RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 DYNC1I1O14576 645 aa13.63□□□□□ -0.23
VPS39-201ENST00000318006 LRRCC1Q9C099 1032 aa13.63□□□□□ -0.23
VPS39-201ENST00000318006 CGNQ9P2M7 1197 aaKnown RBP13.63□□□□□ -0.23
VPS39-201ENST00000318006 ZHX1Q9UKY1 873 aaPredicted RBP13.63□□□□□ -0.23
VPS39-201ENST00000318006 FILIP1LQ4L180 1135 aa13.62□□□□□ -0.23
VPS39-201ENST00000318006 NFXL1Q6ZNB6 911 aa13.62□□□□□ -0.23
VPS39-201ENST00000318006 KIF2AO00139 706 aaPredicted RBP13.62□□□□□ -0.23
VPS39-201ENST00000318006 UBXN4Q92575 508 aa13.62□□□□□ -0.23
VPS39-201ENST00000318006 ABCC11Q96J66 1382 aa13.62□□□□□ -0.23
VPS39-201ENST00000318006 DENND4BO75064 1496 aaPredicted RBP13.62□□□□□ -0.23
VPS39-201ENST00000318006 HIP1O00291 1037 aa13.62□□□□□ -0.23
VPS39-201ENST00000318006 RARSP54136 660 aaKnown RBP13.62□□□□□ -0.23
VPS39-201ENST00000318006 TMEM57Q8N5G2 664 aa13.62□□□□□ -0.23
VPS39-201ENST00000318006 DISP3Q9P2K9 1392 aa13.62□□□□□ -0.23
VPS39-201ENST00000318006 DISP1Q96F81 1524 aa13.61□□□□□ -0.23
VPS39-201ENST00000318006 SKIDA1Q1XH10 827 aa13.61□□□□□ -0.23
VPS39-201ENST00000318006 TMCO3Q6UWJ1 677 aa13.61□□□□□ -0.23
VPS39-201ENST00000318006 THUMPD2Q9BTF0 503 aaKnown RBP13.61□□□□□ -0.23
VPS39-201ENST00000318006 SPG7Q9UQ90 795 aa13.61□□□□□ -0.23
VPS39-201ENST00000318006 TARBP1Q13395 1621 aaKnown RBP13.61□□□□□ -0.23
VPS39-201ENST00000318006 ERICH2A1L162 156 aa13.61□□□□□ -0.23
VPS39-201ENST00000318006 RPAP2Q8IXW5 612 aaPredicted RBP13.61□□□□□ -0.23
VPS39-201ENST00000318006 NME9Q86XW9 330 aa13.61□□□□□ -0.23
VPS39-201ENST00000318006 SERPINC1P01008 464 aa13.6□□□□□ -0.23
VPS39-201ENST00000318006 STRN4Q9NRL3 753 aa13.6□□□□□ -0.23
VPS39-201ENST00000318006 NUP62CLQ9H1M0 184 aa13.6□□□□□ -0.23
VPS39-201ENST00000318006 NKTRP30414 1462 aaKnown RBP13.6□□□□□ -0.23
VPS39-201ENST00000318006 PLCH2O75038 1416 aa13.6□□□□□ -0.23
VPS39-201ENST00000318006 WASLO00401 505 aaPredicted RBP13.6□□□□□ -0.23
VPS39-201ENST00000318006 CABP4P57796 275 aa13.6□□□□□ -0.23
VPS39-201ENST00000318006 SSH1Q8WYL5 1049 aa13.6□□□□□ -0.23
VPS39-201ENST00000318006 TBC1D2Q9BYX2 928 aa13.6□□□□□ -0.23
VPS39-201ENST00000318006 VPS53Q5VIR6 699 aa13.59□□□□□ -0.23
VPS39-201ENST00000318006 STK38Q15208 465 aa13.59□□□□□ -0.23
VPS39-201ENST00000318006 C20orf194Q5TEA3 1177 aa13.59□□□□□ -0.23
VPS39-201ENST00000318006 DNAJC2Q99543 621 aaKnown RBP13.59□□□□□ -0.23
VPS39-201ENST00000318006 RBM42Q9BTD8 480 aaKnown RBP13.59□□□□□ -0.23
VPS39-201ENST00000318006 PPP6R1Q9UPN7 881 aa13.59□□□□□ -0.23
VPS39-201ENST00000318006 GNAT3A8MTJ3 354 aa13.59□□□□□ -0.23
VPS39-201ENST00000318006 KIF6Q6ZMV9 814 aa13.59□□□□□ -0.23
VPS39-201ENST00000318006 MYO6Q9UM54 1294 aa13.59□□□□□ -0.23
VPS39-201ENST00000318006 ALDH1L2Q3SY69 923 aa13.59□□□□□ -0.23
VPS39-201ENST00000318006 TOM1L2Q6ZVM7 507 aa13.59□□□□□ -0.23
VPS39-201ENST00000318006 FILIP1Q7Z7B0 1213 aa13.59□□□□□ -0.23
VPS39-201ENST00000318006 KCNH5Q8NCM2 988 aa13.59□□□□□ -0.23
VPS39-201ENST00000318006 NSD2O96028 1365 aa13.58□□□□□ -0.24
VPS39-201ENST00000318006 KDM5BQ9UGL1 1544 aa13.58□□□□□ -0.24
VPS39-201ENST00000318006 CBFA2T2O43439 604 aa13.58□□□□□ -0.24
VPS39-201ENST00000318006 CYP46A1Q9Y6A2 500 aa13.58□□□□□ -0.24
VPS39-201ENST00000318006 PTPN14Q15678 1187 aa13.58□□□□□ -0.24
VPS39-201ENST00000318006 CEP57L1Q8IYX8 460 aa13.58□□□□□ -0.24
VPS39-201ENST00000318006 EMILIN1Q9Y6C2 1016 aa13.58□□□□□ -0.24
VPS39-201ENST00000318006 BTBD11A6QL63 1104 aa13.57□□□□□ -0.24
VPS39-201ENST00000318006 PPP4R3BQ5MIZ7 849 aa13.57□□□□□ -0.24
VPS39-201ENST00000318006 MEX3CQ5U5Q3 659 aaKnown RBP13.57□□□□□ -0.24
VPS39-201ENST00000318006 MCM10Q7L590 875 aa13.57□□□□□ -0.24
VPS39-201ENST00000318006 TNPO1Q92973 898 aaKnown RBP13.57□□□□□ -0.24
VPS39-201ENST00000318006 DUSP27Q5VZP5 1158 aa13.57□□□□□ -0.24
VPS39-201ENST00000318006 RALGAPBQ86X10 1494 aa13.57□□□□□ -0.24
VPS39-201ENST00000318006 PIP4K2AP48426 406 aaPredicted RBP13.57□□□□□ -0.24
VPS39-201ENST00000318006 NUP160Q12769 1436 aa13.57□□□□□ -0.24
VPS39-201ENST00000318006 SAMD9Q5K651 1589 aa13.57□□□□□ -0.24
VPS39-201ENST00000318006 SRGAP3O43295 1099 aa13.57□□□□□ -0.24
VPS39-201ENST00000318006 OFD1O75665 1012 aa13.57□□□□□ -0.24
VPS39-201ENST00000318006 ANKRD1Q15327 319 aa13.57□□□□□ -0.24
VPS39-201ENST00000318006 LARP1BQ659C4 914 aaKnown RBP13.57□□□□□ -0.24
VPS39-201ENST00000318006 PRDM11Q9NQV5 511 aa13.57□□□□□ -0.24
VPS39-201ENST00000318006 TBC1D2BQ9UPU7 963 aa13.57□□□□□ -0.24
VPS39-201ENST00000318006 PDIA4P13667 645 aaKnown RBP13.56□□□□□ -0.24
VPS39-201ENST00000318006 CEBPZQ03701 1054 aaKnown RBP13.56□□□□□ -0.24
VPS39-201ENST00000318006 FAM177A1Q8N128 213 aaPredicted RBP13.56□□□□□ -0.24
VPS39-201ENST00000318006 PRIMPOLQ96LW4 560 aa13.56□□□□□ -0.24
VPS39-201ENST00000318006 TCOF1Q13428 1488 aaKnown RBP13.56□□□□□ -0.24
VPS39-201ENST00000318006 GOLGA6L7A0A1B0GV03 622 aa13.56□□□□□ -0.24
VPS39-201ENST00000318006 GOLGA6L10A6NI86 522 aa13.56□□□□□ -0.24
VPS39-201ENST00000318006 MAP3K11Q16584 847 aa13.56□□□□□ -0.24
VPS39-201ENST00000318006 KIF18AQ8NI77 898 aa13.56□□□□□ -0.24
VPS39-201ENST00000318006 CCDC102AQ96A19 550 aa13.56□□□□□ -0.24
VPS39-201ENST00000318006 RBM33Q96EV2 1170 aaKnown RBP13.56□□□□□ -0.24
VPS39-201ENST00000318006 ITSN2Q9NZM3 1697 aa13.56□□□□□ -0.24
VPS39-201ENST00000318006 PPFIBP1Q86W92 1011 aa13.56□□□□□ -0.24
VPS39-201ENST00000318006 JMYQ8N9B5 988 aa13.56□□□□□ -0.24
VPS39-201ENST00000318006 DDX54Q8TDD1 881 aaKnown RBP13.56□□□□□ -0.24
VPS39-201ENST00000318006 DUOX2Q9NRD8 1548 aa13.55□□□□□ -0.24
VPS39-201ENST00000318006 MYL6BP14649 208 aa13.55□□□□□ -0.24
VPS39-201ENST00000318006 SPATA32Q96LK8 384 aa13.55□□□□□ -0.24
VPS39-201ENST00000318006 MIS18AQ9NYP9 233 aa13.55□□□□□ -0.24
VPS39-201ENST00000318006 AMOTL2Q9Y2J4 779 aa13.55□□□□□ -0.24
VPS39-201ENST00000318006 PLCD4Q9BRC7 762 aa13.55□□□□□ -0.24
VPS39-201ENST00000318006 SIL1Q9H173 461 aa13.55□□□□□ -0.24
VPS39-201ENST00000318006 DHX16O60231 1041 aaKnown RBP13.55□□□□□ -0.24
VPS39-201ENST00000318006 CCDC183Q5T5S1 534 aa13.55□□□□□ -0.24
VPS39-201ENST00000318006 SKAP1Q86WV1 359 aa13.55□□□□□ -0.24
VPS39-201ENST00000318006 GBP3Q9H0R5 595 aa13.55□□□□□ -0.24
VPS39-201ENST00000318006 LRPPRCP42704 1394 aaKnown RBP13.55□□□□□ -0.24
VPS39-201ENST00000318006 ME1P48163 572 aa13.54□□□□□ -0.24
VPS39-201ENST00000318006 ZC3H6P61129 1189 aaKnown RBP13.54□□□□□ -0.24
VPS39-201ENST00000318006 TRIM34Q9BYJ4 488 aa13.54□□□□□ -0.24
VPS39-201ENST00000318006 FAM177BA6PVY3 158 aa13.54□□□□□ -0.24
VPS39-201ENST00000318006 ZSCAN31Q96LW9 406 aaPredicted RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 1219.3 ms