RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 ALDH1L2Q3SY69 923 aa18.31■□□□□ 0.52
C9orf3-202ENST00000297979 ZKSCAN2Q63HK3 967 aa18.31■□□□□ 0.52
C9orf3-202ENST00000297979 BRINP3Q76B58 766 aa18.31■□□□□ 0.52
C9orf3-202ENST00000297979 RTF1Q92541 710 aaKnown RBP18.31■□□□□ 0.52
C9orf3-202ENST00000297979 RGPD2P0DJD1 1756 aa18.3■□□□□ 0.52
C9orf3-202ENST00000297979 NBPF6Q5VWK0 638 aa18.3■□□□□ 0.52
C9orf3-202ENST00000297979 USHBP1Q8N6Y0 703 aa18.3■□□□□ 0.52
C9orf3-202ENST00000297979 NBPF4Q96M43 638 aa18.3■□□□□ 0.52
C9orf3-202ENST00000297979 COG6Q9Y2V7 657 aa18.3■□□□□ 0.52
C9orf3-202ENST00000297979 CRB1P82279 1406 aa18.29■□□□□ 0.52
C9orf3-202ENST00000297979 KIF16BQ96L93 1317 aa18.29■□□□□ 0.52
C9orf3-202ENST00000297979 SPATA31A3Q5VYP0 1347 aa18.28■□□□□ 0.52
C9orf3-202ENST00000297979 HTATSF1O43719 755 aaKnown RBP18.28■□□□□ 0.52
C9orf3-202ENST00000297979 MS4A1P11836 297 aa18.28■□□□□ 0.52
C9orf3-202ENST00000297979 LRRC37A3O60309 1634 aa18.28■□□□□ 0.52
C9orf3-202ENST00000297979 VAMP4O75379 141 aa18.28■□□□□ 0.52
C9orf3-202ENST00000297979 RLBP1P12271 317 aa18.28■□□□□ 0.52
C9orf3-202ENST00000297979 SLAIN2Q9P270 581 aa18.28■□□□□ 0.52
C9orf3-202ENST00000297979 TNNQ9UQP3 1299 aa18.28■□□□□ 0.52
C9orf3-202ENST00000297979 CAMTA1Q9Y6Y1 1673 aa18.28■□□□□ 0.52
C9orf3-202ENST00000297979 CHL1O00533 1208 aa18.27■□□□□ 0.52
C9orf3-202ENST00000297979 TSPYL6Q8N831 410 aa18.27■□□□□ 0.52
C9orf3-202ENST00000297979 CRYBG1Q9Y4K1 1723 aa18.27■□□□□ 0.52
C9orf3-202ENST00000297979 TWISTNBQ3B726 338 aaPredicted RBP18.27■□□□□ 0.52
C9orf3-202ENST00000297979 NCAPD2Q15021 1401 aa18.27■□□□□ 0.52
C9orf3-202ENST00000297979 ANKRD24Q8TF21 1146 aa18.27■□□□□ 0.51
C9orf3-202ENST00000297979 MAP3K5Q99683 1374 aa18.26■□□□□ 0.51
C9orf3-202ENST00000297979 GNAT3A8MTJ3 354 aa18.26■□□□□ 0.51
C9orf3-202ENST00000297979 BRPF1P55201 1214 aaPredicted RBP18.26■□□□□ 0.51
C9orf3-202ENST00000297979 FTSJ3Q8IY81 847 aaKnown RBP18.26■□□□□ 0.51
C9orf3-202ENST00000297979 LRRC59Q96AG4 307 aaKnown RBP18.26■□□□□ 0.51
C9orf3-202ENST00000297979 CLUAP1Q96AJ1 413 aa18.26■□□□□ 0.51
C9orf3-202ENST00000297979 RGPD5Q99666 1765 aa18.26■□□□□ 0.51
C9orf3-202ENST00000297979 ZC3H6P61129 1189 aaKnown RBP18.26■□□□□ 0.51
C9orf3-202ENST00000297979 AAMPQ13685 434 aa18.26■□□□□ 0.51
C9orf3-202ENST00000297979 DZIP1LQ8IYY4 767 aaKnown RBP18.26■□□□□ 0.51
C9orf3-202ENST00000297979 KDM2BQ8NHM5 1336 aa18.25■□□□□ 0.51
C9orf3-202ENST00000297979 ATF7IPQ6VMQ6 1270 aa18.25■□□□□ 0.51
C9orf3-202ENST00000297979 C8orf58Q8NAV2 365 aa18.25■□□□□ 0.51
C9orf3-202ENST00000297979 NOB1Q9ULX3 412 aaKnown RBP18.25■□□□□ 0.51
C9orf3-202ENST00000297979 IPO8O15397 1037 aaKnown RBP18.25■□□□□ 0.51
C9orf3-202ENST00000297979 TRIM27P14373 513 aa18.25■□□□□ 0.51
C9orf3-202ENST00000297979 AXIN2Q9Y2T1 843 aa18.25■□□□□ 0.51
C9orf3-202ENST00000297979 ABCC6O95255 1503 aa18.24■□□□□ 0.51
C9orf3-202ENST00000297979 ELL2O00472 640 aaPredicted RBP18.24■□□□□ 0.51
C9orf3-202ENST00000297979 CENPQQ7L2Z9 268 aaPredicted RBP18.24■□□□□ 0.51
C9orf3-202ENST00000297979 KIAA0232Q92628 1395 aa18.23■□□□□ 0.51
C9orf3-202ENST00000297979 MVPQ14764 893 aaKnown RBP18.23■□□□□ 0.51
C9orf3-202ENST00000297979 COL18A1P39060 1754 aa18.23■□□□□ 0.51
C9orf3-202ENST00000297979 ERBB3P21860 1342 aa18.22■□□□□ 0.51
C9orf3-202ENST00000297979 SOS2Q07890 1332 aaPredicted RBP18.22■□□□□ 0.51
C9orf3-202ENST00000297979 HAP1P54257 671 aaPredicted RBP18.22■□□□□ 0.51
C9orf3-202ENST00000297979 MRPL50Q8N5N7 158 aaKnown RBP18.22■□□□□ 0.51
C9orf3-202ENST00000297979 CABLES1Q8TDN4 633 aa18.22■□□□□ 0.51
C9orf3-202ENST00000297979 LMO7Q8WWI1 1683 aa18.22■□□□□ 0.51
C9orf3-202ENST00000297979 TSPYL4Q9UJ04 414 aa18.21■□□□□ 0.51
C9orf3-202ENST00000297979 NHSL1Q5SYE7 1610 aa18.2■□□□□ 0.5
C9orf3-202ENST00000297979 CPDO75976 1380 aa18.2■□□□□ 0.5
C9orf3-202ENST00000297979 PLEKHO1Q53GL0 409 aaPredicted RBP18.19■□□□□ 0.5
C9orf3-202ENST00000297979 IL17REQ8NFR9 667 aa18.19■□□□□ 0.5
C9orf3-202ENST00000297979 ARHGAP45Q92619 1136 aa18.19■□□□□ 0.5
C9orf3-202ENST00000297979 FAM208AQ9UK61 1670 aaKnown RBP18.19■□□□□ 0.5
C9orf3-202ENST00000297979 AMOTQ4VCS5 1084 aa18.18■□□□□ 0.5
C9orf3-202ENST00000297979 KRT24Q2M2I5 525 aa18.18■□□□□ 0.5
C9orf3-202ENST00000297979 MIS18AQ9NYP9 233 aa18.18■□□□□ 0.5
C9orf3-202ENST00000297979 ITPRIPQ8IWB1 547 aa18.17■□□□□ 0.5
C9orf3-202ENST00000297979 DDX19BQ9UMR2 479 aa18.17■□□□□ 0.5
C9orf3-202ENST00000297979 CEMIPQ8WUJ3 1361 aa18.17■□□□□ 0.5
C9orf3-202ENST00000297979 BABAM1Q9NWV8 329 aa18.17■□□□□ 0.5
C9orf3-202ENST00000297979 TCERG1O14776 1098 aaKnown RBP18.16■□□□□ 0.5
C9orf3-202ENST00000297979 ZNF530Q6P9A1 599 aaPredicted RBP18.16■□□□□ 0.5
C9orf3-202ENST00000297979 TMEM57Q8N5G2 664 aa18.16■□□□□ 0.5
C9orf3-202ENST00000297979 AKAP4Q5JQC9 854 aa18.16■□□□□ 0.5
C9orf3-202ENST00000297979 ABCA3Q99758 1704 aa18.15■□□□□ 0.5
C9orf3-202ENST00000297979 TAF7Q15545 349 aaPredicted RBP18.15■□□□□ 0.5
C9orf3-202ENST00000297979 CHRNA2Q15822 529 aa18.15■□□□□ 0.5
C9orf3-202ENST00000297979 RBM19Q9Y4C8 960 aaKnown RBP18.15■□□□□ 0.5
C9orf3-202ENST00000297979 NLRP2Q9NX02 1062 aa18.14■□□□□ 0.49
C9orf3-202ENST00000297979 IGHDP01880 384 aa18.13■□□□□ 0.49
C9orf3-202ENST00000297979 C1orf141Q5JVX7 400 aa18.13■□□□□ 0.49
C9orf3-202ENST00000297979 PCDHB15Q9Y5E8 787 aa18.13■□□□□ 0.49
C9orf3-202ENST00000297979 CSB-PGBD3P0DP91 1061 aa18.13■□□□□ 0.49
C9orf3-202ENST00000297979 API5Q9BZZ5 524 aaKnown RBP18.13■□□□□ 0.49
C9orf3-202ENST00000297979 OVOS2A0A0G2JMS6 1433 aa18.12■□□□□ 0.49
C9orf3-202ENST00000297979 ABCC4O15439 1325 aa18.12■□□□□ 0.49
C9orf3-202ENST00000297979 BCL11BQ9C0K0 894 aaPredicted RBP18.12■□□□□ 0.49
C9orf3-202ENST00000297979 VIRMAQ69YN4 1812 aaKnown RBP18.12■□□□□ 0.49
C9orf3-202ENST00000297979 RAPGEF4Q8WZA2 1011 aa18.11■□□□□ 0.49
C9orf3-202ENST00000297979 LGR6Q9HBX8 967 aa18.11■□□□□ 0.49
C9orf3-202ENST00000297979 SOS1Q07889 1333 aaPredicted RBP18.11■□□□□ 0.49
C9orf3-202ENST00000297979 PRDM11Q9NQV5 511 aa18.1■□□□□ 0.49
C9orf3-202ENST00000297979 PLEKHG2Q9H7P9 1386 aa18.1■□□□□ 0.49
C9orf3-202ENST00000297979 LTBP4Q8N2S1 1624 aa18.1■□□□□ 0.49
C9orf3-202ENST00000297979 KDM3BQ7LBC6 1761 aa18.1■□□□□ 0.49
C9orf3-202ENST00000297979 SKAP1Q86WV1 359 aa18.09■□□□□ 0.49
C9orf3-202ENST00000297979 ZBTB40Q9NUA8 1239 aa18.09■□□□□ 0.49
C9orf3-202ENST00000297979 MEGF6O75095 1541 aa18.09■□□□□ 0.49
C9orf3-202ENST00000297979 TATP17735 454 aaPredicted RBP18.08■□□□□ 0.49
C9orf3-202ENST00000297979 MPRIPQ6WCQ1 1025 aa18.08■□□□□ 0.49
C9orf3-202ENST00000297979 CHMP4BQ9H444 224 aaKnown RBP18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms