RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ZGPATQ8N5A5 531 aaKnown RBP15.55■□□□□ 0.08
LIG1-201ENST00000263274 ABCC4O15439 1325 aa15.54■□□□□ 0.08
LIG1-201ENST00000263274 LRRC7Q96NW7 1537 aa15.54■□□□□ 0.08
LIG1-201ENST00000263274 ZC3H13Q5T200 1668 aaKnown RBP15.54■□□□□ 0.08
LIG1-201ENST00000263274 PNPLA6Q8IY17 1366 aa15.54■□□□□ 0.08
LIG1-201ENST00000263274 FGD1P98174 961 aa15.54■□□□□ 0.08
LIG1-201ENST00000263274 EIF4A2Q14240 407 aaKnown RBP15.54■□□□□ 0.08
LIG1-201ENST00000263274 COL3A1P02461 1466 aaPredicted RBP15.54■□□□□ 0.08
LIG1-201ENST00000263274 ARHGEF28Q8N1W1 1705 aaKnown RBP15.54■□□□□ 0.08
LIG1-201ENST00000263274 NEK4P51957 841 aa15.53■□□□□ 0.08
LIG1-201ENST00000263274 ZFYVE9O95405 1425 aa15.53■□□□□ 0.08
LIG1-201ENST00000263274 FAM135BQ49AJ0 1406 aa15.53■□□□□ 0.08
LIG1-201ENST00000263274 PTPRMP28827 1452 aa15.53■□□□□ 0.08
LIG1-201ENST00000263274 CD163L1Q9NR16 1453 aa15.53■□□□□ 0.08
LIG1-201ENST00000263274 ZNF853P0CG23 659 aa15.53■□□□□ 0.08
LIG1-201ENST00000263274 ADGRB2O60241 1585 aa15.52■□□□□ 0.08
LIG1-201ENST00000263274 HMMRO75330 724 aa15.52■□□□□ 0.08
LIG1-201ENST00000263274 G2E3Q7L622 706 aa15.52■□□□□ 0.08
LIG1-201ENST00000263274 CLCN1P35523 988 aa15.52■□□□□ 0.07
LIG1-201ENST00000263274 HAP1P54257 671 aaPredicted RBP15.52■□□□□ 0.07
LIG1-201ENST00000263274 FKBP5Q13451 457 aaPredicted RBP15.52■□□□□ 0.07
LIG1-201ENST00000263274 CEP85Q6P2H3 762 aa15.52■□□□□ 0.07
LIG1-201ENST00000263274 ANKRD44Q8N8A2 993 aa15.52■□□□□ 0.07
LIG1-201ENST00000263274 AMPHP49418 695 aa15.52■□□□□ 0.07
LIG1-201ENST00000263274 STK31Q9BXU1 1019 aa15.52■□□□□ 0.07
LIG1-201ENST00000263274 USP26Q9BXU7 913 aa15.52■□□□□ 0.07
LIG1-201ENST00000263274 RBM27Q9P2N5 1060 aaKnown RBP15.52■□□□□ 0.07
LIG1-201ENST00000263274 MSNP26038 577 aaKnown RBP15.51■□□□□ 0.07
LIG1-201ENST00000263274 NUCB2P80303 420 aa15.51■□□□□ 0.07
LIG1-201ENST00000263274 RPAP2Q8IXW5 612 aaPredicted RBP15.51■□□□□ 0.07
LIG1-201ENST00000263274 ANO2Q9NQ90 1003 aa15.51■□□□□ 0.07
LIG1-201ENST00000263274 KIF13AQ9H1H9 1805 aa15.51■□□□□ 0.07
LIG1-201ENST00000263274 REC8O95072 547 aa15.51■□□□□ 0.07
LIG1-201ENST00000263274 SLC26A8Q96RN1 970 aa15.51■□□□□ 0.07
LIG1-201ENST00000263274 NEO1Q92859 1461 aa15.5■□□□□ 0.07
LIG1-201ENST00000263274 PTMSP20962 102 aa15.5■□□□□ 0.07
LIG1-201ENST00000263274 RIMS2Q9UQ26 1411 aa15.5■□□□□ 0.07
LIG1-201ENST00000263274 RRP9O43818 475 aaKnown RBP15.5■□□□□ 0.07
LIG1-201ENST00000263274 RNF214Q8ND24 703 aa15.5■□□□□ 0.07
LIG1-201ENST00000263274 ERBB4Q15303 1308 aa15.5■□□□□ 0.07
LIG1-201ENST00000263274 BRPF1P55201 1214 aaPredicted RBP15.5■□□□□ 0.07
LIG1-201ENST00000263274 NGDNQ8NEJ9 315 aaKnown RBP15.5■□□□□ 0.07
LIG1-201ENST00000263274 SIGLEC1Q9BZZ2 1709 aa15.49■□□□□ 0.07
LIG1-201ENST00000263274 MSH6P52701 1360 aa15.49■□□□□ 0.07
LIG1-201ENST00000263274 DDIT3P35638 169 aa15.49■□□□□ 0.07
LIG1-201ENST00000263274 RBM10P98175 930 aaKnown RBP15.49■□□□□ 0.07
LIG1-201ENST00000263274 PIK3C2BO00750 1634 aa15.49■□□□□ 0.07
LIG1-201ENST00000263274 MAP4K4O95819 1239 aaPredicted RBP15.48■□□□□ 0.07
LIG1-201ENST00000263274 USP32Q8NFA0 1604 aa15.48■□□□□ 0.07
LIG1-201ENST00000263274 ERC2O15083 957 aa15.48■□□□□ 0.07
LIG1-201ENST00000263274 IL1RAPL2Q9NP60 686 aa15.47■□□□□ 0.07
LIG1-201ENST00000263274 ACEP12821 1306 aa15.47■□□□□ 0.07
LIG1-201ENST00000263274 MPNDQ8N594 471 aa15.47■□□□□ 0.07
LIG1-201ENST00000263274 UPF3BQ9BZI7 483 aaKnown RBP15.47■□□□□ 0.07
LIG1-201ENST00000263274 METP08581 1390 aa15.47■□□□□ 0.07
LIG1-201ENST00000263274 HDGFP51858 240 aaKnown RBP15.46■□□□□ 0.07
LIG1-201ENST00000263274 KLHL40Q2TBA0 621 aa15.46■□□□□ 0.07
LIG1-201ENST00000263274 AK9Q5TCS8 1911 aa15.46■□□□□ 0.07
LIG1-201ENST00000263274 ISY1Q9ULR0 285 aaKnown RBP15.46■□□□□ 0.07
LIG1-201ENST00000263274 ARHGEF40Q8TER5 1519 aa15.46■□□□□ 0.07
LIG1-201ENST00000263274 PTCH1Q13635 1447 aa15.46■□□□□ 0.07
LIG1-201ENST00000263274 EIF2S2P20042 333 aaKnown RBP15.45■□□□□ 0.06
LIG1-201ENST00000263274 ARID3AQ99856 593 aa15.45■□□□□ 0.06
LIG1-201ENST00000263274 CHL1O00533 1208 aa15.45■□□□□ 0.06
LIG1-201ENST00000263274 ALKQ9UM73 1620 aa15.45■□□□□ 0.06
LIG1-201ENST00000263274 MTHFSDQ2M296 383 aaKnown RBP15.45■□□□□ 0.06
LIG1-201ENST00000263274 LARP6Q9BRS8 491 aaKnown RBP15.45■□□□□ 0.06
LIG1-201ENST00000263274 TTC21BQ7Z4L5 1316 aa15.45■□□□□ 0.06
LIG1-201ENST00000263274 EDC4Q6P2E9 1401 aaKnown RBP15.44■□□□□ 0.06
LIG1-201ENST00000263274 DTNBO60941 627 aa15.44■□□□□ 0.06
LIG1-201ENST00000263274 GNAI2P04899 355 aa15.44■□□□□ 0.06
LIG1-201ENST00000263274 PTMAP06454 111 aaKnown RBP15.44■□□□□ 0.06
LIG1-201ENST00000263274 PDE1AP54750 535 aa15.44■□□□□ 0.06
LIG1-201ENST00000263274 SYCE3A1L190 88 aa15.44■□□□□ 0.06
LIG1-201ENST00000263274 MCCP23508 829 aa15.44■□□□□ 0.06
LIG1-201ENST00000263274 ZSCAN23Q3MJ62 389 aa15.44■□□□□ 0.06
LIG1-201ENST00000263274 GDPD2Q9HCC8 539 aa15.44■□□□□ 0.06
LIG1-201ENST00000263274 MYO5BQ9ULV0 1848 aa15.44■□□□□ 0.06
LIG1-201ENST00000263274 CCDC173Q0VFZ6 552 aa15.44■□□□□ 0.06
LIG1-201ENST00000263274 PRR36Q9H6K5 1346 aa15.44■□□□□ 0.06
LIG1-201ENST00000263274 ARHGAP31Q2M1Z3 1444 aa15.43■□□□□ 0.06
LIG1-201ENST00000263274 PLCB2Q00722 1185 aa15.43■□□□□ 0.06
LIG1-201ENST00000263274 PRIM1P49642 420 aaKnown RBP15.43■□□□□ 0.06
LIG1-201ENST00000263274 MAP2P11137 1827 aaKnown RBP15.43■□□□□ 0.06
LIG1-201ENST00000263274 RTL1A6NKG5 1358 aa15.42■□□□□ 0.06
LIG1-201ENST00000263274 NCOA3Q9Y6Q9 1424 aa15.42■□□□□ 0.06
LIG1-201ENST00000263274 NUTM1Q86Y26 1132 aa15.42■□□□□ 0.06
LIG1-201ENST00000263274 LRRCC1Q9C099 1032 aa15.42■□□□□ 0.06
LIG1-201ENST00000263274 DIP2CQ9Y2E4 1556 aa15.42■□□□□ 0.06
LIG1-201ENST00000263274 NLRP6P59044 892 aa15.42■□□□□ 0.06
LIG1-201ENST00000263274 LMBRD1Q9NUN5 540 aa15.42■□□□□ 0.06
LIG1-201ENST00000263274 MED14O60244 1454 aa15.42■□□□□ 0.06
LIG1-201ENST00000263274 OS9Q13438 667 aaPredicted RBP15.41■□□□□ 0.06
LIG1-201ENST00000263274 TMX3Q96JJ7 454 aa15.41■□□□□ 0.06
LIG1-201ENST00000263274 RBSNQ9H1K0 784 aa15.41■□□□□ 0.06
LIG1-201ENST00000263274 KIAA1211Q6ZU35 1233 aa15.41■□□□□ 0.06
LIG1-201ENST00000263274 CWC22Q9HCG8 908 aaKnown RBP15.41■□□□□ 0.06
LIG1-201ENST00000263274 LRRFIP2Q9Y608 721 aaKnown RBP15.41■□□□□ 0.06
LIG1-201ENST00000263274 PIK3R4Q99570 1358 aa15.4■□□□□ 0.06
LIG1-201ENST00000263274 PTPRCP08575 1304 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms