RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 TRIM5Q9C035 493 aa10.33□□□□□ -0.76
PTCD3-201ENST00000254630 ZNF652Q9Y2D9 606 aa10.33□□□□□ -0.76
PTCD3-201ENST00000254630 CDKL5O76039 1030 aa10.32□□□□□ -0.76
PTCD3-201ENST00000254630 ZC3H6P61129 1189 aaKnown RBP10.32□□□□□ -0.76
PTCD3-201ENST00000254630 JMYQ8N9B5 988 aa10.32□□□□□ -0.76
PTCD3-201ENST00000254630 BCL11BQ9C0K0 894 aaPredicted RBP10.32□□□□□ -0.76
PTCD3-201ENST00000254630 SRGAP3O43295 1099 aa10.32□□□□□ -0.76
PTCD3-201ENST00000254630 ABCC5O15440 1437 aa10.32□□□□□ -0.76
PTCD3-201ENST00000254630 HMGB2P26583 209 aaKnown RBP10.32□□□□□ -0.76
PTCD3-201ENST00000254630 ZSCAN29Q8IWY8 852 aaPredicted RBP10.32□□□□□ -0.76
PTCD3-201ENST00000254630 K7ELQ4 463 aaPredicted RBP10.31□□□□□ -0.76
PTCD3-201ENST00000254630 MRE11P49959 708 aa10.31□□□□□ -0.76
PTCD3-201ENST00000254630 FAM13BQ9NYF5 915 aa10.31□□□□□ -0.76
PTCD3-201ENST00000254630 FIBPO43427 364 aa10.31□□□□□ -0.76
PTCD3-201ENST00000254630 TRAK2O60296 914 aa10.31□□□□□ -0.76
PTCD3-201ENST00000254630 STIM1Q13586 685 aa10.31□□□□□ -0.76
PTCD3-201ENST00000254630 MPHOSPH10O00566 681 aaKnown RBP10.31□□□□□ -0.76
PTCD3-201ENST00000254630 CWC27Q6UX04 472 aaKnown RBP10.31□□□□□ -0.76
PTCD3-201ENST00000254630 WAPLQ7Z5K2 1190 aa10.31□□□□□ -0.76
PTCD3-201ENST00000254630 RNF214Q8ND24 703 aa10.31□□□□□ -0.76
PTCD3-201ENST00000254630 CTNNA3Q9UI47 895 aa10.31□□□□□ -0.76
PTCD3-201ENST00000254630 UBAC1Q9BSL1 405 aa10.31□□□□□ -0.76
PTCD3-201ENST00000254630 LRP2BPQ9P2M1 347 aa10.31□□□□□ -0.76
PTCD3-201ENST00000254630 ZPR1O75312 459 aa10.3□□□□□ -0.76
PTCD3-201ENST00000254630 ZHX3Q9H4I2 956 aa10.3□□□□□ -0.76
PTCD3-201ENST00000254630 LRPPRCP42704 1394 aaKnown RBP10.3□□□□□ -0.76
PTCD3-201ENST00000254630 NAIPQ13075 1403 aa10.3□□□□□ -0.76
PTCD3-201ENST00000254630 NCOA1Q15788 1441 aa10.3□□□□□ -0.76
PTCD3-201ENST00000254630 TMPOP42166 694 aaKnown RBP10.3□□□□□ -0.76
PTCD3-201ENST00000254630 MYD88Q99836 296 aa10.3□□□□□ -0.76
PTCD3-201ENST00000254630 BICRAQ9NZM4 1560 aa10.3□□□□□ -0.76
PTCD3-201ENST00000254630 MIS18AQ9NYP9 233 aa10.3□□□□□ -0.76
PTCD3-201ENST00000254630 JAKMIP1Q96N16 626 aaKnown RBP10.3□□□□□ -0.76
PTCD3-201ENST00000254630 TNMDQ9H2S6 317 aa10.3□□□□□ -0.76
PTCD3-201ENST00000254630 FANCAO15360 1455 aa10.3□□□□□ -0.76
PTCD3-201ENST00000254630 WDR33Q9C0J8 1336 aaKnown RBP10.3□□□□□ -0.76
PTCD3-201ENST00000254630 NUTM1Q86Y26 1132 aa10.3□□□□□ -0.76
PTCD3-201ENST00000254630 FAM43AQ8N2R8 423 aa10.3□□□□□ -0.76
PTCD3-201ENST00000254630 USHBP1Q8N6Y0 703 aa10.3□□□□□ -0.76
PTCD3-201ENST00000254630 ERCC4Q92889 916 aaPredicted RBP10.3□□□□□ -0.76
PTCD3-201ENST00000254630 METTL24Q5JXM2 366 aa10.29□□□□□ -0.76
PTCD3-201ENST00000254630 TANGO6Q9C0B7 1094 aa10.29□□□□□ -0.76
PTCD3-201ENST00000254630 SERPINC1P01008 464 aa10.29□□□□□ -0.76
PTCD3-201ENST00000254630 MATR3P43243 847 aaKnown RBP eCLIP10.29□□□□□ -0.76
PTCD3-201ENST00000254630 MCM10Q7L590 875 aa10.29□□□□□ -0.76
PTCD3-201ENST00000254630 WASF1Q92558 559 aa10.29□□□□□ -0.76
PTCD3-201ENST00000254630 AKAP2Q9Y2D5 859 aa10.29□□□□□ -0.76
PTCD3-201ENST00000254630 IMMTQ16891 758 aaKnown RBP10.29□□□□□ -0.76
PTCD3-201ENST00000254630 CEP126Q9P2H0 1117 aa10.29□□□□□ -0.76
PTCD3-201ENST00000254630 RAB11FIP3O75154 756 aa10.29□□□□□ -0.76
PTCD3-201ENST00000254630 ZNF76P36508 570 aa10.29□□□□□ -0.76
PTCD3-201ENST00000254630 DUSP27Q5VZP5 1158 aa10.29□□□□□ -0.76
PTCD3-201ENST00000254630 ZSCAN31Q96LW9 406 aaPredicted RBP10.29□□□□□ -0.76
PTCD3-201ENST00000254630 DENND4BO75064 1496 aaPredicted RBP10.29□□□□□ -0.76
PTCD3-201ENST00000254630 ME1P48163 572 aa10.29□□□□□ -0.76
PTCD3-201ENST00000254630 AIDAQ96BJ3 306 aa10.29□□□□□ -0.76
PTCD3-201ENST00000254630 CCDC85AQ96PX6 553 aaPredicted RBP10.29□□□□□ -0.76
PTCD3-201ENST00000254630 ZNHIT6Q9NWK9 470 aaKnown RBP10.29□□□□□ -0.76
PTCD3-201ENST00000254630 FMNL2Q96PY5 1086 aa10.28□□□□□ -0.76
PTCD3-201ENST00000254630 BLOC1S2Q6QNY1 142 aa10.28□□□□□ -0.76
PTCD3-201ENST00000254630 KRT32Q14532 448 aa10.28□□□□□ -0.76
PTCD3-201ENST00000254630 AMOTQ4VCS5 1084 aa10.28□□□□□ -0.76
PTCD3-201ENST00000254630 HSP90B2PQ58FF3 399 aa10.28□□□□□ -0.76
PTCD3-201ENST00000254630 NOS1P29475 1434 aa10.28□□□□□ -0.76
PTCD3-201ENST00000254630 PPFIBP1Q86W92 1011 aa10.28□□□□□ -0.76
PTCD3-201ENST00000254630 TMEM57Q8N5G2 664 aa10.28□□□□□ -0.76
PTCD3-201ENST00000254630 MAP3K1Q13233 1512 aa10.27□□□□□ -0.76
PTCD3-201ENST00000254630 CBFA2T2O43439 604 aa10.27□□□□□ -0.76
PTCD3-201ENST00000254630 CCDC192P0DO97 292 aa10.27□□□□□ -0.76
PTCD3-201ENST00000254630 USP5P45974 858 aa10.27□□□□□ -0.76
PTCD3-201ENST00000254630 CAVIN4Q5BKX8 364 aa10.27□□□□□ -0.76
PTCD3-201ENST00000254630 IL1RAPL2Q9NP60 686 aa10.27□□□□□ -0.76
PTCD3-201ENST00000254630 NKTRP30414 1462 aaKnown RBP10.27□□□□□ -0.76
PTCD3-201ENST00000254630 IDH1O75874 414 aaKnown RBP10.27□□□□□ -0.77
PTCD3-201ENST00000254630 LARP1BQ659C4 914 aaKnown RBP10.27□□□□□ -0.77
PTCD3-201ENST00000254630 SPC24Q8NBT2 197 aa10.27□□□□□ -0.77
PTCD3-201ENST00000254630 SLFN5Q08AF3 891 aa10.27□□□□□ -0.77
PTCD3-201ENST00000254630 TMOD2Q9NZR1 351 aa10.27□□□□□ -0.77
PTCD3-201ENST00000254630 CCDC61Q9Y6R9 512 aa10.27□□□□□ -0.77
PTCD3-201ENST00000254630 URB2Q14146 1524 aaKnown RBP10.27□□□□□ -0.77
PTCD3-201ENST00000254630 THOC2Q8NI27 1593 aaKnown RBP10.27□□□□□ -0.77
PTCD3-201ENST00000254630 SCAF11Q99590 1463 aaKnown RBP10.27□□□□□ -0.77
PTCD3-201ENST00000254630 CEP57L1Q8IYX8 460 aa10.27□□□□□ -0.77
PTCD3-201ENST00000254630 SKIDA1Q1XH10 827 aa10.27□□□□□ -0.77
PTCD3-201ENST00000254630 PIBF1Q8WXW3 757 aa10.27□□□□□ -0.77
PTCD3-201ENST00000254630 CEP131Q9UPN4 1083 aa10.27□□□□□ -0.77
PTCD3-201ENST00000254630 TXLNBQ8N3L3 684 aa10.26□□□□□ -0.77
PTCD3-201ENST00000254630 DEF6Q9H4E7 631 aa10.26□□□□□ -0.77
PTCD3-201ENST00000254630 CASTP20810 708 aaKnown RBP10.26□□□□□ -0.77
PTCD3-201ENST00000254630 KRT85P78386 507 aa10.26□□□□□ -0.77
PTCD3-201ENST00000254630 NME9Q86XW9 330 aa10.26□□□□□ -0.77
PTCD3-201ENST00000254630 SPATA32Q96LK8 384 aa10.26□□□□□ -0.77
PTCD3-201ENST00000254630 ANKIB1Q9P2G1 1089 aa10.26□□□□□ -0.77
PTCD3-201ENST00000254630 ABCC11Q96J66 1382 aa10.26□□□□□ -0.77
PTCD3-201ENST00000254630 DHX8Q14562 1220 aaKnown RBP10.26□□□□□ -0.77
PTCD3-201ENST00000254630 TAF7Q15545 349 aaPredicted RBP10.26□□□□□ -0.77
PTCD3-201ENST00000254630 LARP1Q6PKG0 1096 aaKnown RBP10.26□□□□□ -0.77
PTCD3-201ENST00000254630 RPAP2Q8IXW5 612 aaPredicted RBP10.26□□□□□ -0.77
PTCD3-201ENST00000254630 SEC63Q9UGP8 760 aaKnown RBP10.26□□□□□ -0.77
PTCD3-201ENST00000254630 POLR3DP05423 398 aaPredicted RBP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 756.7 ms