RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 TRAK2O60296 914 aa20.64■□□□□ 0.89
VPS54-201ENST00000272322 CEP85Q6P2H3 762 aa20.63■□□□□ 0.89
VPS54-201ENST00000272322 STK31Q9BXU1 1019 aa20.62■□□□□ 0.89
VPS54-201ENST00000272322 CHMP4BQ9H444 224 aaKnown RBP20.62■□□□□ 0.89
VPS54-201ENST00000272322 CHAMP1Q96JM3 812 aa20.62■□□□□ 0.89
VPS54-201ENST00000272322 CDC45O75419 566 aa20.61■□□□□ 0.89
VPS54-201ENST00000272322 MAP4K4O95819 1239 aaPredicted RBP20.61■□□□□ 0.89
VPS54-201ENST00000272322 KIF2CQ99661 725 aa20.61■□□□□ 0.89
VPS54-201ENST00000272322 AATKQ6ZMQ8 1374 aa20.61■□□□□ 0.89
VPS54-201ENST00000272322 FOXD4L6Q3SYB3 417 aaPredicted RBP20.61■□□□□ 0.89
VPS54-201ENST00000272322 FOXD4L3Q6VB84 417 aaPredicted RBP20.61■□□□□ 0.89
VPS54-201ENST00000272322 RILPL2Q969X0 211 aa20.61■□□□□ 0.89
VPS54-201ENST00000272322 DCTPP1Q9H773 170 aa20.61■□□□□ 0.89
VPS54-201ENST00000272322 IL1RAPL2Q9NP60 686 aa20.61■□□□□ 0.89
VPS54-201ENST00000272322 SDSP20132 328 aa20.6■□□□□ 0.89
VPS54-201ENST00000272322 GAS2L2Q8NHY3 880 aa20.6■□□□□ 0.89
VPS54-201ENST00000272322 TNPO1Q92973 898 aaKnown RBP20.6■□□□□ 0.89
VPS54-201ENST00000272322 PLEKHG3A1L390 1219 aa20.6■□□□□ 0.89
VPS54-201ENST00000272322 DTNBO60941 627 aa20.6■□□□□ 0.89
VPS54-201ENST00000272322 NCLP19338 710 aaKnown RBP20.6■□□□□ 0.89
VPS54-201ENST00000272322 EIF5BO60841 1220 aaKnown RBP20.59■□□□□ 0.89
VPS54-201ENST00000272322 SETD1BQ9UPS6 1966 aaKnown RBP20.59■□□□□ 0.89
VPS54-201ENST00000272322 TRIM6-TRIM34B2RNG4 842 aa20.59■□□□□ 0.89
VPS54-201ENST00000272322 ADAMTS13Q76LX8 1427 aa20.59■□□□□ 0.89
VPS54-201ENST00000272322 CDK12Q9NYV4 1490 aaPredicted RBP20.59■□□□□ 0.89
VPS54-201ENST00000272322 ESCO1Q5FWF5 840 aa20.58■□□□□ 0.89
VPS54-201ENST00000272322 ANKRD44Q8N8A2 993 aa20.58■□□□□ 0.89
VPS54-201ENST00000272322 PTPRUQ92729 1446 aa20.58■□□□□ 0.89
VPS54-201ENST00000272322 LRRC59Q96AG4 307 aaKnown RBP20.58■□□□□ 0.89
VPS54-201ENST00000272322 SSFA2P28290 1259 aa20.58■□□□□ 0.89
VPS54-201ENST00000272322 PHAXQ9H814 394 aaKnown RBP20.58■□□□□ 0.89
VPS54-201ENST00000272322 INTS3Q68E01 1043 aaKnown RBP20.57■□□□□ 0.88
VPS54-201ENST00000272322 RBM25P49756 843 aaKnown RBP20.57■□□□□ 0.88
VPS54-201ENST00000272322 USP6P35125 1406 aa20.57■□□□□ 0.88
VPS54-201ENST00000272322 BRPF1P55201 1214 aaPredicted RBP20.57■□□□□ 0.88
VPS54-201ENST00000272322 PNMA6EA0A0J9YXQ4 647 aa20.56■□□□□ 0.88
VPS54-201ENST00000272322 TTC22Q5TAA0 569 aa20.56■□□□□ 0.88
VPS54-201ENST00000272322 KIF20BQ96Q89 1820 aa20.56■□□□□ 0.88
VPS54-201ENST00000272322 SPATA31D1Q6ZQQ2 1576 aa20.56■□□□□ 0.88
VPS54-201ENST00000272322 IL17REQ8NFR9 667 aa20.56■□□□□ 0.88
VPS54-201ENST00000272322 FLIIQ13045 1269 aa20.55■□□□□ 0.88
VPS54-201ENST00000272322 GOLGA6L3A6NEY3 463 aa20.55■□□□□ 0.88
VPS54-201ENST00000272322 PTCH1Q13635 1447 aa20.55■□□□□ 0.88
VPS54-201ENST00000272322 KCNQ3O43525 872 aa20.55■□□□□ 0.88
VPS54-201ENST00000272322 LGR6Q9HBX8 967 aa20.55■□□□□ 0.88
VPS54-201ENST00000272322 PKP1Q13835 747 aa20.54■□□□□ 0.88
VPS54-201ENST00000272322 THEMISQ8N1K5 641 aaPredicted RBP20.54■□□□□ 0.88
VPS54-201ENST00000272322 DLC1Q96QB1 1528 aa20.54■□□□□ 0.88
VPS54-201ENST00000272322 LRRFIP2Q9Y608 721 aaKnown RBP20.54■□□□□ 0.88
VPS54-201ENST00000272322 K7ELQ4 463 aaPredicted RBP20.54■□□□□ 0.88
VPS54-201ENST00000272322 PSME1Q06323 249 aa20.54■□□□□ 0.88
VPS54-201ENST00000272322 RTL1A6NKG5 1358 aa20.53■□□□□ 0.88
VPS54-201ENST00000272322 PIK3R4Q99570 1358 aa20.53■□□□□ 0.88
VPS54-201ENST00000272322 GNAT3A8MTJ3 354 aa20.53■□□□□ 0.88
VPS54-201ENST00000272322 HOXC9P31274 260 aa20.53■□□□□ 0.88
VPS54-201ENST00000272322 MPRIPQ6WCQ1 1025 aa20.53■□□□□ 0.88
VPS54-201ENST00000272322 XRCC6P12956 609 aaKnown RBP eCLIP20.52■□□□□ 0.88
VPS54-201ENST00000272322 RPAP2Q8IXW5 612 aaPredicted RBP20.52■□□□□ 0.88
VPS54-201ENST00000272322 HDGFL1Q5TGJ6 251 aa20.52■□□□□ 0.88
VPS54-201ENST00000272322 NUTM1Q86Y26 1132 aa20.52■□□□□ 0.88
VPS54-201ENST00000272322 NRXN3Q9Y4C0 1643 aa20.51■□□□□ 0.87
VPS54-201ENST00000272322 ZGPATQ8N5A5 531 aaKnown RBP20.51■□□□□ 0.87
VPS54-201ENST00000272322 LARP6Q9BRS8 491 aaKnown RBP20.51■□□□□ 0.87
VPS54-201ENST00000272322 GNAI2P04899 355 aa20.5■□□□□ 0.87
VPS54-201ENST00000272322 CDC42BPGQ6DT37 1551 aa20.5■□□□□ 0.87
VPS54-201ENST00000272322 SIRT1Q96EB6 747 aa20.5■□□□□ 0.87
VPS54-201ENST00000272322 AGLP35573 1532 aa20.49■□□□□ 0.87
VPS54-201ENST00000272322 HAP1P54257 671 aaPredicted RBP20.49■□□□□ 0.87
VPS54-201ENST00000272322 FLT4P35916 1363 aa20.49■□□□□ 0.87
VPS54-201ENST00000272322 HMMRO75330 724 aa20.49■□□□□ 0.87
VPS54-201ENST00000272322 ANO2Q9NQ90 1003 aa20.49■□□□□ 0.87
VPS54-201ENST00000272322 NBPF6Q5VWK0 638 aa20.48■□□□□ 0.87
VPS54-201ENST00000272322 NBPF4Q96M43 638 aa20.48■□□□□ 0.87
VPS54-201ENST00000272322 CCDC30Q5VVM6 783 aa20.47■□□□□ 0.87
VPS54-201ENST00000272322 CASC1Q6TDU7 716 aa20.47■□□□□ 0.87
VPS54-201ENST00000272322 ORAI2Q96SN7 254 aa20.47■□□□□ 0.87
VPS54-201ENST00000272322 USP26Q9BXU7 913 aa20.47■□□□□ 0.87
VPS54-201ENST00000272322 TBX22Q9Y458 520 aa20.47■□□□□ 0.87
VPS54-201ENST00000272322 PDE1AP54750 535 aa20.47■□□□□ 0.87
VPS54-201ENST00000272322 MCTP1Q6DN14 999 aa20.47■□□□□ 0.87
VPS54-201ENST00000272322 UPF3BQ9BZI7 483 aaKnown RBP20.47■□□□□ 0.87
VPS54-201ENST00000272322 ANKRD26Q9UPS8 1709 aa20.47■□□□□ 0.87
VPS54-201ENST00000272322 PHF8Q9UPP1 1060 aa20.47■□□□□ 0.87
VPS54-201ENST00000272322 OVOS2A0A0J9YW53 1432 aa20.47■□□□□ 0.87
VPS54-201ENST00000272322 OVOS2Q6IE36 1432 aa20.47■□□□□ 0.87
VPS54-201ENST00000272322 SURF6O75683 361 aaKnown RBP20.46■□□□□ 0.87
VPS54-201ENST00000272322 NEK4P51957 841 aa20.46■□□□□ 0.87
VPS54-201ENST00000272322 PTPRCP08575 1304 aa20.46■□□□□ 0.87
VPS54-201ENST00000272322 AIMP1Q12904 312 aaKnown RBP20.46■□□□□ 0.87
VPS54-201ENST00000272322 UNC5CLQ8IV45 518 aa20.46■□□□□ 0.87
VPS54-201ENST00000272322 DLG5Q8TDM6 1919 aa20.46■□□□□ 0.87
VPS54-201ENST00000272322 PLEKHG1Q9ULL1 1385 aa20.45■□□□□ 0.86
VPS54-201ENST00000272322 CRB1P82279 1406 aa20.45■□□□□ 0.86
VPS54-201ENST00000272322 TAF7Q15545 349 aaPredicted RBP20.45■□□□□ 0.86
VPS54-201ENST00000272322 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.45■□□□□ 0.86
VPS54-201ENST00000272322 PRAMEF22A3QJZ6 481 aa20.44■□□□□ 0.86
VPS54-201ENST00000272322 ZC3H6P61129 1189 aaKnown RBP20.44■□□□□ 0.86
VPS54-201ENST00000272322 RGS12O14924 1447 aa20.44■□□□□ 0.86
VPS54-201ENST00000272322 UBTFL1P0CB47 393 aaPredicted RBP20.44■□□□□ 0.86
VPS54-201ENST00000272322 CCT4P50991 539 aaKnown RBP20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms