RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 ZCRB1Q8TBF4 217 aaKnown RBP30.74■■■□□ 2.51
VTI1B-201ENST00000216456 LRRC4BQ9NT99 713 aa30.74■■■□□ 2.51
VTI1B-201ENST00000216456 INSRP06213 1382 aa30.72■■■□□ 2.51
VTI1B-201ENST00000216456 PRIM1P49642 420 aaKnown RBP30.72■■■□□ 2.51
VTI1B-201ENST00000216456 KCNQ4P56696 695 aa30.72■■■□□ 2.51
VTI1B-201ENST00000216456 SYTL4Q96C24 671 aaPredicted RBP30.72■■■□□ 2.51
VTI1B-201ENST00000216456 ATF5Q9Y2D1 282 aaPredicted RBP30.71■■■□□ 2.51
VTI1B-201ENST00000216456 FLT4P35916 1363 aa30.7■■■□□ 2.51
VTI1B-201ENST00000216456 PPM1GO15355 546 aaPredicted RBP30.7■■■□□ 2.51
VTI1B-201ENST00000216456 ZNF827Q17R98 1081 aa30.7■■■□□ 2.51
VTI1B-201ENST00000216456 PPP1R1BQ9UD71 204 aaPredicted RBP30.7■■■□□ 2.51
VTI1B-201ENST00000216456 DOT1LQ8TEK3 1739 aa30.68■■■□□ 2.5
VTI1B-201ENST00000216456 SMG6Q86US8 1419 aaKnown RBP30.68■■■□□ 2.5
VTI1B-201ENST00000216456 PAPPAQ13219 1627 aa30.68■■■□□ 2.5
VTI1B-201ENST00000216456 NSD2O96028 1365 aa30.67■■■□□ 2.5
VTI1B-201ENST00000216456 EIF4G2P78344 907 aaKnown RBP eCLIP30.67■■■□□ 2.5
VTI1B-201ENST00000216456 PTGER2P43116 358 aa30.65■■■□□ 2.5
VTI1B-201ENST00000216456 RAPGEF4Q8WZA2 1011 aa30.65■■■□□ 2.5
VTI1B-201ENST00000216456 TNNT2P45379 298 aaPredicted RBP30.64■■■□□ 2.5
VTI1B-201ENST00000216456 TATP17735 454 aaPredicted RBP30.63■■■□□ 2.49
VTI1B-201ENST00000216456 CGNL1Q0VF96 1302 aa30.63■■■□□ 2.49
VTI1B-201ENST00000216456 KIF24Q5T7B8 1368 aa30.61■■■□□ 2.49
VTI1B-201ENST00000216456 PANK3Q9H999 370 aa30.6■■■□□ 2.49
VTI1B-201ENST00000216456 POLKQ9UBT6 870 aa30.6■■■□□ 2.49
VTI1B-201ENST00000216456 AKT1S1Q96B36 256 aa30.58■■■□□ 2.49
VTI1B-201ENST00000216456 CYP27B1O15528 508 aa30.57■■■□□ 2.48
VTI1B-201ENST00000216456 WASHC2AQ641Q2 1341 aa30.56■■■□□ 2.48
VTI1B-201ENST00000216456 ANKRD26Q9UPS8 1709 aa30.56■■■□□ 2.48
VTI1B-201ENST00000216456 EYA1Q99502 592 aa30.55■■■□□ 2.48
VTI1B-201ENST00000216456 MAP2P11137 1827 aaKnown RBP30.54■■■□□ 2.48
VTI1B-201ENST00000216456 SGIP1Q9BQI5 828 aa30.54■■■□□ 2.48
VTI1B-201ENST00000216456 MTFR1LQ9H019 292 aa30.54■■■□□ 2.48
VTI1B-201ENST00000216456 SLC27A3Q5K4L6 730 aa30.53■■■□□ 2.48
VTI1B-201ENST00000216456 PCDH11XQ9BZA7 1347 aa30.52■■■□□ 2.48
VTI1B-201ENST00000216456 PCDH11YQ9BZA8 1340 aa30.52■■■□□ 2.48
VTI1B-201ENST00000216456 NCAPD2Q15021 1401 aa30.52■■■□□ 2.48
VTI1B-201ENST00000216456 LY75O60449 1722 aa30.5■■■□□ 2.47
VTI1B-201ENST00000216456 PNPLA7Q6ZV29 1317 aa30.5■■■□□ 2.47
VTI1B-201ENST00000216456 CCNL1Q9UK58 526 aaPredicted RBP30.5■■■□□ 2.47
VTI1B-201ENST00000216456 EIF4A2Q14240 407 aaKnown RBP30.49■■■□□ 2.47
VTI1B-201ENST00000216456 TOGARAM1Q9Y4F4 1720 aa30.49■■■□□ 2.47
VTI1B-201ENST00000216456 MPRIPQ6WCQ1 1025 aa30.48■■■□□ 2.47
VTI1B-201ENST00000216456 FHDC1Q9C0D6 1143 aaPredicted RBP30.48■■■□□ 2.47
VTI1B-201ENST00000216456 TUBGCP6Q96RT7 1819 aa30.47■■■□□ 2.47
VTI1B-201ENST00000216456 TFCP2L1Q9NZI6 479 aa30.46■■■□□ 2.47
VTI1B-201ENST00000216456 PKD1L3Q7Z443 1732 aa30.46■■■□□ 2.47
VTI1B-201ENST00000216456 SYT17Q9BSW7 474 aa30.43■■■□□ 2.46
VTI1B-201ENST00000216456 ARXQ96QS3 562 aa30.41■■■□□ 2.46
VTI1B-201ENST00000216456 PALLDQ8WX93 1383 aa30.41■■■□□ 2.46
VTI1B-201ENST00000216456 PIGBQ92521 554 aa30.4■■■□□ 2.46
VTI1B-201ENST00000216456 SPG7Q9UQ90 795 aa30.39■■■□□ 2.46
VTI1B-201ENST00000216456 KIF7Q2M1P5 1343 aa30.39■■■□□ 2.46
VTI1B-201ENST00000216456 NKX1-1Q15270 411 aaPredicted RBP30.38■■■□□ 2.45
VTI1B-201ENST00000216456 MORC1Q86VD1 984 aa30.38■■■□□ 2.45
VTI1B-201ENST00000216456 ITGB4P16144 1822 aa30.38■■■□□ 2.45
VTI1B-201ENST00000216456 QSER1Q2KHR3 1735 aa30.37■■■□□ 2.45
VTI1B-201ENST00000216456 COL23A1Q86Y22 540 aaPredicted RBP30.37■■■□□ 2.45
VTI1B-201ENST00000216456 YY1P25490 414 aa30.36■■■□□ 2.45
VTI1B-201ENST00000216456 SMIM5Q71RC9 77 aa30.36■■■□□ 2.45
VTI1B-201ENST00000216456 PHKG2P15735 406 aa30.35■■■□□ 2.45
VTI1B-201ENST00000216456 IGSF1Q8N6C5 1336 aa30.35■■■□□ 2.45
VTI1B-201ENST00000216456 UTRNP46939 3433 aa30.34■■■□□ 2.45
VTI1B-201ENST00000216456 MSH5O43196 834 aa30.34■■■□□ 2.45
VTI1B-201ENST00000216456 AMIGO3Q86WK7 504 aa30.34■■■□□ 2.45
VTI1B-201ENST00000216456 KLHL34Q8N239 644 aa30.34■■■□□ 2.45
VTI1B-201ENST00000216456 AEBP1Q8IUX7 1158 aa30.33■■■□□ 2.45
VTI1B-201ENST00000216456 SLC16A10Q8TF71 515 aa30.33■■■□□ 2.45
VTI1B-201ENST00000216456 KNSTRNQ9Y448 316 aa30.33■■■□□ 2.45
VTI1B-201ENST00000216456 C5P01031 1676 aa30.33■■■□□ 2.45
VTI1B-201ENST00000216456 MSL1Q68DK7 614 aa30.32■■■□□ 2.44
VTI1B-201ENST00000216456 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP30.32■■■□□ 2.443e-6■□□□□ 11.2
VTI1B-201ENST00000216456 AMER1Q5JTC6 1135 aaPredicted RBP30.31■■■□□ 2.44
VTI1B-201ENST00000216456 ASAP1Q9ULH1 1129 aa30.31■■■□□ 2.44
VTI1B-201ENST00000216456 DCAF8L1A6NGE4 600 aa30.3■■■□□ 2.44
VTI1B-201ENST00000216456 IFNL2Q8IZJ0 200 aa30.3■■■□□ 2.44
VTI1B-201ENST00000216456 TMOD3Q9NYL9 352 aa30.28■■■□□ 2.44
VTI1B-201ENST00000216456 TAF1LQ8IZX4 1826 aa30.28■■■□□ 2.44
VTI1B-201ENST00000216456 POLD1P28340 1107 aa30.27■■■□□ 2.44
VTI1B-201ENST00000216456 SMARCC1Q92922 1105 aaPredicted RBP30.27■■■□□ 2.44
VTI1B-201ENST00000216456 COL24A1Q17RW2 1714 aa30.27■■■□□ 2.44
VTI1B-201ENST00000216456 LINC00116Q8NCU8 138 aa30.25■■■□□ 2.43
VTI1B-201ENST00000216456 NLGN2Q8NFZ4 835 aa30.25■■■□□ 2.43
VTI1B-201ENST00000216456 LOC102724428A0A0B4J2F2 783 aa30.24■■■□□ 2.43
VTI1B-201ENST00000216456 SIK1P57059 783 aa30.24■■■□□ 2.43
VTI1B-201ENST00000216456 ITPK1Q13572 414 aa30.24■■■□□ 2.43
VTI1B-201ENST00000216456 MAP3K5Q99683 1374 aa30.24■■■□□ 2.43
VTI1B-201ENST00000216456 C4BP0C0L5 1744 aa30.24■■■□□ 2.43
VTI1B-201ENST00000216456 CNGB1Q14028 1251 aaPredicted RBP30.23■■■□□ 2.43
VTI1B-201ENST00000216456 ATG3Q9NT62 314 aa30.23■■■□□ 2.43
VTI1B-201ENST00000216456 PHF14O94880 888 aa30.22■■■□□ 2.43
VTI1B-201ENST00000216456 ZNF530Q6P9A1 599 aaPredicted RBP30.22■■■□□ 2.43
VTI1B-201ENST00000216456 PER1O15534 1290 aaPredicted RBP30.21■■■□□ 2.43
VTI1B-201ENST00000216456 IL13P35225 146 aa30.21■■■□□ 2.43
VTI1B-201ENST00000216456 CC2D1BQ5T0F9 858 aaKnown RBP30.21■■■□□ 2.43
VTI1B-201ENST00000216456 SULT6B1Q6IMI4 303 aa30.21■■■□□ 2.43
VTI1B-201ENST00000216456 AK7Q96M32 723 aa30.21■■■□□ 2.43
VTI1B-201ENST00000216456 KDM6AO15550 1401 aaPredicted RBP30.2■■■□□ 2.42
VTI1B-201ENST00000216456 PLEKHO1Q53GL0 409 aaPredicted RBP30.19■■■□□ 2.42
VTI1B-201ENST00000216456 SLC4A9Q96Q91 983 aa30.18■■■□□ 2.42
VTI1B-201ENST00000216456 GOLGB1Q14789 3259 aaKnown RBP30.18■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms