RNA–Protein interactions for RNA: ENST00000284767.9

PDLIM3-201, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 2,589 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-201ENST00000284767 SEC24BO95487 1268 aa23.12■■□□□ 1.29
PDLIM3-201ENST00000284767 PRKCSHP14314 528 aaPredicted RBP23.12■■□□□ 1.29
PDLIM3-201ENST00000284767 TWISTNBQ3B726 338 aaPredicted RBP23.11■■□□□ 1.29
PDLIM3-201ENST00000284767 MIS18AQ9NYP9 233 aa23.11■■□□□ 1.29
PDLIM3-201ENST00000284767 KDRP35968 1356 aa23.11■■□□□ 1.29
PDLIM3-201ENST00000284767 ITPRIPQ8IWB1 547 aa23.1■■□□□ 1.29
PDLIM3-201ENST00000284767 TMEM57Q8N5G2 664 aa23.1■■□□□ 1.29
PDLIM3-201ENST00000284767 UPF2Q9HAU5 1272 aaKnown RBP23.1■■□□□ 1.29
PDLIM3-201ENST00000284767 ALDH1L2Q3SY69 923 aa23.09■■□□□ 1.29
PDLIM3-201ENST00000284767 USP54Q70EL1 1684 aa23.09■■□□□ 1.29
PDLIM3-201ENST00000284767 FAM43AQ8N2R8 423 aa23.09■■□□□ 1.29
PDLIM3-201ENST00000284767 DDX17Q92841 729 aaKnown RBP23.09■■□□□ 1.29
PDLIM3-201ENST00000284767 C19orf44Q9H6X5 657 aa23.08■■□□□ 1.29
PDLIM3-201ENST00000284767 TMEM94Q12767 1356 aa23.08■■□□□ 1.29
PDLIM3-201ENST00000284767 STRCP1A6NGW2 1772 aa23.08■■□□□ 1.29
PDLIM3-201ENST00000284767 LTN1O94822 1766 aa23.08■■□□□ 1.29
PDLIM3-201ENST00000284767 KIF16BQ96L93 1317 aa23.08■■□□□ 1.28
PDLIM3-201ENST00000284767 MRPL50Q8N5N7 158 aaKnown RBP23.07■■□□□ 1.28
PDLIM3-201ENST00000284767 NFAT5O94916 1531 aa23.06■■□□□ 1.28
PDLIM3-201ENST00000284767 C1orf167Q5SNV9 1468 aa23.06■■□□□ 1.28
PDLIM3-201ENST00000284767 TBC1D32Q96NH3 1257 aa23.06■■□□□ 1.28
PDLIM3-201ENST00000284767 ANTXR1Q9H6X2 564 aa23.05■■□□□ 1.28
PDLIM3-201ENST00000284767 CHL1O00533 1208 aa23.04■■□□□ 1.28
PDLIM3-201ENST00000284767 KRT28Q7Z3Y7 464 aa23.04■■□□□ 1.28
PDLIM3-201ENST00000284767 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.04■■□□□ 1.28
PDLIM3-201ENST00000284767 KIF24Q5T7B8 1368 aa23.03■■□□□ 1.28
PDLIM3-201ENST00000284767 IP6K1Q92551 441 aa23.03■■□□□ 1.28
PDLIM3-201ENST00000284767 RWDD1Q9H446 243 aaPredicted RBP23.03■■□□□ 1.28
PDLIM3-201ENST00000284767 CRB1P82279 1406 aa23.03■■□□□ 1.28
PDLIM3-201ENST00000284767 IPO8O15397 1037 aaKnown RBP23.03■■□□□ 1.28
PDLIM3-201ENST00000284767 GCP02774 474 aa23.03■■□□□ 1.28
PDLIM3-201ENST00000284767 NBPF6Q5VWK0 638 aa23.02■■□□□ 1.28
PDLIM3-201ENST00000284767 RTF1Q92541 710 aaKnown RBP23.02■■□□□ 1.28
PDLIM3-201ENST00000284767 LRRC59Q96AG4 307 aaKnown RBP23.02■■□□□ 1.28
PDLIM3-201ENST00000284767 NBPF4Q96M43 638 aa23.02■■□□□ 1.28
PDLIM3-201ENST00000284767 KDM4FA0A1W2PPD8 638 aa23.02■■□□□ 1.28
PDLIM3-201ENST00000284767 PDZRN3Q9UPQ7 1066 aa23.02■■□□□ 1.28
PDLIM3-201ENST00000284767 ZNF428Q96B54 188 aa23.01■■□□□ 1.27
PDLIM3-201ENST00000284767 SLKQ9H2G2 1235 aaPredicted RBP23.01■■□□□ 1.27
PDLIM3-201ENST00000284767 ATF3P18847 181 aa23.01■■□□□ 1.27
PDLIM3-201ENST00000284767 L1TD1Q5T7N2 865 aaKnown RBP23.01■■□□□ 1.27
PDLIM3-201ENST00000284767 DDX19BQ9UMR2 479 aa23.01■■□□□ 1.27
PDLIM3-201ENST00000284767 KCNH5Q8NCM2 988 aa23■■□□□ 1.27
PDLIM3-201ENST00000284767 BRPF1P55201 1214 aaPredicted RBP22.99■■□□□ 1.27
PDLIM3-201ENST00000284767 GAS2L2Q8NHY3 880 aa22.99■■□□□ 1.27
PDLIM3-201ENST00000284767 RTL1A6NKG5 1358 aa22.99■■□□□ 1.27
PDLIM3-201ENST00000284767 MST1RQ04912 1400 aa22.98■■□□□ 1.27
PDLIM3-201ENST00000284767 TBC1D2Q9BYX2 928 aa22.97■■□□□ 1.27
PDLIM3-201ENST00000284767 TSPYL4Q9UJ04 414 aa22.97■■□□□ 1.27
PDLIM3-201ENST00000284767 TRPM3Q9HCF6 1732 aaPredicted RBP22.97■■□□□ 1.27
PDLIM3-201ENST00000284767 ARHGEF25Q86VW2 580 aa22.96■■□□□ 1.27
PDLIM3-201ENST00000284767 ZBTB40Q9NUA8 1239 aa22.96■■□□□ 1.27
PDLIM3-201ENST00000284767 RGPD2P0DJD1 1756 aa22.96■■□□□ 1.27
PDLIM3-201ENST00000284767 AXIN2Q9Y2T1 843 aa22.96■■□□□ 1.27
PDLIM3-201ENST00000284767 MSH6P52701 1360 aa22.95■■□□□ 1.26
PDLIM3-201ENST00000284767 GNAT3A8MTJ3 354 aa22.95■■□□□ 1.26
PDLIM3-201ENST00000284767 ZC3H6P61129 1189 aaKnown RBP22.95■■□□□ 1.26
PDLIM3-201ENST00000284767 IL17REQ8NFR9 667 aa22.95■■□□□ 1.26
PDLIM3-201ENST00000284767 C1orf115Q9H7X2 142 aa22.94■■□□□ 1.26
PDLIM3-201ENST00000284767 ARHGAP45Q92619 1136 aa22.93■■□□□ 1.26
PDLIM3-201ENST00000284767 SLIT3O75094 1523 aa22.92■■□□□ 1.26
PDLIM3-201ENST00000284767 CABLES1Q8TDN4 633 aa22.92■■□□□ 1.26
PDLIM3-201ENST00000284767 LMTK3Q96Q04 1460 aa22.91■■□□□ 1.26
PDLIM3-201ENST00000284767 MAP3K5Q99683 1374 aa22.91■■□□□ 1.26
PDLIM3-201ENST00000284767 ABCC4O15439 1325 aa22.91■■□□□ 1.26
PDLIM3-201ENST00000284767 KIF1AQ12756 1690 aa22.91■■□□□ 1.26
PDLIM3-201ENST00000284767 ZBTB7BO15156 539 aaPredicted RBP22.91■■□□□ 1.26
PDLIM3-201ENST00000284767 KIAA0232Q92628 1395 aa22.9■■□□□ 1.26
PDLIM3-201ENST00000284767 ANKRD24Q8TF21 1146 aa22.9■■□□□ 1.26
PDLIM3-201ENST00000284767 CADPS2Q86UW7 1296 aa22.88■■□□□ 1.25
PDLIM3-201ENST00000284767 NECTIN2Q92692 538 aa22.88■■□□□ 1.25
PDLIM3-201ENST00000284767 LGR6Q9HBX8 967 aa22.88■■□□□ 1.25
PDLIM3-201ENST00000284767 MED1Q15648 1581 aaPredicted RBP22.88■■□□□ 1.25
PDLIM3-201ENST00000284767 SLC4A2P04920 1241 aa22.87■■□□□ 1.25
PDLIM3-201ENST00000284767 ZNF335Q9H4Z2 1342 aaPredicted RBP22.87■■□□□ 1.25
PDLIM3-201ENST00000284767 STRCQ7RTU9 1775 aa22.87■■□□□ 1.25
PDLIM3-201ENST00000284767 HTATSF1O43719 755 aaKnown RBP22.87■■□□□ 1.25
PDLIM3-201ENST00000284767 HDAC1Q13547 482 aaPredicted RBP22.87■■□□□ 1.25
PDLIM3-201ENST00000284767 API5Q9BZZ5 524 aaKnown RBP22.86■■□□□ 1.25
PDLIM3-201ENST00000284767 PHRF1Q9P1Y6 1649 aaKnown RBP22.86■■□□□ 1.25
PDLIM3-201ENST00000284767 ALS2Q96Q42 1657 aa22.86■■□□□ 1.25
PDLIM3-201ENST00000284767 G2E3Q7L622 706 aa22.86■■□□□ 1.25
PDLIM3-201ENST00000284767 C22orf23Q9BZE7 217 aa22.86■■□□□ 1.25
PDLIM3-201ENST00000284767 LRRC37A3O60309 1634 aa22.86■■□□□ 1.25
PDLIM3-201ENST00000284767 DCCP43146 1447 aa22.85■■□□□ 1.25
PDLIM3-201ENST00000284767 MCM4P33991 863 aa22.85■■□□□ 1.25
PDLIM3-201ENST00000284767 RGPD5Q99666 1765 aa22.85■■□□□ 1.25
PDLIM3-201ENST00000284767 RGS12O14924 1447 aa22.85■■□□□ 1.25
PDLIM3-201ENST00000284767 CHMP5Q9NZZ3 219 aa22.85■■□□□ 1.25
PDLIM3-201ENST00000284767 XIRP1Q702N8 1843 aaKnown RBP22.84■■□□□ 1.25
PDLIM3-201ENST00000284767 FSD2A1L4K1 749 aa22.83■■□□□ 1.24
PDLIM3-201ENST00000284767 ZNF530Q6P9A1 599 aaPredicted RBP22.83■■□□□ 1.24
PDLIM3-201ENST00000284767 GOLGA6L3A6NEY3 463 aa22.82■■□□□ 1.24
PDLIM3-201ENST00000284767 TAF7Q15545 349 aaPredicted RBP22.82■■□□□ 1.24
PDLIM3-201ENST00000284767 MPRIPQ6WCQ1 1025 aa22.82■■□□□ 1.24
PDLIM3-201ENST00000284767 NPHP3Q7Z494 1330 aa22.82■■□□□ 1.24
PDLIM3-201ENST00000284767 CHRNA2Q15822 529 aa22.82■■□□□ 1.24
PDLIM3-201ENST00000284767 NCOA3Q9Y6Q9 1424 aa22.82■■□□□ 1.24
PDLIM3-201ENST00000284767 PXDNQ92626 1479 aa22.81■■□□□ 1.24
PDLIM3-201ENST00000284767 F6X3S4 739 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms