RNA–Protein interactions for RNA: ENST00000220429.12

GABPB1-201, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 2,726 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-201ENST00000220429 DNAJC2Q99543 621 aaKnown RBP16.81■□□□□ 0.28
GABPB1-201ENST00000220429 EMILIN1Q9Y6C2 1016 aa16.81■□□□□ 0.28
GABPB1-201ENST00000220429 PLEKHG1Q9ULL1 1385 aa16.8■□□□□ 0.28
GABPB1-201ENST00000220429 EXOSC9Q06265 439 aaKnown RBP16.8■□□□□ 0.28
GABPB1-201ENST00000220429 RNF216Q9NWF9 866 aaPredicted RBP16.8■□□□□ 0.28
GABPB1-201ENST00000220429 IL16Q14005 1332 aa16.8■□□□□ 0.28
GABPB1-201ENST00000220429 CT47B1P0C2W7 299 aaPredicted RBP16.79■□□□□ 0.28
GABPB1-201ENST00000220429 ZNF710Q8N1W2 664 aa16.79■□□□□ 0.28
GABPB1-201ENST00000220429 PRKAR2BP31323 418 aa16.78■□□□□ 0.28
GABPB1-201ENST00000220429 MYRIPQ8NFW9 859 aa16.78■□□□□ 0.28
GABPB1-201ENST00000220429 ZKSCAN5Q9Y2L8 839 aa16.78■□□□□ 0.28
GABPB1-201ENST00000220429 AATKQ6ZMQ8 1374 aa16.78■□□□□ 0.28
GABPB1-201ENST00000220429 CDK12Q9NYV4 1490 aaPredicted RBP16.78■□□□□ 0.28
GABPB1-201ENST00000220429 MCM5P33992 734 aa16.77■□□□□ 0.28
GABPB1-201ENST00000220429 KCNJ4P48050 445 aa16.77■□□□□ 0.28
GABPB1-201ENST00000220429 ZNF771Q7L3S4 317 aaPredicted RBP16.77■□□□□ 0.28
GABPB1-201ENST00000220429 TOPAZ1Q8N9V7 1692 aa16.77■□□□□ 0.27
GABPB1-201ENST00000220429 IGSF3O75054 1194 aa16.76■□□□□ 0.27
GABPB1-201ENST00000220429 IL13P35225 146 aa16.76■□□□□ 0.27
GABPB1-201ENST00000220429 COG3Q96JB2 828 aa16.76■□□□□ 0.27
GABPB1-201ENST00000220429 PTPRUQ92729 1446 aa16.76■□□□□ 0.27
GABPB1-201ENST00000220429 FER1L4A9Z1Z3 1794 aa16.76■□□□□ 0.27
GABPB1-201ENST00000220429 HMOX1P09601 288 aa16.76■□□□□ 0.27
GABPB1-201ENST00000220429 ZNF692Q9BU19 519 aaPredicted RBP16.76■□□□□ 0.27
GABPB1-201ENST00000220429 PTMSP20962 102 aa16.75■□□□□ 0.27
GABPB1-201ENST00000220429 CERS3Q8IU89 383 aa16.75■□□□□ 0.27
GABPB1-201ENST00000220429 PHACTR3Q96KR7 559 aa16.75■□□□□ 0.27
GABPB1-201ENST00000220429 NRKQ7Z2Y5 1582 aa16.75■□□□□ 0.27
GABPB1-201ENST00000220429 ZKSCAN2Q63HK3 967 aa16.75■□□□□ 0.27
GABPB1-201ENST00000220429 SLC26A8Q96RN1 970 aa16.75■□□□□ 0.27
GABPB1-201ENST00000220429 PCDHB15Q9Y5E8 787 aa16.75■□□□□ 0.27
GABPB1-201ENST00000220429 RRS1Q15050 365 aaKnown RBP16.74■□□□□ 0.27
GABPB1-201ENST00000220429 SSH1Q8WYL5 1049 aa16.74■□□□□ 0.27
GABPB1-201ENST00000220429 SMC4Q9NTJ3 1288 aa16.74■□□□□ 0.27
GABPB1-201ENST00000220429 SLIT1O75093 1534 aa16.74■□□□□ 0.27
GABPB1-201ENST00000220429 DLG5Q8TDM6 1919 aa16.74■□□□□ 0.27
GABPB1-201ENST00000220429 GBP4Q96PP9 640 aa16.74■□□□□ 0.27
GABPB1-201ENST00000220429 ARHGAP23Q9P227 1491 aa16.74■□□□□ 0.27
GABPB1-201ENST00000220429 SPDYE4A6NLX3 237 aa16.73■□□□□ 0.27
GABPB1-201ENST00000220429 MVPQ14764 893 aaKnown RBP16.73■□□□□ 0.27
GABPB1-201ENST00000220429 PDLIM2Q96JY6 352 aa16.73■□□□□ 0.27
GABPB1-201ENST00000220429 NFE2L2Q16236 605 aa16.72■□□□□ 0.27
GABPB1-201ENST00000220429 JARID2Q92833 1246 aaPredicted RBP16.72■□□□□ 0.27
GABPB1-201ENST00000220429 PLPPR3Q6T4P5 718 aa16.72■□□□□ 0.27
GABPB1-201ENST00000220429 DZIP1LQ8IYY4 767 aaKnown RBP16.72■□□□□ 0.27
GABPB1-201ENST00000220429 EID1Q9Y6B2 187 aa16.72■□□□□ 0.27
GABPB1-201ENST00000220429 IBTKQ9P2D0 1353 aaPredicted RBP16.72■□□□□ 0.27
GABPB1-201ENST00000220429 NUTM2FA1L443 756 aa16.71■□□□□ 0.27
GABPB1-201ENST00000220429 PMFBP1Q8TBY8 1022 aa16.71■□□□□ 0.27
GABPB1-201ENST00000220429 TSC1Q92574 1164 aa16.71■□□□□ 0.27
GABPB1-201ENST00000220429 TNPO1Q92973 898 aaKnown RBP16.71■□□□□ 0.27
GABPB1-201ENST00000220429 TRIM27P14373 513 aa16.71■□□□□ 0.27
GABPB1-201ENST00000220429 BCCIPQ9P287 314 aaKnown RBP eCLIP16.71■□□□□ 0.27
GABPB1-201ENST00000220429 ACEP12821 1306 aa16.71■□□□□ 0.27
GABPB1-201ENST00000220429 TTC21BQ7Z4L5 1316 aa16.71■□□□□ 0.27
GABPB1-201ENST00000220429 PLEKHG3A1L390 1219 aa16.7■□□□□ 0.26
GABPB1-201ENST00000220429 SAMD1Q6SPF0 538 aaPredicted RBP16.7■□□□□ 0.26
GABPB1-201ENST00000220429 AEBP1Q8IUX7 1158 aa16.7■□□□□ 0.26
GABPB1-201ENST00000220429 GTF2F1P35269 517 aaKnown RBP eCLIP16.69■□□□□ 0.26
GABPB1-201ENST00000220429 MMP14P50281 582 aa16.69■□□□□ 0.26
GABPB1-201ENST00000220429 PRIMPOLQ96LW4 560 aa16.69■□□□□ 0.26
GABPB1-201ENST00000220429 AMOTL2Q9Y2J4 779 aa16.69■□□□□ 0.26
GABPB1-201ENST00000220429 THUMPD2Q9BTF0 503 aaKnown RBP16.69■□□□□ 0.26
GABPB1-201ENST00000220429 OVOS2A0A0J9YW53 1432 aa16.68■□□□□ 0.26
GABPB1-201ENST00000220429 OVOS2Q6IE36 1432 aa16.68■□□□□ 0.26
GABPB1-201ENST00000220429 ATF7IPQ6VMQ6 1270 aa16.68■□□□□ 0.26
GABPB1-201ENST00000220429 NOB1Q9ULX3 412 aaKnown RBP16.68■□□□□ 0.26
GABPB1-201ENST00000220429 NALCNQ8IZF0 1738 aa16.68■□□□□ 0.26
GABPB1-201ENST00000220429 USP6P35125 1406 aa16.68■□□□□ 0.26
GABPB1-201ENST00000220429 RGPD8O14715 1765 aaPredicted RBP16.68■□□□□ 0.26
GABPB1-201ENST00000220429 DDIT3P35638 169 aa16.68■□□□□ 0.26
GABPB1-201ENST00000220429 RBM25P49756 843 aaKnown RBP16.68■□□□□ 0.26
GABPB1-201ENST00000220429 HMGN5P82970 282 aaKnown RBP16.68■□□□□ 0.26
GABPB1-201ENST00000220429 TBX22Q9Y458 520 aa16.68■□□□□ 0.26
GABPB1-201ENST00000220429 CCDC66A2RUB6 948 aa16.66■□□□□ 0.26
GABPB1-201ENST00000220429 PDCL2Q8N4E4 241 aa16.66■□□□□ 0.26
GABPB1-201ENST00000220429 CCDC39Q9UFE4 941 aa16.66■□□□□ 0.26
GABPB1-201ENST00000220429 PTCH1Q13635 1447 aa16.66■□□□□ 0.26
GABPB1-201ENST00000220429 ALDH1L2Q3SY69 923 aa16.66■□□□□ 0.26
GABPB1-201ENST00000220429 HSCBQ8IWL3 235 aa16.66■□□□□ 0.26
GABPB1-201ENST00000220429 TIGD1Q96MW7 591 aa16.65■□□□□ 0.26
GABPB1-201ENST00000220429 PEAK1Q9H792 1746 aa16.65■□□□□ 0.26
GABPB1-201ENST00000220429 RWDD1Q9H446 243 aaPredicted RBP16.65■□□□□ 0.26
GABPB1-201ENST00000220429 HDAC5Q9UQL6 1122 aa16.65■□□□□ 0.26
GABPB1-201ENST00000220429 KIF16BQ96L93 1317 aa16.65■□□□□ 0.26
GABPB1-201ENST00000220429 SSH2Q76I76 1423 aa16.65■□□□□ 0.26
GABPB1-201ENST00000220429 THEMISQ8N1K5 641 aaPredicted RBP16.64■□□□□ 0.25
GABPB1-201ENST00000220429 KIF3AQ9Y496 699 aa16.64■□□□□ 0.25
GABPB1-201ENST00000220429 NCOA3Q9Y6Q9 1424 aa16.64■□□□□ 0.25
GABPB1-201ENST00000220429 DIP2AQ14689 1571 aa16.64■□□□□ 0.25
GABPB1-201ENST00000220429 ZNF853P0CG23 659 aa16.64■□□□□ 0.25
GABPB1-201ENST00000220429 EIF4A2Q14240 407 aaKnown RBP16.64■□□□□ 0.25
GABPB1-201ENST00000220429 ITPRIPQ8IWB1 547 aa16.64■□□□□ 0.25
GABPB1-201ENST00000220429 DDX19BQ9UMR2 479 aa16.64■□□□□ 0.25
GABPB1-201ENST00000220429 PDZRN3Q9UPQ7 1066 aa16.64■□□□□ 0.25
GABPB1-201ENST00000220429 HSP90AB1P08238 724 aaKnown RBP16.63■□□□□ 0.25
GABPB1-201ENST00000220429 TMEM57Q8N5G2 664 aa16.63■□□□□ 0.25
GABPB1-201ENST00000220429 IFT57Q9NWB7 429 aa16.63■□□□□ 0.25
GABPB1-201ENST00000220429 CIZ1Q9ULV3 898 aaPredicted RBP16.63■□□□□ 0.25
GABPB1-201ENST00000220429 ZNF445P59923 1031 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms