RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 TBC1D9Q6ZT07 1266 aa12.85□□□□□ -0.35
SKA1-201ENST00000285116 GAS2L3Q86XJ1 694 aa12.85□□□□□ -0.35
SKA1-201ENST00000285116 KIF13AQ9H1H9 1805 aa12.85□□□□□ -0.35
SKA1-201ENST00000285116 ATP10DQ9P241 1426 aa12.85□□□□□ -0.35
SKA1-201ENST00000285116 K7ELQ4 463 aaPredicted RBP12.85□□□□□ -0.35
SKA1-201ENST00000285116 WASLO00401 505 aaPredicted RBP12.85□□□□□ -0.35
SKA1-201ENST00000285116 TXNDC2Q86VQ3 553 aa12.85□□□□□ -0.35
SKA1-201ENST00000285116 PPP1R9BQ96SB3 815 aa12.85□□□□□ -0.35
SKA1-201ENST00000285116 FMN2Q9NZ56 1722 aa12.85□□□□□ -0.35
SKA1-201ENST00000285116 TWISTNBQ3B726 338 aaPredicted RBP12.84□□□□□ -0.35
SKA1-201ENST00000285116 DCTPP1Q9H773 170 aa12.84□□□□□ -0.35
SKA1-201ENST00000285116 ANKRD45Q5TZF3 282 aa12.84□□□□□ -0.35
SKA1-201ENST00000285116 KIAA1211Q6ZU35 1233 aa12.84□□□□□ -0.35
SKA1-201ENST00000285116 HSP90AB1P08238 724 aaKnown RBP12.83□□□□□ -0.36
SKA1-201ENST00000285116 TERF1P54274 439 aa12.83□□□□□ -0.36
SKA1-201ENST00000285116 TSPYL6Q8N831 410 aa12.83□□□□□ -0.36
SKA1-201ENST00000285116 ZSCAN30Q86W11 494 aa12.83□□□□□ -0.36
SKA1-201ENST00000285116 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.83□□□□□ -0.36
SKA1-201ENST00000285116 RIMS1Q86UR5 1692 aaKnown RBP12.82□□□□□ -0.36
SKA1-201ENST00000285116 OFD1O75665 1012 aa12.82□□□□□ -0.36
SKA1-201ENST00000285116 LTKP29376 864 aa12.82□□□□□ -0.36
SKA1-201ENST00000285116 ANP32BQ92688 251 aaKnown RBP12.82□□□□□ -0.36
SKA1-201ENST00000285116 OVOS2A0A0J9YW53 1432 aa12.82□□□□□ -0.36
SKA1-201ENST00000285116 OVOS2Q6IE36 1432 aa12.82□□□□□ -0.36
SKA1-201ENST00000285116 RABEP1Q15276 862 aa12.82□□□□□ -0.36
SKA1-201ENST00000285116 LRRC37A3O60309 1634 aa12.82□□□□□ -0.36
SKA1-201ENST00000285116 PEAK1Q9H792 1746 aa12.81□□□□□ -0.36
SKA1-201ENST00000285116 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.81□□□□□ -0.36
SKA1-201ENST00000285116 PLEKHM2Q8IWE5 1019 aa12.81□□□□□ -0.36
SKA1-201ENST00000285116 EMILIN1Q9Y6C2 1016 aa12.81□□□□□ -0.36
SKA1-201ENST00000285116 PTPRCP08575 1304 aa12.81□□□□□ -0.36
SKA1-201ENST00000285116 UBR1Q8IWV7 1749 aa12.81□□□□□ -0.36
SKA1-201ENST00000285116 RPAP2Q8IXW5 612 aaPredicted RBP12.81□□□□□ -0.36
SKA1-201ENST00000285116 ANKRD44Q8N8A2 993 aa12.81□□□□□ -0.36
SKA1-201ENST00000285116 NASPP49321 788 aaPredicted RBP12.8□□□□□ -0.36
SKA1-201ENST00000285116 TTC22Q5TAA0 569 aa12.8□□□□□ -0.36
SKA1-201ENST00000285116 C8orf58Q8NAV2 365 aa12.8□□□□□ -0.36
SKA1-201ENST00000285116 CACNA1FO60840 1977 aa12.8□□□□□ -0.36
SKA1-201ENST00000285116 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.8□□□□□ -0.36
SKA1-201ENST00000285116 COG3Q96JB2 828 aa12.8□□□□□ -0.36
SKA1-201ENST00000285116 USP54Q70EL1 1684 aa12.8□□□□□ -0.36
SKA1-201ENST00000285116 GSPT1P15170 499 aaKnown RBP12.79□□□□□ -0.36
SKA1-201ENST00000285116 MSNP26038 577 aaKnown RBP12.79□□□□□ -0.36
SKA1-201ENST00000285116 MAP7D2Q96T17 732 aa12.79□□□□□ -0.36
SKA1-201ENST00000285116 GOLGA6L22H0YM25 854 aa12.79□□□□□ -0.36
SKA1-201ENST00000285116 HMOX1P09601 288 aa12.79□□□□□ -0.36
SKA1-201ENST00000285116 CCDC61Q9Y6R9 512 aa12.79□□□□□ -0.36
SKA1-201ENST00000285116 METP08581 1390 aa12.79□□□□□ -0.36
SKA1-201ENST00000285116 USP31Q70CQ4 1352 aa12.79□□□□□ -0.36
SKA1-201ENST00000285116 GOLGB1Q14789 3259 aaKnown RBP12.79□□□□□ -0.36
SKA1-201ENST00000285116 CHL1O00533 1208 aa12.78□□□□□ -0.36
SKA1-201ENST00000285116 NME9Q86XW9 330 aa12.78□□□□□ -0.36
SKA1-201ENST00000285116 ARHGEF10O15013 1369 aa12.78□□□□□ -0.36
SKA1-201ENST00000285116 CD2BP2O95400 341 aaKnown RBP12.78□□□□□ -0.36
SKA1-201ENST00000285116 CYP2E1P05181 493 aaPredicted RBP12.78□□□□□ -0.36
SKA1-201ENST00000285116 THUMPD2Q9BTF0 503 aaKnown RBP12.78□□□□□ -0.36
SKA1-201ENST00000285116 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.78□□□□□ -0.36
SKA1-201ENST00000285116 RTL1A6NKG5 1358 aa12.78□□□□□ -0.36
SKA1-201ENST00000285116 TULP1O00294 542 aaPredicted RBP12.78□□□□□ -0.36
SKA1-201ENST00000285116 NUDT16Q96DE0 195 aaKnown RBP12.78□□□□□ -0.36
SKA1-201ENST00000285116 FAM208AQ9UK61 1670 aaKnown RBP12.77□□□□□ -0.36
SKA1-201ENST00000285116 CRB1P82279 1406 aa12.77□□□□□ -0.36
SKA1-201ENST00000285116 KLHL40Q2TBA0 621 aa12.77□□□□□ -0.36
SKA1-201ENST00000285116 HS1BP3Q53T59 392 aa12.77□□□□□ -0.36
SKA1-201ENST00000285116 USP26Q9BXU7 913 aa12.77□□□□□ -0.37
SKA1-201ENST00000285116 C1orf115Q9H7X2 142 aa12.77□□□□□ -0.37
SKA1-201ENST00000285116 NUCB2P80303 420 aa12.76□□□□□ -0.37
SKA1-201ENST00000285116 CWC22Q9HCG8 908 aaKnown RBP12.76□□□□□ -0.37
SKA1-201ENST00000285116 SSH2Q76I76 1423 aa12.76□□□□□ -0.37
SKA1-201ENST00000285116 GAS2L2Q8NHY3 880 aa12.76□□□□□ -0.37
SKA1-201ENST00000285116 OSBPL3Q9H4L5 887 aa12.76□□□□□ -0.37
SKA1-201ENST00000285116 XRN1Q8IZH2 1706 aaKnown RBP12.76□□□□□ -0.37
SKA1-201ENST00000285116 TTC21BQ7Z4L5 1316 aa12.76□□□□□ -0.37
SKA1-201ENST00000285116 CEP85Q6P2H3 762 aa12.75□□□□□ -0.37
SKA1-201ENST00000285116 IL17RAQ96F46 866 aa12.75□□□□□ -0.37
SKA1-201ENST00000285116 HDGFP51858 240 aaKnown RBP12.74□□□□□ -0.37
SKA1-201ENST00000285116 ZNF445P59923 1031 aa12.74□□□□□ -0.37
SKA1-201ENST00000285116 NUTM2GQ5VZR2 741 aa12.74□□□□□ -0.37
SKA1-201ENST00000285116 PLEKHG3A1L390 1219 aa12.74□□□□□ -0.37
SKA1-201ENST00000285116 BAG4O95429 457 aaKnown RBP12.74□□□□□ -0.37
SKA1-201ENST00000285116 XPCQ01831 940 aaPredicted RBP12.74□□□□□ -0.37
SKA1-201ENST00000285116 DDX49Q9Y6V7 483 aaKnown RBP12.74□□□□□ -0.37
SKA1-201ENST00000285116 USP6P35125 1406 aa12.73□□□□□ -0.37
SKA1-201ENST00000285116 TPRNQ4KMQ1 711 aa12.73□□□□□ -0.37
SKA1-201ENST00000285116 CASC1Q6TDU7 716 aa12.73□□□□□ -0.37
SKA1-201ENST00000285116 MSH6P52701 1360 aa12.73□□□□□ -0.37
SKA1-201ENST00000285116 SOS1Q07889 1333 aaPredicted RBP12.73□□□□□ -0.37
SKA1-201ENST00000285116 EIF4A2Q14240 407 aaKnown RBP12.73□□□□□ -0.37
SKA1-201ENST00000285116 KDRP35968 1356 aa12.73□□□□□ -0.37
SKA1-201ENST00000285116 PXDNLA1KZ92 1463 aa12.73□□□□□ -0.37
SKA1-201ENST00000285116 PRR36Q9H6K5 1346 aa12.73□□□□□ -0.37
SKA1-201ENST00000285116 ZNF500O60304 480 aaPredicted RBP12.72□□□□□ -0.37
SKA1-201ENST00000285116 C14orf37Q86TY3 774 aa12.72□□□□□ -0.37
SKA1-201ENST00000285116 ADAMTS13Q76LX8 1427 aa12.72□□□□□ -0.37
SKA1-201ENST00000285116 SSFA2P28290 1259 aa12.72□□□□□ -0.37
SKA1-201ENST00000285116 NOL7Q9UMY1 257 aaKnown RBP12.72□□□□□ -0.37
SKA1-201ENST00000285116 MTERF4Q7Z6M4 381 aaKnown RBP12.72□□□□□ -0.37
SKA1-201ENST00000285116 RBM42Q9BTD8 480 aaKnown RBP12.72□□□□□ -0.37
SKA1-201ENST00000285116 ZRANB1Q9UGI0 708 aa12.72□□□□□ -0.37
SKA1-201ENST00000285116 FAM83GA6ND36 823 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms