□□□ 0.64
TPM3-208ENST00000341485 USHBP1Q8N6Y0 703 aa19.03■□□□□ 0.64
TPM3-208ENST00000341485 CABLES1Q8TDN4 633 aa19.03■□□□□ 0.64
TPM3-208ENST00000341485 FAM83GA6ND36 823 aa19.02■□□□□ 0.63
TPM3-208ENST00000341485 BRPF1P55201 1214 aaPredicted RBP19.02■□□□□ 0.63
TPM3-208ENST00000341485 GAS2L2Q8NHY3 880 aa19.02■□□□□ 0.63
TPM3-208ENST00000341485 ANKRD24Q8TF21 1146 aa19.02■□□□□ 0.63
TPM3-208ENST00000341485 ZNF428Q96B54 188 aa19.02■□□□□ 0.63
TPM3-208ENST00000341485 IFT57Q9NWB7 429 aa19.02■□□□□ 0.63
TPM3-208ENST00000341485 ZNF853P0CG23 659 aa19.01■□□□□ 0.63
TPM3-208ENST00000341485 MTHFSDQ2M296 383 aaKnown RBP19.01■□□□□ 0.63
TPM3-208ENST00000341485 DAXXQ9UER7 740 aaPredicted RBP19.01■□□□□ 0.63
TPM3-208ENST00000341485 LTBP4Q8N2S1 1624 aa19.01■□□□□ 0.63
TPM3-208ENST00000341485 VAMP4O75379 141 aa19.01■□□□□ 0.63
TPM3-208ENST00000341485 GNAI1P63096 354 aa19.01■□□□□ 0.63
TPM3-208ENST00000341485 NBPF6Q5VWK0 638 aa19.01■□□□□ 0.63
TPM3-208ENST00000341485 NBPF4Q96M43 638 aa19.01■□□□□ 0.63
TPM3-208ENST00000341485 ZBTB40Q9NUA8 1239 aa19.01■□□□□ 0.63
TPM3-208ENST00000341485 NHSL1Q5SYE7 1610 aa19■□□□□ 0.63
TPM3-208ENST00000341485 CRYBG1Q9Y4K1 1723 aa19■□□□□ 0.63
TPM3-208ENST00000341485 DCTN1Q14203 1278 aa19■□□□□ 0.63
TPM3-208ENST00000341485 TSPYL6Q8N831 410 aa18.99■□□□□ 0.63
TPM3-208ENST00000341485 RTF1Q92541 710 aaKnown RBP18.99■□□□□ 0.63
TPM3-208ENST00000341485 LRRC59Q96AG4 307 aaKnown RBP18.99■□□□□ 0.63
TPM3-208ENST00000341485 MBIPQ9NS73 344 aa18.99■□□□□ 0.63
TPM3-208ENST00000341485 AXIN2Q9Y2T1 843 aa18.99■□□□□ 0.63
TPM3-208ENST00000341485 RGPD2P0DJD1 1756 aa18.99■□□□□ 0.63
TPM3-208ENST00000341485 HAP1P54257 671 aaPredicted RBP18.99■□□□□ 0.63
TPM3-208ENST00000341485 MRPL50Q8N5N7 158 aaKnown RBP18.99■□□□□ 0.63
TPM3-208ENST00000341485 USP35Q9P2H5 1018 aa18.99■□□□□ 0.63
TPM3-208ENST00000341485 RGPD5Q99666 1765 aa18.98■□□□□ 0.63
TPM3-208ENST00000341485 MCM10Q7L590 875 aa18.97■□□□□ 0.63
TPM3-208ENST00000341485 SMC5Q8IY18 1101 aa18.96■□□□□ 0.63
TPM3-208ENST00000341485 CFAP44Q96MT7 982 aa18.96■□□□□ 0.63
TPM3-208ENST00000341485 KIAA0232Q92628 1395 aa18.95■□□□□ 0.62
TPM3-208ENST00000341485 ERBB3P21860 1342 aa18.95■□□□□ 0.62
TPM3-208ENST00000341485 CHRNA2Q15822 529 aa18.95■□□□□ 0.62
TPM3-208ENST00000341485 ROBO1Q9Y6N7 1651 aa18.95■□□□□ 0.62
TPM3-208ENST00000341485 CPDO75976 1380 aa18.94■□□□□ 0.62
TPM3-208ENST00000341485 ABCC6O95255 1503 aa18.94■□□□□ 0.62
TPM3-208ENST00000341485 ARHGAP45Q92619 1136 aa18.94■□□□□ 0.62
TPM3-208ENST00000341485 COL18A1P39060 1754 aa18.93■□□□□ 0.62
TPM3-208ENST00000341485 GNAT3A8MTJ3 354 aa18.93■□□□□ 0.62
TPM3-208ENST00000341485 ELL2O00472 640 aaPredicted RBP18.93■□□□□ 0.62
TPM3-208ENST00000341485 HTATSF1O43719 755 aaKnown RBP18.93■□□□□ 0.62
TPM3-208ENST00000341485 CSB-PGBD3P0DP91 1061 aa18.93■□□□□ 0.62
TPM3-208ENST00000341485 CAMTA1Q9Y6Y1 1673 aa18.93■□□□□ 0.62
TPM3-208ENST00000341485 TWISTNBQ3B726 338 aaPredicted RBP18.93■□□□□ 0.62
TPM3-208ENST00000341485 C8orf58Q8NAV2 365 aa18.93■□□□□ 0.62
TPM3-208ENST00000341485 MAP3K5Q99683 1374 aa18.92■□□□□ 0.62
TPM3-208ENST00000341485 TBC1D32Q96NH3 1257 aa18.91■□□□□ 0.62
TPM3-208ENST00000341485 PRDM11Q9NQV5 511 aa18.91■□□□□ 0.62
TPM3-208ENST00000341485 NLRP2Q9NX02 1062 aa18.91■□□□□ 0.62
TPM3-208ENST00000341485 NCAPD2Q15021 1401 aa18.91■□□□□ 0.62
TPM3-208ENST00000341485 NFKBIBQ15653 356 aa18.91■□□□□ 0.62
TPM3-208ENST00000341485 PLEKHO1Q53GL0 409 aaPredicted RBP18.91■□□□□ 0.62
TPM3-208ENST00000341485 ABCA3Q99758 1704 aa18.91■□□□□ 0.62
TPM3-208ENST00000341485 ZBTB7BO15156 539 aaPredicted RBP18.9■□□□□ 0.62
TPM3-208ENST00000341485 ABCC4O15439 1325 aa18.9■□□□□ 0.62
TPM3-208ENST00000341485 CRB1P82279 1406 aa18.9■□□□□ 0.62
TPM3-208ENST00000341485 UPF2Q9HAU5 1272 aaKnown RBP18.89■□□□□ 0.62
TPM3-208ENST00000341485 FAM208AQ9UK61 1670 aaKnown RBP18.89■□□□□ 0.61
TPM3-208ENST00000341485 NUCB1Q02818 461 aa18.89■□□□□ 0.61
TPM3-208ENST00000341485 AMOTQ4VCS5 1084 aa18.89■□□□□ 0.61
TPM3-208ENST00000341485 AHDC1Q5TGY3 1603 aaPredicted RBP18.88■□□□□ 0.61
TPM3-208ENST00000341485 LMO7Q8WWI1 1683 aa18.88■□□□□ 0.61
TPM3-208ENST00000341485 CHL1O00533 1208 aa18.88■□□□□ 0.61
TPM3-208ENST00000341485 ZNF530Q6P9A1 599 aaPredicted RBP18.87■□□□□ 0.61
TPM3-208ENST00000341485 RAPGEF4Q8WZA2 1011 aa18.86■□□□□ 0.61
TPM3-208ENST00000341485 BCL11AQ9H165 835 aa18.86■□□□□ 0.61
TPM3-208ENST00000341485 BECN1Q14457 450 aa18.86■□□□□ 0.61
TPM3-208ENST00000341485 CHMP4BQ9H444 224 aaKnown RBP18.86■□□□□ 0.61
TPM3-208ENST00000341485 TSPYL4Q9UJ04 414 aa18.86■□□□□ 0.61
TPM3-208ENST00000341485 LRRC37A3O60309 1634 aa18.86■□□□□ 0.61
TPM3-208ENST00000341485 TOM1O60784 492 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms