RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 CRB1P82279 1406 aa10.41□□□□□ -0.74
VAMP3-201ENST00000054666 MTHFSDQ2M296 383 aaKnown RBP10.41□□□□□ -0.74
VAMP3-201ENST00000054666 LTN1O94822 1766 aa10.41□□□□□ -0.74
VAMP3-201ENST00000054666 TSPYL4Q9UJ04 414 aa10.41□□□□□ -0.74
VAMP3-201ENST00000054666 NWD1Q149M9 1564 aa10.4□□□□□ -0.74
VAMP3-201ENST00000054666 ZBTB7BO15156 539 aaPredicted RBP10.4□□□□□ -0.74
VAMP3-201ENST00000054666 HTATSF1O43719 755 aaKnown RBP10.4□□□□□ -0.74
VAMP3-201ENST00000054666 ESCO1Q5FWF5 840 aa10.4□□□□□ -0.74
VAMP3-201ENST00000054666 GCC1Q96CN9 775 aa10.4□□□□□ -0.74
VAMP3-201ENST00000054666 LRRC37A3O60309 1634 aa10.4□□□□□ -0.74
VAMP3-201ENST00000054666 PSME1Q06323 249 aa10.39□□□□□ -0.75
VAMP3-201ENST00000054666 PTPRCP08575 1304 aa10.39□□□□□ -0.75
VAMP3-201ENST00000054666 KCNH5Q8NCM2 988 aa10.39□□□□□ -0.75
VAMP3-201ENST00000054666 GNAT3A8MTJ3 354 aa10.38□□□□□ -0.75
VAMP3-201ENST00000054666 FOXO3O43524 673 aa10.38□□□□□ -0.75
VAMP3-201ENST00000054666 NUCB1Q02818 461 aa10.38□□□□□ -0.75
VAMP3-201ENST00000054666 RBM33Q96EV2 1170 aaKnown RBP10.38□□□□□ -0.75
VAMP3-201ENST00000054666 LTV1Q96GA3 475 aaPredicted RBP10.38□□□□□ -0.75
VAMP3-201ENST00000054666 C1orf115Q9H7X2 142 aa10.38□□□□□ -0.75
VAMP3-201ENST00000054666 MAP3K5Q99683 1374 aa10.38□□□□□ -0.75
VAMP3-201ENST00000054666 NFAT5O94916 1531 aa10.38□□□□□ -0.75
VAMP3-201ENST00000054666 BECN1Q14457 450 aa10.38□□□□□ -0.75
VAMP3-201ENST00000054666 KRT24Q2M2I5 525 aa10.38□□□□□ -0.75
VAMP3-201ENST00000054666 CHD1LQ86WJ1 897 aa10.37□□□□□ -0.75
VAMP3-201ENST00000054666 LNPKQ9C0E8 428 aa10.37□□□□□ -0.75
VAMP3-201ENST00000054666 INTS3Q68E01 1043 aaKnown RBP10.37□□□□□ -0.75
VAMP3-201ENST00000054666 KIF1AQ12756 1690 aa10.36□□□□□ -0.75
VAMP3-201ENST00000054666 PHRF1Q9P1Y6 1649 aaKnown RBP10.36□□□□□ -0.75
VAMP3-201ENST00000054666 USP19O94966 1318 aa10.36□□□□□ -0.75
VAMP3-201ENST00000054666 IP6K1Q92551 441 aa10.36□□□□□ -0.75
VAMP3-201ENST00000054666 STK31Q9BXU1 1019 aa10.36□□□□□ -0.75
VAMP3-201ENST00000054666 RGS12O14924 1447 aa10.36□□□□□ -0.75
VAMP3-201ENST00000054666 MSH6P52701 1360 aa10.36□□□□□ -0.75
VAMP3-201ENST00000054666 ZBTB7CA1YPR0 619 aa10.35□□□□□ -0.75
VAMP3-201ENST00000054666 SEC24BO95487 1268 aa10.35□□□□□ -0.75
VAMP3-201ENST00000054666 SOS1Q07889 1333 aaPredicted RBP10.35□□□□□ -0.75
VAMP3-201ENST00000054666 ANKRD45Q5TZF3 282 aa10.35□□□□□ -0.75
VAMP3-201ENST00000054666 TBC1D32Q96NH3 1257 aa10.35□□□□□ -0.75
VAMP3-201ENST00000054666 MIS18AQ9NYP9 233 aa10.35□□□□□ -0.75
VAMP3-201ENST00000054666 USP35Q9P2H5 1018 aa10.35□□□□□ -0.75
VAMP3-201ENST00000054666 SLC4A2P04920 1241 aa10.34□□□□□ -0.75
VAMP3-201ENST00000054666 SLC4A3P48751 1232 aa10.34□□□□□ -0.75
VAMP3-201ENST00000054666 BABAM1Q9NWV8 329 aa10.34□□□□□ -0.75
VAMP3-201ENST00000054666 FAM208AQ9UK61 1670 aaKnown RBP10.34□□□□□ -0.75
VAMP3-201ENST00000054666 SLIT3O75094 1523 aa10.34□□□□□ -0.75
VAMP3-201ENST00000054666 PROSER2Q86WR7 435 aaPredicted RBP10.34□□□□□ -0.75
VAMP3-201ENST00000054666 MFAP1P55081 439 aaKnown RBP10.33□□□□□ -0.76
VAMP3-201ENST00000054666 CCDC30Q5VVM6 783 aa10.33□□□□□ -0.76
VAMP3-201ENST00000054666 USHBP1Q8N6Y0 703 aa10.33□□□□□ -0.76
VAMP3-201ENST00000054666 CCT4P50991 539 aaKnown RBP10.33□□□□□ -0.76
VAMP3-201ENST00000054666 BMP2KLQ5H9B9 411 aa10.33□□□□□ -0.76
VAMP3-201ENST00000054666 LMOD2Q6P5Q4 547 aa10.33□□□□□ -0.76
VAMP3-201ENST00000054666 ATP10DQ9P241 1426 aa10.32□□□□□ -0.76
VAMP3-201ENST00000054666 TAF7Q15545 349 aaPredicted RBP10.32□□□□□ -0.76
VAMP3-201ENST00000054666 RPAP2Q8IXW5 612 aaPredicted RBP10.32□□□□□ -0.76
VAMP3-201ENST00000054666 ORAI2Q96SN7 254 aa10.32□□□□□ -0.76
VAMP3-201ENST00000054666 SIRT2Q8IXJ6 389 aa10.31□□□□□ -0.76
VAMP3-201ENST00000054666 ANKRD44Q8N8A2 993 aa10.31□□□□□ -0.76
VAMP3-201ENST00000054666 CACNA1FO60840 1977 aa10.31□□□□□ -0.76
VAMP3-201ENST00000054666 TRPM3Q9HCF6 1732 aaPredicted RBP10.31□□□□□ -0.76
VAMP3-201ENST00000054666 C1orf167Q5SNV9 1468 aa10.31□□□□□ -0.76
VAMP3-201ENST00000054666 HMMRO75330 724 aa10.31□□□□□ -0.76
VAMP3-201ENST00000054666 XPCQ01831 940 aaPredicted RBP10.31□□□□□ -0.76
VAMP3-201ENST00000054666 SLC4A10Q6U841 1118 aa10.31□□□□□ -0.76
VAMP3-201ENST00000054666 C22orf23Q9BZE7 217 aa10.31□□□□□ -0.76
VAMP3-201ENST00000054666 EIF5BO60841 1220 aaKnown RBP10.3□□□□□ -0.76
VAMP3-201ENST00000054666 GCP02774 474 aa10.3□□□□□ -0.76
VAMP3-201ENST00000054666 IL17REQ8NFR9 667 aa10.3□□□□□ -0.76
VAMP3-201ENST00000054666 CHMP4AQ9BY43 222 aa10.3□□□□□ -0.76
VAMP3-201ENST00000054666 C19orf44Q9H6X5 657 aa10.3□□□□□ -0.76
VAMP3-201ENST00000054666 LMO7Q8WWI1 1683 aa10.3□□□□□ -0.76
VAMP3-201ENST00000054666 MED1Q15648 1581 aaPredicted RBP10.3□□□□□ -0.76
VAMP3-201ENST00000054666 CEMIPQ8WUJ3 1361 aa10.3□□□□□ -0.76
VAMP3-201ENST00000054666 FLIIQ13045 1269 aa10.3□□□□□ -0.76
VAMP3-201ENST00000054666 FKBP5Q13451 457 aaPredicted RBP10.3□□□□□ -0.76
VAMP3-201ENST00000054666 NBPF6Q5VWK0 638 aa10.3□□□□□ -0.76
VAMP3-201ENST00000054666 CEP85Q6P2H3 762 aa10.3□□□□□ -0.76
VAMP3-201ENST00000054666 NBPF4Q96M43 638 aa10.3□□□□□ -0.76
VAMP3-201ENST00000054666 MEIS3Q99687 375 aa10.3□□□□□ -0.76
VAMP3-201ENST00000054666 DCTPP1Q9H773 170 aa10.3□□□□□ -0.76
VAMP3-201ENST00000054666 NCAPD2Q15021 1401 aa10.3□□□□□ -0.76
VAMP3-201ENST00000054666 PXDNLA1KZ92 1463 aa10.29□□□□□ -0.76
VAMP3-201ENST00000054666 ATF3P18847 181 aa10.29□□□□□ -0.76
VAMP3-201ENST00000054666 AMOTQ4VCS5 1084 aa10.29□□□□□ -0.76
VAMP3-201ENST00000054666 PLEKHO1Q53GL0 409 aaPredicted RBP10.29□□□□□ -0.76
VAMP3-201ENST00000054666 KRT28Q7Z3Y7 464 aa10.29□□□□□ -0.76
VAMP3-201ENST00000054666 ARHGEF25Q86VW2 580 aa10.29□□□□□ -0.76
VAMP3-201ENST00000054666 RGPD2P0DJD1 1756 aa10.29□□□□□ -0.76
VAMP3-201ENST00000054666 DCCP43146 1447 aa10.29□□□□□ -0.76
VAMP3-201ENST00000054666 PLEKHG5O94827 1062 aa10.29□□□□□ -0.76
VAMP3-201ENST00000054666 TEFQ10587 303 aa10.29□□□□□ -0.76
VAMP3-201ENST00000054666 AKAP4Q5JQC9 854 aa10.29□□□□□ -0.76
VAMP3-201ENST00000054666 C1orf141Q5JVX7 400 aa10.29□□□□□ -0.76
VAMP3-201ENST00000054666 ZNF530Q6P9A1 599 aaPredicted RBP10.29□□□□□ -0.76
VAMP3-201ENST00000054666 G2E3Q7L622 706 aa10.29□□□□□ -0.76
VAMP3-201ENST00000054666 N4BP2Q86UW6 1770 aaPredicted RBP10.28□□□□□ -0.76
VAMP3-201ENST00000054666 CAMTA1Q9Y6Y1 1673 aa10.28□□□□□ -0.76
VAMP3-201ENST00000054666 F6X3S4 739 aa10.28□□□□□ -0.76
VAMP3-201ENST00000054666 HDGFL1Q5TGJ6 251 aa10.28□□□□□ -0.76
VAMP3-201ENST00000054666 ANKRD24Q8TF21 1146 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms