RNA–Protein interactions for RNA: ENST00000191018.9

CTSA-201, Transcript of cathepsin A, humanhuman

TSL 1 (best) BASIC

Gene CTSA, Length 1,898 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-201ENST00000191018 NPHP3Q7Z494 1330 aa23.82■■□□□ 1.4
CTSA-201ENST00000191018 TWISTNBQ3B726 338 aaPredicted RBP23.82■■□□□ 1.4
CTSA-201ENST00000191018 LMOD2Q6P5Q4 547 aa23.82■■□□□ 1.4
CTSA-201ENST00000191018 C8orf58Q8NAV2 365 aa23.82■■□□□ 1.4
CTSA-201ENST00000191018 PXDNQ92626 1479 aa23.82■■□□□ 1.4
CTSA-201ENST00000191018 IPO8O15397 1037 aaKnown RBP23.81■■□□□ 1.4
CTSA-201ENST00000191018 NBPF6Q5VWK0 638 aa23.81■■□□□ 1.4
CTSA-201ENST00000191018 NBPF4Q96M43 638 aa23.81■■□□□ 1.4
CTSA-201ENST00000191018 TCERG1O14776 1098 aaKnown RBP23.8■■□□□ 1.4
CTSA-201ENST00000191018 FTSJ3Q8IY81 847 aaKnown RBP23.8■■□□□ 1.4
CTSA-201ENST00000191018 RTF1Q92541 710 aaKnown RBP23.8■■□□□ 1.4
CTSA-201ENST00000191018 CRYBG1Q9Y4K1 1723 aa23.8■■□□□ 1.4
CTSA-201ENST00000191018 KIAA0232Q92628 1395 aa23.8■■□□□ 1.4
CTSA-201ENST00000191018 MRPL50Q8N5N7 158 aaKnown RBP23.79■■□□□ 1.4
CTSA-201ENST00000191018 ZNF335Q9H4Z2 1342 aaPredicted RBP23.79■■□□□ 1.4
CTSA-201ENST00000191018 RGPD5Q99666 1765 aa23.79■■□□□ 1.4
CTSA-201ENST00000191018 DDX17Q92841 729 aaKnown RBP23.79■■□□□ 1.4
CTSA-201ENST00000191018 TNS3Q68CZ2 1445 aa23.78■■□□□ 1.4
CTSA-201ENST00000191018 USHBP1Q8N6Y0 703 aa23.78■■□□□ 1.4
CTSA-201ENST00000191018 GNAT3A8MTJ3 354 aa23.77■■□□□ 1.4
CTSA-201ENST00000191018 ELL2O00472 640 aaPredicted RBP23.77■■□□□ 1.4
CTSA-201ENST00000191018 ARHGAP45Q92619 1136 aa23.77■■□□□ 1.4
CTSA-201ENST00000191018 MAP3K5Q99683 1374 aa23.77■■□□□ 1.39
CTSA-201ENST00000191018 ZBTB7CA1YPR0 619 aa23.76■■□□□ 1.39
CTSA-201ENST00000191018 IGHDP01880 384 aa23.75■■□□□ 1.39
CTSA-201ENST00000191018 COL18A1P39060 1754 aa23.75■■□□□ 1.39
CTSA-201ENST00000191018 LMO7Q8WWI1 1683 aa23.74■■□□□ 1.39
CTSA-201ENST00000191018 BRINP3Q76B58 766 aa23.74■■□□□ 1.39
CTSA-201ENST00000191018 SPATA31A3Q5VYP0 1347 aa23.73■■□□□ 1.39
CTSA-201ENST00000191018 HAP1P54257 671 aaPredicted RBP23.73■■□□□ 1.39
CTSA-201ENST00000191018 LRRC59Q96AG4 307 aaKnown RBP23.73■■□□□ 1.39
CTSA-201ENST00000191018 DDX19BQ9UMR2 479 aa23.73■■□□□ 1.39
CTSA-201ENST00000191018 AXIN2Q9Y2T1 843 aa23.73■■□□□ 1.39
CTSA-201ENST00000191018 PCDHB15Q9Y5E8 787 aa23.73■■□□□ 1.39
CTSA-201ENST00000191018 ANKRD24Q8TF21 1146 aa23.73■■□□□ 1.39
CTSA-201ENST00000191018 ABCC6O95255 1503 aa23.72■■□□□ 1.39
CTSA-201ENST00000191018 TMEM57Q8N5G2 664 aa23.72■■□□□ 1.39
CTSA-201ENST00000191018 PLEKHG5O94827 1062 aa23.71■■□□□ 1.39
CTSA-201ENST00000191018 IL17REQ8NFR9 667 aa23.71■■□□□ 1.39
CTSA-201ENST00000191018 KRT24Q2M2I5 525 aa23.7■■□□□ 1.39
CTSA-201ENST00000191018 SKAP1Q86WV1 359 aa23.7■■□□□ 1.38
CTSA-201ENST00000191018 ITPRIPQ8IWB1 547 aa23.7■■□□□ 1.38
CTSA-201ENST00000191018 TSPYL4Q9UJ04 414 aa23.7■■□□□ 1.38
CTSA-201ENST00000191018 ERBB3P21860 1342 aa23.69■■□□□ 1.38
CTSA-201ENST00000191018 ZC3H6P61129 1189 aaKnown RBP23.68■■□□□ 1.38
CTSA-201ENST00000191018 BABAM1Q9NWV8 329 aa23.68■■□□□ 1.38
CTSA-201ENST00000191018 CEMIPQ8WUJ3 1361 aa23.68■■□□□ 1.38
CTSA-201ENST00000191018 MIS18AQ9NYP9 233 aa23.68■■□□□ 1.38
CTSA-201ENST00000191018 SLAIN2Q9P270 581 aa23.68■■□□□ 1.38
CTSA-201ENST00000191018 ABCC4O15439 1325 aa23.67■■□□□ 1.38
CTSA-201ENST00000191018 VIRMAQ69YN4 1812 aaKnown RBP23.67■■□□□ 1.38
CTSA-201ENST00000191018 FAM208AQ9UK61 1670 aaKnown RBP23.67■■□□□ 1.38
CTSA-201ENST00000191018 ZBTB40Q9NUA8 1239 aa23.66■■□□□ 1.38
CTSA-201ENST00000191018 SOS2Q07890 1332 aaPredicted RBP23.65■■□□□ 1.38
CTSA-201ENST00000191018 AMOTQ4VCS5 1084 aa23.65■■□□□ 1.38
CTSA-201ENST00000191018 CPDO75976 1380 aa23.65■■□□□ 1.38
CTSA-201ENST00000191018 API5Q9BZZ5 524 aaKnown RBP23.64■■□□□ 1.38
CTSA-201ENST00000191018 TAF7Q15545 349 aaPredicted RBP23.64■■□□□ 1.37
CTSA-201ENST00000191018 PLEKHO1Q53GL0 409 aaPredicted RBP23.64■■□□□ 1.37
CTSA-201ENST00000191018 CABLES1Q8TDN4 633 aa23.63■■□□□ 1.37
CTSA-201ENST00000191018 RWDD1Q9H446 243 aaPredicted RBP23.63■■□□□ 1.37
CTSA-201ENST00000191018 NHSL1Q5SYE7 1610 aa23.63■■□□□ 1.37
CTSA-201ENST00000191018 AKAP4Q5JQC9 854 aa23.62■■□□□ 1.37
CTSA-201ENST00000191018 KDM3BQ7LBC6 1761 aa23.62■■□□□ 1.37
CTSA-201ENST00000191018 RGS12O14924 1447 aa23.61■■□□□ 1.37
CTSA-201ENST00000191018 SOS1Q07889 1333 aaPredicted RBP23.61■■□□□ 1.37
CTSA-201ENST00000191018 ADAMTS7Q9UKP4 1686 aa23.61■■□□□ 1.37
CTSA-201ENST00000191018 PDE4AP27815 886 aa23.6■■□□□ 1.37
CTSA-201ENST00000191018 OVOS2A0A0G2JMS6 1433 aa23.6■■□□□ 1.37
CTSA-201ENST00000191018 ZBTB7BO15156 539 aaPredicted RBP23.6■■□□□ 1.37
CTSA-201ENST00000191018 HDAC1Q13547 482 aaPredicted RBP23.6■■□□□ 1.37
CTSA-201ENST00000191018 ZNF530Q6P9A1 599 aaPredicted RBP23.6■■□□□ 1.37
CTSA-201ENST00000191018 BACH2Q9BYV9 841 aa23.6■■□□□ 1.37
CTSA-201ENST00000191018 CACNA1FO60840 1977 aa23.6■■□□□ 1.37
CTSA-201ENST00000191018 ABCA3Q99758 1704 aa23.59■■□□□ 1.37
CTSA-201ENST00000191018 CHMP4BQ9H444 224 aaKnown RBP23.59■■□□□ 1.37
CTSA-201ENST00000191018 PTPRCP08575 1304 aa23.58■■□□□ 1.37
CTSA-201ENST00000191018 LGR6Q9HBX8 967 aa23.58■■□□□ 1.37
CTSA-201ENST00000191018 PLEKHG2Q9H7P9 1386 aa23.57■■□□□ 1.36
CTSA-201ENST00000191018 SIPA1L3O60292 1781 aaPredicted RBP23.56■■□□□ 1.36
CTSA-201ENST00000191018 SLC4A2P04920 1241 aa23.55■■□□□ 1.36
CTSA-201ENST00000191018 INTS3Q68E01 1043 aaKnown RBP23.55■■□□□ 1.36
CTSA-201ENST00000191018 RGS3P49796 1198 aa23.54■■□□□ 1.36
CTSA-201ENST00000191018 CHRNA2Q15822 529 aa23.54■■□□□ 1.36
CTSA-201ENST00000191018 C1orf141Q5JVX7 400 aa23.54■■□□□ 1.36
CTSA-201ENST00000191018 RNMTO43148 476 aaKnown RBP23.53■■□□□ 1.36
CTSA-201ENST00000191018 NLRP2Q9NX02 1062 aa23.53■■□□□ 1.36
CTSA-201ENST00000191018 MPRIPQ6WCQ1 1025 aa23.52■■□□□ 1.36
CTSA-201ENST00000191018 PDZRN3Q9UPQ7 1066 aa23.51■■□□□ 1.35
CTSA-201ENST00000191018 MEGF6O75095 1541 aa23.51■■□□□ 1.35
CTSA-201ENST00000191018 PKD1L3Q7Z443 1732 aa23.51■■□□□ 1.35
CTSA-201ENST00000191018 SCN11AQ9UI33 1791 aa23.51■■□□□ 1.35
CTSA-201ENST00000191018 TEFQ10587 303 aa23.51■■□□□ 1.35
CTSA-201ENST00000191018 CCDC30Q5VVM6 783 aa23.51■■□□□ 1.35
CTSA-201ENST00000191018 SMC5Q8IY18 1101 aa23.51■■□□□ 1.35
CTSA-201ENST00000191018 RAPGEF4Q8WZA2 1011 aa23.51■■□□□ 1.35
CTSA-201ENST00000191018 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.5■■□□□ 1.35
CTSA-201ENST00000191018 STK31Q9BXU1 1019 aa23.49■■□□□ 1.35
CTSA-201ENST00000191018 EIF4A1P60842 406 aaKnown RBP23.49■■□□□ 1.35
CTSA-201ENST00000191018 G2E3Q7L622 706 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms