RNA–Protein interactions for RNA: ENST00000272638.13

UBXN4-201, Transcript of UBX domain protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBXN4, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-201ENST00000272638 RIC3Q7Z5B4 369 aa15.33■□□□□ 0.04
UBXN4-201ENST00000272638 PHF8Q9UPP1 1060 aa15.33■□□□□ 0.04
UBXN4-201ENST00000272638 ABCC3O15438 1527 aa15.33■□□□□ 0.04
UBXN4-201ENST00000272638 RAPGEF4Q8WZA2 1011 aa15.33■□□□□ 0.04
UBXN4-201ENST00000272638 TNPO1Q92973 898 aaKnown RBP15.33■□□□□ 0.04
UBXN4-201ENST00000272638 SRCIN1Q9C0H9 1055 aa15.33■□□□□ 0.04
UBXN4-201ENST00000272638 PRR36Q9H6K5 1346 aa15.32■□□□□ 0.04
UBXN4-201ENST00000272638 SDSP20132 328 aa15.32■□□□□ 0.04
UBXN4-201ENST00000272638 BTBD11A6QL63 1104 aa15.32■□□□□ 0.04
UBXN4-201ENST00000272638 PIP4K2AP48426 406 aaPredicted RBP15.32■□□□□ 0.04
UBXN4-201ENST00000272638 ANKLE2Q86XL3 938 aa15.31■□□□□ 0.04
UBXN4-201ENST00000272638 CLASP1Q7Z460 1538 aa15.31■□□□□ 0.04
UBXN4-201ENST00000272638 PANK2Q9BZ23 570 aa15.31■□□□□ 0.04
UBXN4-201ENST00000272638 ERC2O15083 957 aa15.3■□□□□ 0.04
UBXN4-201ENST00000272638 POLR1AO95602 1720 aaPredicted RBP15.3■□□□□ 0.04
UBXN4-201ENST00000272638 FOSBP53539 338 aa15.3■□□□□ 0.04
UBXN4-201ENST00000272638 CWC27Q6UX04 472 aaKnown RBP15.3■□□□□ 0.04
UBXN4-201ENST00000272638 PHAXQ9H814 394 aaKnown RBP15.3■□□□□ 0.04
UBXN4-201ENST00000272638 CEP152O94986 1710 aa15.29■□□□□ 0.04
UBXN4-201ENST00000272638 TSPOAP1O95153 1857 aa15.29■□□□□ 0.04
UBXN4-201ENST00000272638 RABEP1Q15276 862 aa15.29■□□□□ 0.04
UBXN4-201ENST00000272638 TTC5Q8N0Z6 440 aa15.29■□□□□ 0.04
UBXN4-201ENST00000272638 PI4KAP2A4QPH2 592 aa15.29■□□□□ 0.04
UBXN4-201ENST00000272638 PI4KAP1Q8N8J0 262 aa15.29■□□□□ 0.04
UBXN4-201ENST00000272638 USP19O94966 1318 aa15.29■□□□□ 0.04
UBXN4-201ENST00000272638 GOLGA6L4A6NEF3 574 aa15.28■□□□□ 0.04
UBXN4-201ENST00000272638 CEP85Q6P2H3 762 aa15.28■□□□□ 0.04
UBXN4-201ENST00000272638 PLEKHM2Q8IWE5 1019 aa15.28■□□□□ 0.04
UBXN4-201ENST00000272638 PLEKHO1Q53GL0 409 aaPredicted RBP15.28■□□□□ 0.04
UBXN4-201ENST00000272638 ARHGAP45Q92619 1136 aa15.28■□□□□ 0.04
UBXN4-201ENST00000272638 MSNP26038 577 aaKnown RBP15.28■□□□□ 0.04
UBXN4-201ENST00000272638 G3BP1Q13283 466 aaKnown RBP eCLIP15.28■□□□□ 0.046e-8■□□□□ 10.3
UBXN4-201ENST00000272638 TTC22Q5TAA0 569 aa15.28■□□□□ 0.04
UBXN4-201ENST00000272638 PPP6R1Q9UPN7 881 aa15.28■□□□□ 0.04
UBXN4-201ENST00000272638 NEO1Q92859 1461 aa15.28■□□□□ 0.04
UBXN4-201ENST00000272638 PPRC1Q5VV67 1664 aaKnown RBP15.28■□□□□ 0.04
UBXN4-201ENST00000272638 ANKRD44Q8N8A2 993 aa15.27■□□□□ 0.04
UBXN4-201ENST00000272638 MX1P20591 662 aa15.27■□□□□ 0.04
UBXN4-201ENST00000272638 NEXNQ0ZGT2 675 aa15.27■□□□□ 0.04
UBXN4-201ENST00000272638 GPATCH3Q96I76 525 aa15.27■□□□□ 0.04
UBXN4-201ENST00000272638 PHF23Q9BUL5 403 aaPredicted RBP15.27■□□□□ 0.04
UBXN4-201ENST00000272638 VPS37CA5D8V6 355 aaPredicted RBP15.27■□□□□ 0.03
UBXN4-201ENST00000272638 CLASRPQ8N2M8 674 aaKnown RBP15.27■□□□□ 0.03
UBXN4-201ENST00000272638 SHROOM2Q13796 1616 aa15.27■□□□□ 0.03
UBXN4-201ENST00000272638 ATF3P18847 181 aa15.26■□□□□ 0.03
UBXN4-201ENST00000272638 MSH6P52701 1360 aa15.26■□□□□ 0.03
UBXN4-201ENST00000272638 HSP90B1P14625 803 aaKnown RBP15.26■□□□□ 0.03
UBXN4-201ENST00000272638 SLC39A6Q13433 755 aa15.26■□□□□ 0.03
UBXN4-201ENST00000272638 CHRNA2Q15822 529 aa15.26■□□□□ 0.03
UBXN4-201ENST00000272638 HECW2Q9P2P5 1572 aa15.26■□□□□ 0.03
UBXN4-201ENST00000272638 GORABQ5T7V8 394 aa15.26■□□□□ 0.03
UBXN4-201ENST00000272638 SIRT2Q8IXJ6 389 aa15.26■□□□□ 0.03
UBXN4-201ENST00000272638 GDPD2Q9HCC8 539 aa15.26■□□□□ 0.03
UBXN4-201ENST00000272638 CHPF2Q9P2E5 772 aa15.26■□□□□ 0.03
UBXN4-201ENST00000272638 PPP1R42Q7Z4L9 355 aa15.25■□□□□ 0.03
UBXN4-201ENST00000272638 NEUROD6Q96NK8 337 aa15.25■□□□□ 0.03
UBXN4-201ENST00000272638 CCDC85AQ96PX6 553 aaPredicted RBP15.25■□□□□ 0.03
UBXN4-201ENST00000272638 ROBO2Q9HCK4 1378 aa15.25■□□□□ 0.03
UBXN4-201ENST00000272638 CABLES1Q8TDN4 633 aa15.25■□□□□ 0.03
UBXN4-201ENST00000272638 SYTL4Q96C24 671 aaPredicted RBP15.25■□□□□ 0.03
UBXN4-201ENST00000272638 DCTPP1Q9H773 170 aa15.25■□□□□ 0.03
UBXN4-201ENST00000272638 NUCB2P80303 420 aa15.25■□□□□ 0.03
UBXN4-201ENST00000272638 LGR6Q9HBX8 967 aa15.25■□□□□ 0.03
UBXN4-201ENST00000272638 SPG7Q9UQ90 795 aa15.25■□□□□ 0.03
UBXN4-201ENST00000272638 EDC4Q6P2E9 1401 aaKnown RBP15.25■□□□□ 0.03
UBXN4-201ENST00000272638 CHL1O00533 1208 aa15.24■□□□□ 0.03
UBXN4-201ENST00000272638 CHAMP1Q96JM3 812 aa15.24■□□□□ 0.03
UBXN4-201ENST00000272638 STRN4Q9NRL3 753 aa15.24■□□□□ 0.03
UBXN4-201ENST00000272638 ZFYVE9O95405 1425 aa15.24■□□□□ 0.03
UBXN4-201ENST00000272638 CD2BP2O95400 341 aaKnown RBP15.23■□□□□ 0.03
UBXN4-201ENST00000272638 ZGPATQ8N5A5 531 aaKnown RBP15.23■□□□□ 0.03
UBXN4-201ENST00000272638 PDE1AP54750 535 aa15.23■□□□□ 0.03
UBXN4-201ENST00000272638 ORAI2Q96SN7 254 aa15.23■□□□□ 0.03
UBXN4-201ENST00000272638 CCDC8Q9H0W5 538 aaPredicted RBP15.23■□□□□ 0.03
UBXN4-201ENST00000272638 TULP4Q9NRJ4 1543 aa15.23■□□□□ 0.03
UBXN4-201ENST00000272638 SKOR2Q2VWA4 1001 aaPredicted RBP15.23■□□□□ 0.03
UBXN4-201ENST00000272638 GRPEL1Q9HAV7 217 aa15.23■□□□□ 0.03
UBXN4-201ENST00000272638 PNMA6EA0A0J9YXQ4 647 aa15.22■□□□□ 0.03
UBXN4-201ENST00000272638 GSPT1P15170 499 aaKnown RBP15.22■□□□□ 0.03
UBXN4-201ENST00000272638 TAF7LQ5H9L4 462 aa15.22■□□□□ 0.03
UBXN4-201ENST00000272638 AACSQ86V21 672 aa15.22■□□□□ 0.03
UBXN4-201ENST00000272638 DDX17Q92841 729 aaKnown RBP15.22■□□□□ 0.03
UBXN4-201ENST00000272638 DDX58O95786 925 aaKnown RBP15.22■□□□□ 0.03
UBXN4-201ENST00000272638 DNAJC2Q99543 621 aaKnown RBP15.22■□□□□ 0.03
UBXN4-201ENST00000272638 GLI2P10070 1586 aa15.22■□□□□ 0.03
UBXN4-201ENST00000272638 ABCA9Q8IUA7 1624 aa15.22■□□□□ 0.03
UBXN4-201ENST00000272638 KCNQ3O43525 872 aa15.22■□□□□ 0.03
UBXN4-201ENST00000272638 HOXC9P31274 260 aa15.22■□□□□ 0.03
UBXN4-201ENST00000272638 MRE11P49959 708 aa15.22■□□□□ 0.03
UBXN4-201ENST00000272638 FSD1Q9BTV5 496 aa15.22■□□□□ 0.03
UBXN4-201ENST00000272638 PA2G4Q9UQ80 394 aaKnown RBP15.22■□□□□ 0.03
UBXN4-201ENST00000272638 PTPRCP08575 1304 aa15.22■□□□□ 0.03
UBXN4-201ENST00000272638 PTCD1O75127 700 aaKnown RBP15.21■□□□□ 0.03
UBXN4-201ENST00000272638 NASPP49321 788 aaPredicted RBP15.21■□□□□ 0.03
UBXN4-201ENST00000272638 KIDINS220Q9ULH0 1771 aa15.21■□□□□ 0.03
UBXN4-201ENST00000272638 ADGRB3O60242 1522 aa15.21■□□□□ 0.03
UBXN4-201ENST00000272638 FIBPO43427 364 aa15.21■□□□□ 0.03
UBXN4-201ENST00000272638 TMEM2Q9UHN6 1383 aa15.21■□□□□ 0.02
UBXN4-201ENST00000272638 EVA1CP58658 441 aa15.21■□□□□ 0.02
UBXN4-201ENST00000272638 STK3Q13188 491 aa15.21■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms