RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 SPINK5Q9NQ38 1064 aaPredicted RBP13.07□□□□□ -0.32
HMGB3-201ENST00000325307 LAS1LQ9Y4W2 734 aaKnown RBP13.07□□□□□ -0.32
HMGB3-201ENST00000325307 SLFN5Q08AF3 891 aa13.06□□□□□ -0.32
HMGB3-201ENST00000325307 DCTN1Q14203 1278 aa13.06□□□□□ -0.32
HMGB3-201ENST00000325307 PLEKHO1Q53GL0 409 aaPredicted RBP13.06□□□□□ -0.32
HMGB3-201ENST00000325307 TATP17735 454 aaPredicted RBP13.06□□□□□ -0.32
HMGB3-201ENST00000325307 CALD1Q05682 793 aaKnown RBP13.05□□□□□ -0.32
HMGB3-201ENST00000325307 ZNF530Q6P9A1 599 aaPredicted RBP13.05□□□□□ -0.32
HMGB3-201ENST00000325307 MCM10Q7L590 875 aa13.05□□□□□ -0.32
HMGB3-201ENST00000325307 MYH16Q9H6N6 1097 aa13.05□□□□□ -0.32
HMGB3-201ENST00000325307 AMOTQ4VCS5 1084 aa13.05□□□□□ -0.32
HMGB3-201ENST00000325307 C8orf37Q96NL8 207 aa13.05□□□□□ -0.32
HMGB3-201ENST00000325307 LMO7Q8WWI1 1683 aa13.04□□□□□ -0.32
HMGB3-201ENST00000325307 DUSP27Q5VZP5 1158 aa13.04□□□□□ -0.32
HMGB3-201ENST00000325307 NGLY1Q96IV0 654 aa13.04□□□□□ -0.32
HMGB3-201ENST00000325307 GNAT3A8MTJ3 354 aa13.04□□□□□ -0.32
HMGB3-201ENST00000325307 C1orf141Q5JVX7 400 aa13.04□□□□□ -0.32
HMGB3-201ENST00000325307 MEX3CQ5U5Q3 659 aaKnown RBP13.04□□□□□ -0.32
HMGB3-201ENST00000325307 CARD10Q9BWT7 1032 aa13.04□□□□□ -0.32
HMGB3-201ENST00000325307 COL14A1Q05707 1796 aaKnown RBP13.03□□□□□ -0.32
HMGB3-201ENST00000325307 SPATA31A6Q5VVP1 1343 aa13.03□□□□□ -0.32
HMGB3-201ENST00000325307 CCDC9Q9Y3X0 531 aaKnown RBP13.03□□□□□ -0.32
HMGB3-201ENST00000325307 NCAPD2Q15021 1401 aa13.03□□□□□ -0.32
HMGB3-201ENST00000325307 TSR2Q969E8 191 aaKnown RBP13.02□□□□□ -0.32
HMGB3-201ENST00000325307 SPG7Q9UQ90 795 aa13.02□□□□□ -0.32
HMGB3-201ENST00000325307 MAP3K5Q99683 1374 aa13.02□□□□□ -0.33
HMGB3-201ENST00000325307 FAM208AQ9UK61 1670 aaKnown RBP13.01□□□□□ -0.33
HMGB3-201ENST00000325307 IL16Q14005 1332 aa13.01□□□□□ -0.33
HMGB3-201ENST00000325307 CRB1P82279 1406 aa13.01□□□□□ -0.33
HMGB3-201ENST00000325307 IL2RBP14784 551 aa13.01□□□□□ -0.33
HMGB3-201ENST00000325307 MEGF6O75095 1541 aa13□□□□□ -0.33
HMGB3-201ENST00000325307 GNAI1P63096 354 aa13□□□□□ -0.33
HMGB3-201ENST00000325307 IRX6P78412 446 aaPredicted RBP13□□□□□ -0.33
HMGB3-201ENST00000325307 TRMT2AQ8IZ69 625 aaKnown RBP13□□□□□ -0.33
HMGB3-201ENST00000325307 RCAN3Q9UKA8 241 aa13□□□□□ -0.33
HMGB3-201ENST00000325307 FANCIQ9NVI1 1328 aa13□□□□□ -0.33
HMGB3-201ENST00000325307 AKAP4Q5JQC9 854 aa13□□□□□ -0.33
HMGB3-201ENST00000325307 DLG5Q8TDM6 1919 aa13□□□□□ -0.33
HMGB3-201ENST00000325307 HTATSF1O43719 755 aaKnown RBP13□□□□□ -0.33
HMGB3-201ENST00000325307 NEFLP07196 543 aa12.99□□□□□ -0.33
HMGB3-201ENST00000325307 MPRIPQ6WCQ1 1025 aa12.99□□□□□ -0.33
HMGB3-201ENST00000325307 ANO8Q9HCE9 1232 aaPredicted RBP12.99□□□□□ -0.33
HMGB3-201ENST00000325307 IFT57Q9NWB7 429 aa12.99□□□□□ -0.33
HMGB3-201ENST00000325307 CFAP44Q96MT7 982 aa12.98□□□□□ -0.33
HMGB3-201ENST00000325307 IL17REQ8NFR9 667 aa12.98□□□□□ -0.33
HMGB3-201ENST00000325307 ZCRB1Q8TBF4 217 aaKnown RBP12.98□□□□□ -0.33
HMGB3-201ENST00000325307 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.98□□□□□ -0.33
HMGB3-201ENST00000325307 EXOSC9Q06265 439 aaKnown RBP12.97□□□□□ -0.33
HMGB3-201ENST00000325307 MBIPQ9NS73 344 aa12.97□□□□□ -0.33
HMGB3-201ENST00000325307 PLCH1Q4KWH8 1693 aa12.97□□□□□ -0.33
HMGB3-201ENST00000325307 TEFQ10587 303 aa12.97□□□□□ -0.33
HMGB3-201ENST00000325307 UNC5CLQ8IV45 518 aa12.97□□□□□ -0.33
HMGB3-201ENST00000325307 IFNL2Q8IZJ0 200 aa12.97□□□□□ -0.33
HMGB3-201ENST00000325307 DDX54Q8TDD1 881 aaKnown RBP12.97□□□□□ -0.33
HMGB3-201ENST00000325307 LGR6Q9HBX8 967 aa12.97□□□□□ -0.33
HMGB3-201ENST00000325307 MIS18AQ9NYP9 233 aa12.97□□□□□ -0.33
HMGB3-201ENST00000325307 LRP6O75581 1613 aa12.96□□□□□ -0.33
HMGB3-201ENST00000325307 OVOS2A0A0G2JMS6 1433 aa12.96□□□□□ -0.33
HMGB3-201ENST00000325307 TSPYL4Q9UJ04 414 aa12.96□□□□□ -0.33
HMGB3-201ENST00000325307 PHKG2P15735 406 aa12.96□□□□□ -0.34
HMGB3-201ENST00000325307 USP21Q9UK80 565 aa12.96□□□□□ -0.34
HMGB3-201ENST00000325307 SLIT2O94813 1529 aa12.95□□□□□ -0.34
HMGB3-201ENST00000325307 PCDH11XQ9BZA7 1347 aa12.95□□□□□ -0.34
HMGB3-201ENST00000325307 PCDH11YQ9BZA8 1340 aa12.95□□□□□ -0.34
HMGB3-201ENST00000325307 ZNF853P0CG23 659 aa12.95□□□□□ -0.34
HMGB3-201ENST00000325307 RNF123Q5XPI4 1314 aa12.95□□□□□ -0.34
HMGB3-201ENST00000325307 CYP27B1O15528 508 aa12.95□□□□□ -0.34
HMGB3-201ENST00000325307 RNMTO43148 476 aaKnown RBP12.95□□□□□ -0.34
HMGB3-201ENST00000325307 SPATA31A1Q5TZJ5 1347 aa12.94□□□□□ -0.34
HMGB3-201ENST00000325307 ELL2O00472 640 aaPredicted RBP12.94□□□□□ -0.34
HMGB3-201ENST00000325307 CHL1O00533 1208 aa12.94□□□□□ -0.34
HMGB3-201ENST00000325307 TAF7Q15545 349 aaPredicted RBP12.94□□□□□ -0.34
HMGB3-201ENST00000325307 A0A0G2JS52 829 aa12.94□□□□□ -0.34
HMGB3-201ENST00000325307 HSP90AB1P08238 724 aaKnown RBP12.94□□□□□ -0.34
HMGB3-201ENST00000325307 FNBP4Q8N3X1 1017 aaPredicted RBP12.93□□□□□ -0.34
HMGB3-201ENST00000325307 SPATA31A5Q5VU36 1347 aa12.93□□□□□ -0.34
HMGB3-201ENST00000325307 SPATA31A7Q8IWB4 1347 aa12.93□□□□□ -0.34
HMGB3-201ENST00000325307 PLEKHG2Q9H7P9 1386 aa12.93□□□□□ -0.34
HMGB3-201ENST00000325307 EXOC5O00471 708 aa12.92□□□□□ -0.34
HMGB3-201ENST00000325307 THRAP3Q9Y2W1 955 aaKnown RBP12.92□□□□□ -0.34
HMGB3-201ENST00000325307 AFF2P51816 1311 aa12.92□□□□□ -0.34
HMGB3-201ENST00000325307 PARP4Q9UKK3 1724 aaKnown RBP12.92□□□□□ -0.34
HMGB3-201ENST00000325307 DCAF5Q96JK2 942 aa12.92□□□□□ -0.34
HMGB3-201ENST00000325307 CEMIPQ8WUJ3 1361 aa12.92□□□□□ -0.34
HMGB3-201ENST00000325307 BCL2L13Q9BXK5 485 aa12.92□□□□□ -0.34
HMGB3-201ENST00000325307 BCL9LQ86UU0 1499 aa12.92□□□□□ -0.34
HMGB3-201ENST00000325307 VPS72Q15906 364 aa12.91□□□□□ -0.34
HMGB3-201ENST00000325307 CDCA7Q9BWT1 371 aaPredicted RBP12.91□□□□□ -0.34
HMGB3-201ENST00000325307 NWD2Q9ULI1 1742 aa12.91□□□□□ -0.34
HMGB3-201ENST00000325307 NRAPQ86VF7 1730 aa12.91□□□□□ -0.34
HMGB3-201ENST00000325307 BTBD11A6QL63 1104 aa12.91□□□□□ -0.34
HMGB3-201ENST00000325307 BCAR3O75815 825 aa12.91□□□□□ -0.34
HMGB3-201ENST00000325307 RRP1P56182 461 aaKnown RBP12.91□□□□□ -0.34
HMGB3-201ENST00000325307 FAM98CQ17RN3 349 aaKnown RBP12.91□□□□□ -0.34
HMGB3-201ENST00000325307 CT47B1P0C2W7 299 aaPredicted RBP12.9□□□□□ -0.34
HMGB3-201ENST00000325307 CANXP27824 592 aaKnown RBP12.9□□□□□ -0.34
HMGB3-201ENST00000325307 TWISTNBQ3B726 338 aaPredicted RBP12.9□□□□□ -0.34
HMGB3-201ENST00000325307 TSPYL6Q8N831 410 aa12.9□□□□□ -0.34
HMGB3-201ENST00000325307 C8orf58Q8NAV2 365 aa12.9□□□□□ -0.34
HMGB3-201ENST00000325307 PLIN1O60240 522 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms