RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 USHBP1Q8N6Y0 703 aa21.39■■□□□ 1.02
FOXA1-201ENST00000250448 ZKSCAN2Q63HK3 967 aa21.39■■□□□ 1.01
FOXA1-201ENST00000250448 GCP02774 474 aa21.38■■□□□ 1.01
FOXA1-201ENST00000250448 DCCP43146 1447 aa21.38■■□□□ 1.01
FOXA1-201ENST00000250448 L1TD1Q5T7N2 865 aaKnown RBP21.37■■□□□ 1.01
FOXA1-201ENST00000250448 CABLES1Q8TDN4 633 aa21.37■■□□□ 1.01
FOXA1-201ENST00000250448 LTN1O94822 1766 aa21.37■■□□□ 1.01
FOXA1-201ENST00000250448 NCOA3Q9Y6Q9 1424 aa21.37■■□□□ 1.01
FOXA1-201ENST00000250448 FTSJ3Q8IY81 847 aaKnown RBP21.37■■□□□ 1.01
FOXA1-201ENST00000250448 DZIP1LQ8IYY4 767 aaKnown RBP21.36■■□□□ 1.01
FOXA1-201ENST00000250448 TRPM3Q9HCF6 1732 aaPredicted RBP21.36■■□□□ 1.01
FOXA1-201ENST00000250448 NFAT5O94916 1531 aa21.36■■□□□ 1.01
FOXA1-201ENST00000250448 KIF1AQ12756 1690 aa21.35■■□□□ 1.01
FOXA1-201ENST00000250448 CT47B1P0C2W7 299 aaPredicted RBP21.35■■□□□ 1.01
FOXA1-201ENST00000250448 ZC3H6P61129 1189 aaKnown RBP21.35■■□□□ 1.01
FOXA1-201ENST00000250448 USP54Q70EL1 1684 aa21.35■■□□□ 1.01
FOXA1-201ENST00000250448 EXOSC9Q06265 439 aaKnown RBP21.35■■□□□ 1.01
FOXA1-201ENST00000250448 BRINP3Q76B58 766 aa21.35■■□□□ 1.01
FOXA1-201ENST00000250448 RGPD1P0DJD0 1748 aa21.35■■□□□ 1.01
FOXA1-201ENST00000250448 AEBP2Q6ZN18 517 aaPredicted RBP21.34■■□□□ 1.01
FOXA1-201ENST00000250448 KCNH5Q8NCM2 988 aa21.34■■□□□ 1.01
FOXA1-201ENST00000250448 DLG5Q8TDM6 1919 aa21.34■■□□□ 1.01
FOXA1-201ENST00000250448 SLAIN2Q9P270 581 aa21.33■■□□□ 1.01
FOXA1-201ENST00000250448 IP6K1Q92551 441 aa21.33■■□□□ 1
FOXA1-201ENST00000250448 LRRC59Q96AG4 307 aaKnown RBP21.33■■□□□ 1
FOXA1-201ENST00000250448 IGSF1Q8N6C5 1336 aa21.32■■□□□ 1
FOXA1-201ENST00000250448 NPHP3Q7Z494 1330 aa21.32■■□□□ 1
FOXA1-201ENST00000250448 ARHGEF10O15013 1369 aa21.32■■□□□ 1
FOXA1-201ENST00000250448 MCM10Q7L590 875 aa21.31■■□□□ 1
FOXA1-201ENST00000250448 SMC4Q9NTJ3 1288 aa21.31■■□□□ 1
FOXA1-201ENST00000250448 C22orf23Q9BZE7 217 aa21.3■■□□□ 1
FOXA1-201ENST00000250448 MTHFSDQ2M296 383 aaKnown RBP21.3■■□□□ 1
FOXA1-201ENST00000250448 ARHGEF25Q86VW2 580 aa21.3■■□□□ 1
FOXA1-201ENST00000250448 AXIN2Q9Y2T1 843 aa21.3■■□□□ 1
FOXA1-201ENST00000250448 HDAC1Q13547 482 aaPredicted RBP21.3■■□□□ 1
FOXA1-201ENST00000250448 NBPF6Q5VWK0 638 aa21.3■■□□□ 1
FOXA1-201ENST00000250448 NBPF4Q96M43 638 aa21.3■■□□□ 1
FOXA1-201ENST00000250448 TRIM27P14373 513 aa21.29■■□□□ 1
FOXA1-201ENST00000250448 MFAP1P55081 439 aaKnown RBP21.29■■□□□ 1
FOXA1-201ENST00000250448 SPRYD3Q8NCJ5 442 aa21.29■■□□□ 1
FOXA1-201ENST00000250448 MCM4P33991 863 aa21.28■■□□□ 1
FOXA1-201ENST00000250448 DDX19BQ9UMR2 479 aa21.28■■□□□ 1
FOXA1-201ENST00000250448 MED1Q15648 1581 aaPredicted RBP21.27■■□□□ 1
FOXA1-201ENST00000250448 ELL2O00472 640 aaPredicted RBP21.27■■□□□ 1
FOXA1-201ENST00000250448 ALS2Q96Q42 1657 aa21.27■■□□□ 1
FOXA1-201ENST00000250448 IL16Q14005 1332 aa21.27■■□□□ 1
FOXA1-201ENST00000250448 KDRP35968 1356 aa21.27■■□□□ 1
FOXA1-201ENST00000250448 CHMP5Q9NZZ3 219 aa21.26■□□□□ 0.99
FOXA1-201ENST00000250448 KIF24Q5T7B8 1368 aa21.26■□□□□ 0.99
FOXA1-201ENST00000250448 SLIT3O75094 1523 aa21.26■□□□□ 0.99
FOXA1-201ENST00000250448 RTL1A6NKG5 1358 aa21.26■□□□□ 0.99
FOXA1-201ENST00000250448 ITPRIPQ8IWB1 547 aa21.26■□□□□ 0.99
FOXA1-201ENST00000250448 SSH1Q8WYL5 1049 aa21.26■□□□□ 0.99
FOXA1-201ENST00000250448 PXDNQ92626 1479 aa21.26■□□□□ 0.99
FOXA1-201ENST00000250448 CHRNA2Q15822 529 aa21.25■□□□□ 0.99
FOXA1-201ENST00000250448 RGPD2P0DJD1 1756 aa21.25■□□□□ 0.99
FOXA1-201ENST00000250448 ATF7IPQ6VMQ6 1270 aa21.25■□□□□ 0.99
FOXA1-201ENST00000250448 MBIPQ9NS73 344 aa21.25■□□□□ 0.99
FOXA1-201ENST00000250448 SPATA31A3Q5VYP0 1347 aa21.24■□□□□ 0.99
FOXA1-201ENST00000250448 LMOD3Q0VAK6 560 aa21.24■□□□□ 0.99
FOXA1-201ENST00000250448 SMC5Q8IY18 1101 aa21.24■□□□□ 0.99
FOXA1-201ENST00000250448 ANKRD24Q8TF21 1146 aa21.24■□□□□ 0.99
FOXA1-201ENST00000250448 TNS3Q68CZ2 1445 aa21.24■□□□□ 0.99
FOXA1-201ENST00000250448 GOLGA6L3A6NEY3 463 aa21.23■□□□□ 0.99
FOXA1-201ENST00000250448 TSPYL6Q8N831 410 aa21.23■□□□□ 0.99
FOXA1-201ENST00000250448 FSD2A1L4K1 749 aa21.23■□□□□ 0.99
FOXA1-201ENST00000250448 MIS18AQ9NYP9 233 aa21.23■□□□□ 0.99
FOXA1-201ENST00000250448 RRAGDQ9NQL2 400 aaPredicted RBP21.22■□□□□ 0.99
FOXA1-201ENST00000250448 GNAI1P63096 354 aa21.21■□□□□ 0.99
FOXA1-201ENST00000250448 HSCBQ8IWL3 235 aa21.21■□□□□ 0.99
FOXA1-201ENST00000250448 NOB1Q9ULX3 412 aaKnown RBP21.21■□□□□ 0.99
FOXA1-201ENST00000250448 RGPD5Q99666 1765 aa21.21■□□□□ 0.99
FOXA1-201ENST00000250448 IFT57Q9NWB7 429 aa21.21■□□□□ 0.99
FOXA1-201ENST00000250448 XRCC6P12956 609 aaKnown RBP eCLIP21.2■□□□□ 0.98
FOXA1-201ENST00000250448 KRT24Q2M2I5 525 aa21.2■□□□□ 0.98
FOXA1-201ENST00000250448 TMEM57Q8N5G2 664 aa21.2■□□□□ 0.98
FOXA1-201ENST00000250448 ZNF853P0CG23 659 aa21.2■□□□□ 0.98
FOXA1-201ENST00000250448 CALD1Q05682 793 aaKnown RBP21.19■□□□□ 0.98
FOXA1-201ENST00000250448 CFAP44Q96MT7 982 aa21.19■□□□□ 0.98
FOXA1-201ENST00000250448 ARXQ96QS3 562 aa21.19■□□□□ 0.98
FOXA1-201ENST00000250448 KIF16BQ96L93 1317 aa21.19■□□□□ 0.98
FOXA1-201ENST00000250448 C8orf58Q8NAV2 365 aa21.19■□□□□ 0.98
FOXA1-201ENST00000250448 ZBTB40Q9NUA8 1239 aa21.19■□□□□ 0.98
FOXA1-201ENST00000250448 RTF1Q92541 710 aaKnown RBP21.18■□□□□ 0.98
FOXA1-201ENST00000250448 GZF1Q9H116 711 aaPredicted RBP21.18■□□□□ 0.98
FOXA1-201ENST00000250448 TRAK2O60296 914 aa21.18■□□□□ 0.98
FOXA1-201ENST00000250448 GAS2L2Q8NHY3 880 aa21.17■□□□□ 0.98
FOXA1-201ENST00000250448 KIAA0232Q92628 1395 aa21.16■□□□□ 0.98
FOXA1-201ENST00000250448 SOS2Q07890 1332 aaPredicted RBP21.16■□□□□ 0.98
FOXA1-201ENST00000250448 IPO8O15397 1037 aaKnown RBP21.15■□□□□ 0.98
FOXA1-201ENST00000250448 PHRF1Q9P1Y6 1649 aaKnown RBP21.15■□□□□ 0.98
FOXA1-201ENST00000250448 NUCB1Q02818 461 aa21.15■□□□□ 0.98
FOXA1-201ENST00000250448 ERBB3P21860 1342 aa21.15■□□□□ 0.98
FOXA1-201ENST00000250448 DDX11L8A8MPP1 907 aa21.15■□□□□ 0.98
FOXA1-201ENST00000250448 RBM25P49756 843 aaKnown RBP21.15■□□□□ 0.98
FOXA1-201ENST00000250448 NLRP2Q9NX02 1062 aa21.15■□□□□ 0.98
FOXA1-201ENST00000250448 HAP1P54257 671 aaPredicted RBP21.14■□□□□ 0.97
FOXA1-201ENST00000250448 GNAT3A8MTJ3 354 aa21.14■□□□□ 0.97
FOXA1-201ENST00000250448 VAMP4O75379 141 aa21.14■□□□□ 0.97
FOXA1-201ENST00000250448 CSB-PGBD3P0DP91 1061 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms