RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 PLIN1O60240 522 aa8.18□□□□□ -1.1
ZNF540-201ENST00000316433 SKOR2Q2VWA4 1001 aaPredicted RBP8.18□□□□□ -1.1
ZNF540-201ENST00000316433 PDCL2Q8N4E4 241 aa8.18□□□□□ -1.1
ZNF540-201ENST00000316433 PRIMPOLQ96LW4 560 aa8.18□□□□□ -1.1
ZNF540-201ENST00000316433 CARD14Q9BXL6 1004 aa8.18□□□□□ -1.1
ZNF540-201ENST00000316433 CD109Q6YHK3 1445 aa8.17□□□□□ -1.1
ZNF540-201ENST00000316433 RARSP54136 660 aaKnown RBP8.17□□□□□ -1.1
ZNF540-201ENST00000316433 FAM43BQ6ZT52 329 aaPredicted RBP8.17□□□□□ -1.1
ZNF540-201ENST00000316433 ARHGAP45Q92619 1136 aa8.17□□□□□ -1.1
ZNF540-201ENST00000316433 JARID2Q92833 1246 aaPredicted RBP8.17□□□□□ -1.1
ZNF540-201ENST00000316433 CALCOCO1Q9P1Z2 691 aa8.17□□□□□ -1.1
ZNF540-201ENST00000316433 MCCP23508 829 aa8.17□□□□□ -1.1
ZNF540-201ENST00000316433 HMGN5P82970 282 aaKnown RBP8.17□□□□□ -1.1
ZNF540-201ENST00000316433 TSC1Q92574 1164 aa8.17□□□□□ -1.1
ZNF540-201ENST00000316433 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.17□□□□□ -1.1
ZNF540-201ENST00000316433 RBM25P49756 843 aaKnown RBP8.16□□□□□ -1.1
ZNF540-201ENST00000316433 LMOD3Q0VAK6 560 aa8.16□□□□□ -1.1
ZNF540-201ENST00000316433 SMC5Q8IY18 1101 aa8.16□□□□□ -1.1
ZNF540-201ENST00000316433 FEZ1Q99689 392 aa8.16□□□□□ -1.1
ZNF540-201ENST00000316433 CCDC9Q9Y3X0 531 aaKnown RBP8.16□□□□□ -1.1
ZNF540-201ENST00000316433 SEC24BO95487 1268 aa8.16□□□□□ -1.1
ZNF540-201ENST00000316433 EGFL6Q8IUX8 553 aa8.16□□□□□ -1.1
ZNF540-201ENST00000316433 SPRYD3Q8NCJ5 442 aa8.16□□□□□ -1.1
ZNF540-201ENST00000316433 BANK1Q8NDB2 785 aa8.16□□□□□ -1.1
ZNF540-201ENST00000316433 PDLIM2Q96JY6 352 aa8.16□□□□□ -1.1
ZNF540-201ENST00000316433 PLEKHF1Q96S99 279 aa8.16□□□□□ -1.1
ZNF540-201ENST00000316433 SLFN14P0C7P3 912 aa8.16□□□□□ -1.1
ZNF540-201ENST00000316433 MLECQ14165 292 aa8.16□□□□□ -1.1
ZNF540-201ENST00000316433 U2AF2P26368 475 aaKnown RBP eCLIP8.15□□□□□ -1.1
ZNF540-201ENST00000316433 C20orf194Q5TEA3 1177 aa8.15□□□□□ -1.1
ZNF540-201ENST00000316433 EP400NLQ6ZTU2 488 aa8.15□□□□□ -1.1
ZNF540-201ENST00000316433 OGFRQ9NZT2 677 aa8.15□□□□□ -1.1
ZNF540-201ENST00000316433 CEP120Q8N960 986 aa8.15□□□□□ -1.11
ZNF540-201ENST00000316433 FEZ2Q9UHY8 353 aaPredicted RBP8.14□□□□□ -1.11
ZNF540-201ENST00000316433 FAM208AQ9UK61 1670 aaKnown RBP8.14□□□□□ -1.11
ZNF540-201ENST00000316433 EPB41L2O43491 1005 aaKnown RBP8.14□□□□□ -1.11
ZNF540-201ENST00000316433 MYCBPQ99417 103 aaPredicted RBP8.14□□□□□ -1.11
ZNF540-201ENST00000316433 BCL2L12Q9HB09 334 aa8.14□□□□□ -1.11
ZNF540-201ENST00000316433 ARHGEF10O15013 1369 aa8.14□□□□□ -1.11
ZNF540-201ENST00000316433 ADGRF5Q8IZF2 1346 aa8.14□□□□□ -1.11
ZNF540-201ENST00000316433 HSP90AB1P08238 724 aaKnown RBP8.14□□□□□ -1.11
ZNF540-201ENST00000316433 TNNT3P45378 269 aaPredicted RBP8.14□□□□□ -1.11
ZNF540-201ENST00000316433 UPF2Q9HAU5 1272 aaKnown RBP8.14□□□□□ -1.11
ZNF540-201ENST00000316433 KDM2AQ9Y2K7 1162 aa8.14□□□□□ -1.11
ZNF540-201ENST00000316433 PXDNLA1KZ92 1463 aa8.13□□□□□ -1.11
ZNF540-201ENST00000316433 RTL1A6NKG5 1358 aa8.13□□□□□ -1.11
ZNF540-201ENST00000316433 EVC2Q86UK5 1308 aa8.13□□□□□ -1.11
ZNF540-201ENST00000316433 MVPQ14764 893 aaKnown RBP8.13□□□□□ -1.11
ZNF540-201ENST00000316433 PLCD4Q9BRC7 762 aa8.13□□□□□ -1.11
ZNF540-201ENST00000316433 ZNF692Q9BU19 519 aaPredicted RBP8.13□□□□□ -1.11
ZNF540-201ENST00000316433 RWDD1Q9H446 243 aaPredicted RBP8.13□□□□□ -1.11
ZNF540-201ENST00000316433 CCDC39Q9UFE4 941 aa8.13□□□□□ -1.11
ZNF540-201ENST00000316433 CHD2O14647 1828 aaKnown RBP8.13□□□□□ -1.11
ZNF540-201ENST00000316433 DIP2BQ9P265 1576 aa8.13□□□□□ -1.11
ZNF540-201ENST00000316433 MAP2P11137 1827 aaKnown RBP8.13□□□□□ -1.11
ZNF540-201ENST00000316433 EDC4Q6P2E9 1401 aaKnown RBP8.12□□□□□ -1.11
ZNF540-201ENST00000316433 MFAP1P55081 439 aaKnown RBP8.12□□□□□ -1.11
ZNF540-201ENST00000316433 CFAP53Q96M91 514 aa8.12□□□□□ -1.11
ZNF540-201ENST00000316433 GBP4Q96PP9 640 aa8.12□□□□□ -1.11
ZNF540-201ENST00000316433 CAMTA1Q9Y6Y1 1673 aa8.12□□□□□ -1.11
ZNF540-201ENST00000316433 ABCC6O95255 1503 aa8.12□□□□□ -1.11
ZNF540-201ENST00000316433 GTF2A1P52655 376 aaPredicted RBP8.12□□□□□ -1.11
ZNF540-201ENST00000316433 KIAA2012Q0VF49 1180 aa8.12□□□□□ -1.11
ZNF540-201ENST00000316433 CT47A1Q5JQC4 288 aaPredicted RBP8.12□□□□□ -1.11
ZNF540-201ENST00000316433 NCAPGQ9BPX3 1015 aa8.12□□□□□ -1.11
ZNF540-201ENST00000316433 XRN1Q8IZH2 1706 aaKnown RBP8.12□□□□□ -1.11
ZNF540-201ENST00000316433 MARF1Q9Y4F3 1742 aaKnown RBP8.12□□□□□ -1.11
ZNF540-201ENST00000316433 CEP83Q9Y592 693 aa8.11□□□□□ -1.11
ZNF540-201ENST00000316433 RIMS2Q9UQ26 1411 aa8.11□□□□□ -1.11
ZNF540-201ENST00000316433 SOS1Q07889 1333 aaPredicted RBP8.11□□□□□ -1.11
ZNF540-201ENST00000316433 A2ML1A8K2U0 1454 aa8.11□□□□□ -1.11
ZNF540-201ENST00000316433 TERF2Q15554 542 aa8.11□□□□□ -1.11
ZNF540-201ENST00000316433 NBPF20Q3BBV1 942 aa8.11□□□□□ -1.11
ZNF540-201ENST00000316433 ANKRD7Q92527 254 aa8.11□□□□□ -1.11
ZNF540-201ENST00000316433 SMC4Q9NTJ3 1288 aa8.11□□□□□ -1.11
ZNF540-201ENST00000316433 UBR1Q8IWV7 1749 aa8.11□□□□□ -1.11
ZNF540-201ENST00000316433 PLEKHG2Q9H7P9 1386 aa8.11□□□□□ -1.11
ZNF540-201ENST00000316433 FAM177BA6PVY3 158 aa8.11□□□□□ -1.11
ZNF540-201ENST00000316433 SPINK5Q9NQ38 1064 aaPredicted RBP8.11□□□□□ -1.11
ZNF540-201ENST00000316433 DDX19BQ9UMR2 479 aa8.11□□□□□ -1.11
ZNF540-201ENST00000316433 MED1Q15648 1581 aaPredicted RBP8.1□□□□□ -1.11
ZNF540-201ENST00000316433 TRHP20396 242 aaPredicted RBP8.1□□□□□ -1.11
ZNF540-201ENST00000316433 NOP2P46087 812 aaKnown RBP8.1□□□□□ -1.11
ZNF540-201ENST00000316433 ADAMTS7Q9UKP4 1686 aa8.1□□□□□ -1.11
ZNF540-201ENST00000316433 IGHDP01880 384 aa8.1□□□□□ -1.11
ZNF540-201ENST00000316433 HSP90AB3PQ58FF7 597 aa8.1□□□□□ -1.11
ZNF540-201ENST00000316433 TNPO1Q92973 898 aaKnown RBP8.1□□□□□ -1.11
ZNF540-201ENST00000316433 A0A1W2PP64 1363 aa8.1□□□□□ -1.11
ZNF540-201ENST00000316433 CCDC172P0C7W6 258 aa8.09□□□□□ -1.11
ZNF540-201ENST00000316433 SATB1Q01826 763 aa8.09□□□□□ -1.11
ZNF540-201ENST00000316433 RSPH14Q9UHP6 348 aa8.09□□□□□ -1.11
ZNF540-201ENST00000316433 APAF1O14727 1248 aa8.09□□□□□ -1.11
ZNF540-201ENST00000316433 CLSTN1O94985 981 aa8.09□□□□□ -1.11
ZNF540-201ENST00000316433 BMP2KLQ5H9B9 411 aa8.09□□□□□ -1.11
ZNF540-201ENST00000316433 CTR9Q6PD62 1173 aa8.09□□□□□ -1.11
ZNF540-201ENST00000316433 TRERF1Q96PN7 1200 aa8.09□□□□□ -1.11
ZNF540-201ENST00000316433 KIAA0232Q92628 1395 aa8.09□□□□□ -1.11
ZNF540-201ENST00000316433 ABCC4O15439 1325 aa8.09□□□□□ -1.11
ZNF540-201ENST00000316433 ZNF445P59923 1031 aa8.09□□□□□ -1.12
ZNF540-201ENST00000316433 ERICH4A6NGS2 130 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms