RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 KRT24Q2M2I5 525 aa16.54■□□□□ 0.24
SKA3-202ENST00000314759 CEP85Q6P2H3 762 aa16.54■□□□□ 0.24
SKA3-202ENST00000314759 ANP32BQ92688 251 aaKnown RBP16.54■□□□□ 0.24
SKA3-202ENST00000314759 AATKQ6ZMQ8 1374 aa16.54■□□□□ 0.24
SKA3-202ENST00000314759 SMARCA5O60264 1052 aaPredicted RBP16.54■□□□□ 0.24
SKA3-202ENST00000314759 NCLP19338 710 aaKnown RBP16.54■□□□□ 0.24
SKA3-202ENST00000314759 ZSCAN23Q3MJ62 389 aa16.54■□□□□ 0.24
SKA3-202ENST00000314759 RPAP2Q8IXW5 612 aaPredicted RBP16.54■□□□□ 0.24
SKA3-202ENST00000314759 STAG3Q9UJ98 1225 aa16.54■□□□□ 0.24
SKA3-202ENST00000314759 EDC4Q6P2E9 1401 aaKnown RBP16.54■□□□□ 0.24
SKA3-202ENST00000314759 ZGPATQ8N5A5 531 aaKnown RBP16.53■□□□□ 0.24
SKA3-202ENST00000314759 RGS12O14924 1447 aa16.53■□□□□ 0.24
SKA3-202ENST00000314759 APBB1O00213 710 aa16.53■□□□□ 0.24
SKA3-202ENST00000314759 MSNP26038 577 aaKnown RBP16.53■□□□□ 0.24
SKA3-202ENST00000314759 CWC22Q9HCG8 908 aaKnown RBP16.52■□□□□ 0.24
SKA3-202ENST00000314759 R3HCC1Q9Y3T6 440 aaKnown RBP16.52■□□□□ 0.23
SKA3-202ENST00000314759 COG3Q96JB2 828 aa16.51■□□□□ 0.23
SKA3-202ENST00000314759 ZDHHC9Q9Y397 364 aa16.51■□□□□ 0.23
SKA3-202ENST00000314759 ST18O60284 1047 aa16.51■□□□□ 0.23
SKA3-202ENST00000314759 RTL1A6NKG5 1358 aa16.51■□□□□ 0.23
SKA3-202ENST00000314759 DLC1Q96QB1 1528 aa16.51■□□□□ 0.23
SKA3-202ENST00000314759 WASLO00401 505 aaPredicted RBP16.5■□□□□ 0.23
SKA3-202ENST00000314759 CASC1Q6TDU7 716 aa16.5■□□□□ 0.23
SKA3-202ENST00000314759 RBSNQ9H1K0 784 aa16.5■□□□□ 0.23
SKA3-202ENST00000314759 NCKAP5LQ9HCH0 1330 aa16.5■□□□□ 0.23
SKA3-202ENST00000314759 PRPF40AO75400 957 aaKnown RBP16.5■□□□□ 0.23
SKA3-202ENST00000314759 MEIS3Q99687 375 aa16.5■□□□□ 0.23
SKA3-202ENST00000314759 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.5■□□□□ 0.23
SKA3-202ENST00000314759 RICTORQ6R327 1708 aa16.5■□□□□ 0.23
SKA3-202ENST00000314759 MSH6P52701 1360 aa16.5■□□□□ 0.23
SKA3-202ENST00000314759 AEBP1Q8IUX7 1158 aa16.49■□□□□ 0.23
SKA3-202ENST00000314759 GPT2Q8TD30 523 aa16.49■□□□□ 0.23
SKA3-202ENST00000314759 FAM13BQ9NYF5 915 aa16.49■□□□□ 0.23
SKA3-202ENST00000314759 PRIM1P49642 420 aaKnown RBP16.49■□□□□ 0.23
SKA3-202ENST00000314759 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.49■□□□□ 0.23
SKA3-202ENST00000314759 CHL1O00533 1208 aa16.49■□□□□ 0.23
SKA3-202ENST00000314759 XPCQ01831 940 aaPredicted RBP16.49■□□□□ 0.23
SKA3-202ENST00000314759 REC8O95072 547 aa16.48■□□□□ 0.23
SKA3-202ENST00000314759 CHAMP1Q96JM3 812 aa16.48■□□□□ 0.23
SKA3-202ENST00000314759 CPS1P31327 1500 aa16.48■□□□□ 0.23
SKA3-202ENST00000314759 RBM27Q9P2N5 1060 aaKnown RBP16.48■□□□□ 0.23
SKA3-202ENST00000314759 NUDT16Q96DE0 195 aaKnown RBP16.47■□□□□ 0.23
SKA3-202ENST00000314759 MCM10Q7L590 875 aa16.47■□□□□ 0.23
SKA3-202ENST00000314759 ERC2O15083 957 aa16.46■□□□□ 0.23
SKA3-202ENST00000314759 SULT6B1Q6IMI4 303 aa16.46■□□□□ 0.23
SKA3-202ENST00000314759 PDLIM2Q96JY6 352 aa16.46■□□□□ 0.23
SKA3-202ENST00000314759 HAP1P54257 671 aaPredicted RBP16.46■□□□□ 0.23
SKA3-202ENST00000314759 PTPRCP08575 1304 aa16.46■□□□□ 0.23
SKA3-202ENST00000314759 HS1BP3Q53T59 392 aa16.46■□□□□ 0.22
SKA3-202ENST00000314759 NOL7Q9UMY1 257 aaKnown RBP16.46■□□□□ 0.22
SKA3-202ENST00000314759 EIF4A2Q14240 407 aaKnown RBP16.45■□□□□ 0.22
SKA3-202ENST00000314759 RIMBP3CA6NJZ7 1639 aa16.45■□□□□ 0.22
SKA3-202ENST00000314759 RIMBP3BA6NNM3 1639 aa16.45■□□□□ 0.22
SKA3-202ENST00000314759 RIMBP3Q9UFD9 1639 aa16.45■□□□□ 0.22
SKA3-202ENST00000314759 KIAA0232Q92628 1395 aa16.45■□□□□ 0.22
SKA3-202ENST00000314759 CCDC61Q9Y6R9 512 aa16.45■□□□□ 0.22
SKA3-202ENST00000314759 ARID3AQ99856 593 aa16.44■□□□□ 0.22
SKA3-202ENST00000314759 TMEM63CQ9P1W3 806 aa16.44■□□□□ 0.22
SKA3-202ENST00000314759 NSFL1CQ9UNZ2 370 aaKnown RBP16.44■□□□□ 0.22
SKA3-202ENST00000314759 A2ML1A8K2U0 1454 aa16.44■□□□□ 0.22
SKA3-202ENST00000314759 SLC4A2P04920 1241 aa16.44■□□□□ 0.22
SKA3-202ENST00000314759 TXNDC2Q86VQ3 553 aa16.44■□□□□ 0.22
SKA3-202ENST00000314759 TERF1P54274 439 aa16.43■□□□□ 0.22
SKA3-202ENST00000314759 PDE1AP54750 535 aa16.43■□□□□ 0.22
SKA3-202ENST00000314759 OSBPL3Q9H4L5 887 aa16.43■□□□□ 0.22
SKA3-202ENST00000314759 PRDM4Q9UKN5 801 aa16.43■□□□□ 0.22
SKA3-202ENST00000314759 SETD1AO15047 1707 aaKnown RBP16.43■□□□□ 0.22
SKA3-202ENST00000314759 UQCRHLA0A096LP55 91 aa16.42■□□□□ 0.22
SKA3-202ENST00000314759 ZNF500O60304 480 aaPredicted RBP16.42■□□□□ 0.22
SKA3-202ENST00000314759 UQCRHP07919 91 aa16.42■□□□□ 0.22
SKA3-202ENST00000314759 NEK4P51957 841 aa16.42■□□□□ 0.22
SKA3-202ENST00000314759 FOXD4L5Q5VV16 416 aaPredicted RBP16.42■□□□□ 0.22
SKA3-202ENST00000314759 FOXD4L4Q8WXT5 416 aaPredicted RBP16.42■□□□□ 0.22
SKA3-202ENST00000314759 TMX3Q96JJ7 454 aa16.42■□□□□ 0.22
SKA3-202ENST00000314759 HMMRO75330 724 aa16.42■□□□□ 0.22
SKA3-202ENST00000314759 LRSAM1Q6UWE0 723 aa16.42■□□□□ 0.22
SKA3-202ENST00000314759 METP08581 1390 aa16.41■□□□□ 0.22
SKA3-202ENST00000314759 SYCE3A1L190 88 aa16.41■□□□□ 0.22
SKA3-202ENST00000314759 F6X3S4 739 aa16.41■□□□□ 0.22
SKA3-202ENST00000314759 MIS18AQ9NYP9 233 aa16.41■□□□□ 0.22
SKA3-202ENST00000314759 TSHZ3Q63HK5 1081 aa16.4■□□□□ 0.22
SKA3-202ENST00000314759 SLC4A10Q6U841 1118 aa16.4■□□□□ 0.22
SKA3-202ENST00000314759 G2E3Q7L622 706 aa16.4■□□□□ 0.22
SKA3-202ENST00000314759 MON2Q7Z3U7 1717 aa16.4■□□□□ 0.22
SKA3-202ENST00000314759 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.39■□□□□ 0.21
SKA3-202ENST00000314759 EXOC6BQ9Y2D4 811 aa16.39■□□□□ 0.21
SKA3-202ENST00000314759 ZKSCAN5Q9Y2L8 839 aa16.39■□□□□ 0.21
SKA3-202ENST00000314759 CRB1P82279 1406 aa16.38■□□□□ 0.21
SKA3-202ENST00000314759 C3P01024 1663 aa16.38■□□□□ 0.21
SKA3-202ENST00000314759 BRD1O95696 1058 aa16.38■□□□□ 0.21
SKA3-202ENST00000314759 NRKQ7Z2Y5 1582 aa16.38■□□□□ 0.21
SKA3-202ENST00000314759 PRR36Q9H6K5 1346 aa16.38■□□□□ 0.21
SKA3-202ENST00000314759 HSP90AB2PQ58FF8 381 aa16.38■□□□□ 0.21
SKA3-202ENST00000314759 ESYT1Q9BSJ8 1104 aa16.38■□□□□ 0.21
SKA3-202ENST00000314759 PALD1Q9ULE6 856 aa16.38■□□□□ 0.21
SKA3-202ENST00000314759 SALL3Q9BXA9 1300 aa16.37■□□□□ 0.21
SKA3-202ENST00000314759 CUL4AQ13619 759 aa16.37■□□□□ 0.21
SKA3-202ENST00000314759 MCM2P49736 904 aa16.36■□□□□ 0.21
SKA3-202ENST00000314759 CCT4P50991 539 aaKnown RBP16.36■□□□□ 0.21
SKA3-202ENST00000314759 ZBTB7CA1YPR0 619 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms