RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 CDK11BP21127 795 aaKnown RBP13.51□□□□□ -0.25
LSM3-201ENST00000306024 IL13P35225 146 aa13.51□□□□□ -0.25
LSM3-201ENST00000306024 THUMPD2Q9BTF0 503 aaKnown RBP13.51□□□□□ -0.25
LSM3-201ENST00000306024 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.51□□□□□ -0.25
LSM3-201ENST00000306024 IP6K1Q92551 441 aa13.51□□□□□ -0.25
LSM3-201ENST00000306024 CD163L1Q9NR16 1453 aa13.51□□□□□ -0.25
LSM3-201ENST00000306024 SBNO1A3KN83 1393 aa13.51□□□□□ -0.25
LSM3-201ENST00000306024 AATKQ6ZMQ8 1374 aa13.5□□□□□ -0.25
LSM3-201ENST00000306024 TEFQ10587 303 aa13.5□□□□□ -0.25
LSM3-201ENST00000306024 EYA1Q99502 592 aa13.5□□□□□ -0.25
LSM3-201ENST00000306024 BCL2L13Q9BXK5 485 aa13.5□□□□□ -0.25
LSM3-201ENST00000306024 PLEKHO1Q53GL0 409 aaPredicted RBP13.5□□□□□ -0.25
LSM3-201ENST00000306024 DCTN1Q14203 1278 aa13.49□□□□□ -0.25
LSM3-201ENST00000306024 ZNF530Q6P9A1 599 aaPredicted RBP13.49□□□□□ -0.25
LSM3-201ENST00000306024 TATP17735 454 aaPredicted RBP13.49□□□□□ -0.25
LSM3-201ENST00000306024 TSR2Q969E8 191 aaKnown RBP13.49□□□□□ -0.25
LSM3-201ENST00000306024 FOXD4L1Q9NU39 408 aa13.49□□□□□ -0.25
LSM3-201ENST00000306024 ARHGEF10O15013 1369 aa13.49□□□□□ -0.25
LSM3-201ENST00000306024 MEX3CQ5U5Q3 659 aaKnown RBP13.49□□□□□ -0.25
LSM3-201ENST00000306024 FTSJ3Q8IY81 847 aaKnown RBP13.49□□□□□ -0.25
LSM3-201ENST00000306024 PHACTR3Q96KR7 559 aa13.49□□□□□ -0.25
LSM3-201ENST00000306024 KNDC1Q76NI1 1749 aa13.48□□□□□ -0.25
LSM3-201ENST00000306024 GNAI1P63096 354 aa13.48□□□□□ -0.25
LSM3-201ENST00000306024 TBC1D2Q9BYX2 928 aa13.48□□□□□ -0.25
LSM3-201ENST00000306024 MYOM1P52179 1685 aa13.48□□□□□ -0.25
LSM3-201ENST00000306024 NASPP49321 788 aaPredicted RBP13.48□□□□□ -0.25
LSM3-201ENST00000306024 WDR63Q8IWG1 891 aa13.48□□□□□ -0.25
LSM3-201ENST00000306024 SMC4Q9NTJ3 1288 aa13.48□□□□□ -0.25
LSM3-201ENST00000306024 COG6Q9Y2V7 657 aa13.48□□□□□ -0.25
LSM3-201ENST00000306024 ISY1Q9ULR0 285 aaKnown RBP13.47□□□□□ -0.25
LSM3-201ENST00000306024 MCM10Q7L590 875 aa13.47□□□□□ -0.25
LSM3-201ENST00000306024 SETD1AO15047 1707 aaKnown RBP13.46□□□□□ -0.25
LSM3-201ENST00000306024 SLFN5Q08AF3 891 aa13.46□□□□□ -0.25
LSM3-201ENST00000306024 NCOA3Q9Y6Q9 1424 aa13.46□□□□□ -0.25
LSM3-201ENST00000306024 ZSCAN30Q86W11 494 aa13.46□□□□□ -0.25
LSM3-201ENST00000306024 TSPYL4Q9UJ04 414 aa13.46□□□□□ -0.26
LSM3-201ENST00000306024 SPATA31A3Q5VYP0 1347 aa13.46□□□□□ -0.26
LSM3-201ENST00000306024 UQCRHLA0A096LP55 91 aa13.45□□□□□ -0.26
LSM3-201ENST00000306024 UQCRHP07919 91 aa13.45□□□□□ -0.26
LSM3-201ENST00000306024 SKOR2Q2VWA4 1001 aaPredicted RBP13.45□□□□□ -0.26
LSM3-201ENST00000306024 ARHGEF25Q86VW2 580 aa13.45□□□□□ -0.26
LSM3-201ENST00000306024 DDX49Q9Y6V7 483 aaKnown RBP13.45□□□□□ -0.26
LSM3-201ENST00000306024 FAM83GA6ND36 823 aa13.45□□□□□ -0.26
LSM3-201ENST00000306024 EXOSC9Q06265 439 aaKnown RBP13.45□□□□□ -0.26
LSM3-201ENST00000306024 CCDC173Q0VFZ6 552 aa13.45□□□□□ -0.26
LSM3-201ENST00000306024 AAMPQ13685 434 aa13.45□□□□□ -0.26
LSM3-201ENST00000306024 MTERF4Q7Z6M4 381 aaKnown RBP13.45□□□□□ -0.26
LSM3-201ENST00000306024 MST1RQ04912 1400 aa13.45□□□□□ -0.26
LSM3-201ENST00000306024 XRN1Q8IZH2 1706 aaKnown RBP13.45□□□□□ -0.26
LSM3-201ENST00000306024 SEC24BO95487 1268 aa13.45□□□□□ -0.26
LSM3-201ENST00000306024 CHD2O14647 1828 aaKnown RBP13.44□□□□□ -0.26
LSM3-201ENST00000306024 PTMSP20962 102 aa13.44□□□□□ -0.26
LSM3-201ENST00000306024 CLUAP1Q96AJ1 413 aa13.44□□□□□ -0.26
LSM3-201ENST00000306024 USP31Q70CQ4 1352 aa13.44□□□□□ -0.26
LSM3-201ENST00000306024 KDM2BQ8NHM5 1336 aa13.44□□□□□ -0.26
LSM3-201ENST00000306024 DCCP43146 1447 aa13.44□□□□□ -0.26
LSM3-201ENST00000306024 ITSN1Q15811 1721 aa13.43□□□□□ -0.26
LSM3-201ENST00000306024 GNAT3A8MTJ3 354 aa13.43□□□□□ -0.26
LSM3-201ENST00000306024 C22orf23Q9BZE7 217 aa13.43□□□□□ -0.26
LSM3-201ENST00000306024 NBPF6Q5VWK0 638 aa13.43□□□□□ -0.26
LSM3-201ENST00000306024 DDX54Q8TDD1 881 aaKnown RBP13.43□□□□□ -0.26
LSM3-201ENST00000306024 NBPF4Q96M43 638 aa13.43□□□□□ -0.26
LSM3-201ENST00000306024 INSRP06213 1382 aa13.43□□□□□ -0.26
LSM3-201ENST00000306024 SPG7Q9UQ90 795 aa13.43□□□□□ -0.26
LSM3-201ENST00000306024 ADGRB2O60241 1585 aa13.42□□□□□ -0.26
LSM3-201ENST00000306024 OVOS2A0A0J9YW53 1432 aa13.42□□□□□ -0.26
LSM3-201ENST00000306024 BLMP54132 1417 aaPredicted RBP13.42□□□□□ -0.26
LSM3-201ENST00000306024 OVOS2Q6IE36 1432 aa13.42□□□□□ -0.26
LSM3-201ENST00000306024 LRRC7Q96NW7 1537 aa13.42□□□□□ -0.26
LSM3-201ENST00000306024 NGLY1Q96IV0 654 aa13.42□□□□□ -0.26
LSM3-201ENST00000306024 KIAA0232Q92628 1395 aa13.42□□□□□ -0.26
LSM3-201ENST00000306024 MTHFSDQ2M296 383 aaKnown RBP13.42□□□□□ -0.26
LSM3-201ENST00000306024 DUSP27Q5VZP5 1158 aa13.42□□□□□ -0.26
LSM3-201ENST00000306024 BBXQ8WY36 941 aaPredicted RBP13.42□□□□□ -0.26
LSM3-201ENST00000306024 FSD2A1L4K1 749 aa13.41□□□□□ -0.26
LSM3-201ENST00000306024 RWDD1Q9H446 243 aaPredicted RBP13.41□□□□□ -0.26
LSM3-201ENST00000306024 MIS18AQ9NYP9 233 aa13.41□□□□□ -0.26
LSM3-201ENST00000306024 IPO8O15397 1037 aaKnown RBP13.41□□□□□ -0.26
LSM3-201ENST00000306024 STK31Q9BXU1 1019 aa13.41□□□□□ -0.26
LSM3-201ENST00000306024 CDK12Q9NYV4 1490 aaPredicted RBP13.41□□□□□ -0.26
LSM3-201ENST00000306024 BCAR3O75815 825 aa13.41□□□□□ -0.26
LSM3-201ENST00000306024 AMOTQ4VCS5 1084 aa13.41□□□□□ -0.26
LSM3-201ENST00000306024 PANK1Q8TE04 598 aa13.41□□□□□ -0.26
LSM3-201ENST00000306024 NECTIN2Q92692 538 aa13.41□□□□□ -0.26
LSM3-201ENST00000306024 FGD1P98174 961 aa13.4□□□□□ -0.26
LSM3-201ENST00000306024 BTG4Q9NY30 223 aa13.4□□□□□ -0.26
LSM3-201ENST00000306024 TNS3Q68CZ2 1445 aa13.4□□□□□ -0.26
LSM3-201ENST00000306024 MPRIPQ6WCQ1 1025 aa13.4□□□□□ -0.26
LSM3-201ENST00000306024 SYTL4Q96C24 671 aaPredicted RBP13.4□□□□□ -0.26
LSM3-201ENST00000306024 SPINK5Q9NQ38 1064 aaPredicted RBP13.39□□□□□ -0.27
LSM3-201ENST00000306024 CCDC27Q2M243 656 aa13.39□□□□□ -0.27
LSM3-201ENST00000306024 EIF2S2P20042 333 aaKnown RBP13.39□□□□□ -0.27
LSM3-201ENST00000306024 CSPP1Q1MSJ5 1256 aa13.39□□□□□ -0.27
LSM3-201ENST00000306024 PNPLA6Q8IY17 1366 aa13.38□□□□□ -0.27
LSM3-201ENST00000306024 ERBB4Q15303 1308 aa13.38□□□□□ -0.27
LSM3-201ENST00000306024 KAT6BQ8WYB5 2073 aa13.38□□□□□ -0.27
LSM3-201ENST00000306024 IGHDP01880 384 aa13.38□□□□□ -0.27
LSM3-201ENST00000306024 TTC5Q8N0Z6 440 aa13.38□□□□□ -0.27
LSM3-201ENST00000306024 PLEKHF1Q96S99 279 aa13.38□□□□□ -0.27
LSM3-201ENST00000306024 OFD1O75665 1012 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms