RNA–Protein interactions for RNA: ENST00000263694.8

SNRNP40-201, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP40, Length 1,597 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-201ENST00000263694 RIPK4P57078 832 aa12.84□□□□□ -0.35
SNRNP40-201ENST00000263694 NGLY1Q96IV0 654 aa12.84□□□□□ -0.35
SNRNP40-201ENST00000263694 NEFMP07197 916 aa12.83□□□□□ -0.36
SNRNP40-201ENST00000263694 NFE2L2Q16236 605 aa12.83□□□□□ -0.36
SNRNP40-201ENST00000263694 MTHFSDQ2M296 383 aaKnown RBP12.83□□□□□ -0.36
SNRNP40-201ENST00000263694 FBXO41Q8TF61 875 aa12.82□□□□□ -0.36
SNRNP40-201ENST00000263694 CDCA7LQ96GN5 454 aa12.82□□□□□ -0.36
SNRNP40-201ENST00000263694 TRIM35Q9UPQ4 493 aa12.82□□□□□ -0.36
SNRNP40-201ENST00000263694 NCAPD2Q15021 1401 aa12.82□□□□□ -0.36
SNRNP40-201ENST00000263694 NRAPQ86VF7 1730 aa12.82□□□□□ -0.36
SNRNP40-201ENST00000263694 MEX3CQ5U5Q3 659 aaKnown RBP12.81□□□□□ -0.36
SNRNP40-201ENST00000263694 CHRDL2Q6WN34 429 aa12.81□□□□□ -0.36
SNRNP40-201ENST00000263694 WWC1Q8IX03 1113 aa12.81□□□□□ -0.36
SNRNP40-201ENST00000263694 THUMPD2Q9BTF0 503 aaKnown RBP12.81□□□□□ -0.36
SNRNP40-201ENST00000263694 CARD10Q9BWT7 1032 aa12.81□□□□□ -0.36
SNRNP40-201ENST00000263694 MEGF6O75095 1541 aa12.81□□□□□ -0.36
SNRNP40-201ENST00000263694 SLIT2O94813 1529 aa12.81□□□□□ -0.36
SNRNP40-201ENST00000263694 CRB1P82279 1406 aa12.8□□□□□ -0.36
SNRNP40-201ENST00000263694 DCTN1Q14203 1278 aa12.8□□□□□ -0.36
SNRNP40-201ENST00000263694 RAPGEF4Q8WZA2 1011 aa12.8□□□□□ -0.36
SNRNP40-201ENST00000263694 ZNF521Q96K83 1311 aa12.8□□□□□ -0.36
SNRNP40-201ENST00000263694 TATP17735 454 aaPredicted RBP12.79□□□□□ -0.36
SNRNP40-201ENST00000263694 NWD2Q9ULI1 1742 aa12.79□□□□□ -0.36
SNRNP40-201ENST00000263694 BCL9LQ86UU0 1499 aa12.78□□□□□ -0.36
SNRNP40-201ENST00000263694 UNC5CLQ8IV45 518 aa12.78□□□□□ -0.36
SNRNP40-201ENST00000263694 CCDC9Q9Y3X0 531 aaKnown RBP12.78□□□□□ -0.36
SNRNP40-201ENST00000263694 PLEKHO1Q53GL0 409 aaPredicted RBP12.77□□□□□ -0.36
SNRNP40-201ENST00000263694 MCM10Q7L590 875 aa12.77□□□□□ -0.36
SNRNP40-201ENST00000263694 FNBP4Q8N3X1 1017 aaPredicted RBP12.77□□□□□ -0.36
SNRNP40-201ENST00000263694 USP21Q9UK80 565 aa12.77□□□□□ -0.36
SNRNP40-201ENST00000263694 AFF2P51816 1311 aa12.77□□□□□ -0.37
SNRNP40-201ENST00000263694 CENPBP07199 599 aaPredicted RBP12.77□□□□□ -0.37
SNRNP40-201ENST00000263694 CCDC27Q2M243 656 aa12.77□□□□□ -0.37
SNRNP40-201ENST00000263694 ZNF530Q6P9A1 599 aaPredicted RBP12.77□□□□□ -0.37
SNRNP40-201ENST00000263694 GAS2L2Q8NHY3 880 aa12.77□□□□□ -0.37
SNRNP40-201ENST00000263694 SPATA31A1Q5TZJ5 1347 aa12.76□□□□□ -0.37
SNRNP40-201ENST00000263694 IL2RBP14784 551 aa12.76□□□□□ -0.37
SNRNP40-201ENST00000263694 GOLGA2Q08379 1002 aa12.76□□□□□ -0.37
SNRNP40-201ENST00000263694 NGEFQ8N5V2 710 aa12.76□□□□□ -0.37
SNRNP40-201ENST00000263694 SPATA31A5Q5VU36 1347 aa12.75□□□□□ -0.37
SNRNP40-201ENST00000263694 SPATA31A7Q8IWB4 1347 aa12.75□□□□□ -0.37
SNRNP40-201ENST00000263694 AMOTQ4VCS5 1084 aa12.75□□□□□ -0.37
SNRNP40-201ENST00000263694 GNAT3A8MTJ3 354 aa12.74□□□□□ -0.37
SNRNP40-201ENST00000263694 SLFN5Q08AF3 891 aa12.74□□□□□ -0.37
SNRNP40-201ENST00000263694 MPRIPQ6WCQ1 1025 aa12.74□□□□□ -0.37
SNRNP40-201ENST00000263694 WDR63Q8IWG1 891 aa12.74□□□□□ -0.37
SNRNP40-201ENST00000263694 IL17REQ8NFR9 667 aa12.74□□□□□ -0.37
SNRNP40-201ENST00000263694 LGR6Q9HBX8 967 aa12.74□□□□□ -0.37
SNRNP40-201ENST00000263694 LAS1LQ9Y4W2 734 aaKnown RBP12.74□□□□□ -0.37
SNRNP40-201ENST00000263694 OVOS2A0A0G2JMS6 1433 aa12.74□□□□□ -0.37
SNRNP40-201ENST00000263694 PARP4Q9UKK3 1724 aaKnown RBP12.74□□□□□ -0.37
SNRNP40-201ENST00000263694 MAP3K5Q99683 1374 aa12.74□□□□□ -0.37
SNRNP40-201ENST00000263694 CYP27B1O15528 508 aa12.73□□□□□ -0.37
SNRNP40-201ENST00000263694 PDE3BQ13370 1112 aa12.73□□□□□ -0.37
SNRNP40-201ENST00000263694 VPS72Q15906 364 aa12.73□□□□□ -0.37
SNRNP40-201ENST00000263694 ZCRB1Q8TBF4 217 aaKnown RBP12.73□□□□□ -0.37
SNRNP40-201ENST00000263694 RTF1Q92541 710 aaKnown RBP12.73□□□□□ -0.37
SNRNP40-201ENST00000263694 SPG7Q9UQ90 795 aa12.73□□□□□ -0.37
SNRNP40-201ENST00000263694 VIRMAQ69YN4 1812 aaKnown RBP12.73□□□□□ -0.37
SNRNP40-201ENST00000263694 PKD1L3Q7Z443 1732 aa12.73□□□□□ -0.37
SNRNP40-201ENST00000263694 LMOD3Q0VAK6 560 aa12.73□□□□□ -0.37
SNRNP40-201ENST00000263694 C1orf141Q5JVX7 400 aa12.73□□□□□ -0.37
SNRNP40-201ENST00000263694 DDX54Q8TDD1 881 aaKnown RBP12.73□□□□□ -0.37
SNRNP40-201ENST00000263694 TSR2Q969E8 191 aaKnown RBP12.73□□□□□ -0.37
SNRNP40-201ENST00000263694 SHANK3Q9BYB0 1731 aa12.72□□□□□ -0.37
SNRNP40-201ENST00000263694 WNK3Q9BYP7 1800 aa12.72□□□□□ -0.37
SNRNP40-201ENST00000263694 DISP2A7MBM2 1401 aa12.72□□□□□ -0.37
SNRNP40-201ENST00000263694 PHKG2P15735 406 aa12.72□□□□□ -0.37
SNRNP40-201ENST00000263694 FAM98CQ17RN3 349 aaKnown RBP12.72□□□□□ -0.37
SNRNP40-201ENST00000263694 AKAP4Q5JQC9 854 aa12.72□□□□□ -0.37
SNRNP40-201ENST00000263694 DUSP27Q5VZP5 1158 aa12.72□□□□□ -0.37
SNRNP40-201ENST00000263694 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.72□□□□□ -0.37
SNRNP40-201ENST00000263694 MIS18AQ9NYP9 233 aa12.72□□□□□ -0.37
SNRNP40-201ENST00000263694 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.71□□□□□ -0.37
SNRNP40-201ENST00000263694 TRMT2AQ8IZ69 625 aaKnown RBP12.71□□□□□ -0.37
SNRNP40-201ENST00000263694 E9PSI1 815 aa12.7□□□□□ -0.38
SNRNP40-201ENST00000263694 RNMTO43148 476 aaKnown RBP12.7□□□□□ -0.38
SNRNP40-201ENST00000263694 HTATSF1O43719 755 aaKnown RBP12.7□□□□□ -0.38
SNRNP40-201ENST00000263694 IFNL2Q8IZJ0 200 aa12.7□□□□□ -0.38
SNRNP40-201ENST00000263694 QTRT2Q9H974 415 aaKnown RBP12.7□□□□□ -0.38
SNRNP40-201ENST00000263694 POLA2Q14181 598 aa12.69□□□□□ -0.38
SNRNP40-201ENST00000263694 THRAP3Q9Y2W1 955 aaKnown RBP12.69□□□□□ -0.38
SNRNP40-201ENST00000263694 IL16Q14005 1332 aa12.69□□□□□ -0.38
SNRNP40-201ENST00000263694 EXOC5O00471 708 aa12.69□□□□□ -0.38
SNRNP40-201ENST00000263694 ZNF853P0CG23 659 aa12.69□□□□□ -0.38
SNRNP40-201ENST00000263694 BARGINQ6ZT62 677 aa12.69□□□□□ -0.38
SNRNP40-201ENST00000263694 GJD4Q96KN9 370 aaPredicted RBP12.69□□□□□ -0.38
SNRNP40-201ENST00000263694 KAT6BQ8WYB5 2073 aa12.68□□□□□ -0.38
SNRNP40-201ENST00000263694 KDM6AO15550 1401 aaPredicted RBP12.68□□□□□ -0.38
SNRNP40-201ENST00000263694 PCDH11XQ9BZA7 1347 aa12.68□□□□□ -0.38
SNRNP40-201ENST00000263694 PCDH11YQ9BZA8 1340 aa12.68□□□□□ -0.38
SNRNP40-201ENST00000263694 FANCIQ9NVI1 1328 aa12.68□□□□□ -0.38
SNRNP40-201ENST00000263694 GLI3P10071 1580 aa12.68□□□□□ -0.38
SNRNP40-201ENST00000263694 A0A0G2JS52 829 aa12.68□□□□□ -0.38
SNRNP40-201ENST00000263694 MYCNP04198 464 aaPredicted RBP12.68□□□□□ -0.38
SNRNP40-201ENST00000263694 MYT1Q01538 1121 aa12.68□□□□□ -0.38
SNRNP40-201ENST00000263694 MBIPQ9NS73 344 aa12.68□□□□□ -0.38
SNRNP40-201ENST00000263694 TRPC5Q9UL62 973 aaPredicted RBP12.68□□□□□ -0.38
SNRNP40-201ENST00000263694 SCN11AQ9UI33 1791 aa12.68□□□□□ -0.38
SNRNP40-201ENST00000263694 ATRNO75882 1429 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms