RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 FNIP2Q9P278 1114 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 OPTCQ9UBM4 332 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 NUMBLQ9Y6R0 609 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 DEPDC5O75140 1603 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 STX16-NPEPL1H3BU86 382 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 HSD17B1P14061 328 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 PPM1FP49593 454 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 GNA12Q03113 381 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 TLR1Q15399 786 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 MED22Q15528 200 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 NPTX1Q15818 432 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ZCCHC12Q6PEW1 402 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CCBE1Q6UXH8 406 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 QSOX2Q6ZRP7 698 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CUZD1Q86UP6 607 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 HID1Q8IV36 788 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CCDC115Q96NT0 180 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ASB7Q9H672 318 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ADGRE2Q9UHX3 823 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 LRRTM2O43300 516 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 SSX5O60225 188 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ULK1O75385 1050 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CNTN5O94779 1100 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 NUDT7P0C024 238 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 S100PP25815 95 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 VEPH1Q14D04 833 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ARSHQ5FYA8 562 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 EPGNQ6UW88 154 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 UNC5AQ6ZN44 842 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 PRSS48Q7RTY5 328 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 TFAP2DQ7Z6R9 452 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 GTF3C2Q8WUA4 911 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 GAD1Q99259 594 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CDHR5Q9HBB8 845 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 RASSF1Q9NS23 344 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CYB5R1Q9UHQ9 305 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CMAHPQ9Y471 501 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ASTN1O14525 1302 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 STX16O14662 325 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 MSH4O15457 936 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CERS1P27544 350 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 RPL4P36578 427 aaKnown RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 RPS7P62081 194 aaKnown RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 SLC6A3Q01959 620 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CDKL4Q5MAI5 379 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 LLGL2Q6P1M3 1020 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 APTXQ7Z2E3 356 aaKnown RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 MILR1Q7Z6M3 343 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 GMCL1P1Q8NEA9 526 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 SGTBQ96EQ0 304 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CAMK1GQ96NX5 476 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 TMEM260Q9NX78 707 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 EIF3KQ9UBQ5 218 aaKnown RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 SEC22BO75396 215 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 LYPLA2O95372 231 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CHRM3P20309 590 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 SCNN1AP37088 669 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 DPP6P42658 865 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ALDH7A1P49419 539 aaKnown RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 TTPAP49638 278 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 YWHAZP63104 245 aaKnown RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 SLC3A1Q07837 685 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ACSM2AQ08AH3 577 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CSHL1Q14406 222 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF267Q14586 743 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ACSM2BQ68CK6 577 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 SLC2A7Q6PXP3 512 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 AMIGO1Q86WK6 493 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 OR7G3Q8NG95 312 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 FBXO30Q8TB52 745 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 PSD2Q9BQI7 771 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 TXLNGYQ9BZA5 131 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 ZFYVE1Q9HBF4 777 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 KLHL11Q9NVR0 708 aa4.64□□□□□ -1.67
SCN1A-220ENST00000641603 CYP7B1O75881 506 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 EGFRP00533 1210 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 RLN2P04090 185 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 RPN2P04844 631 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 TGFB3P10600 412 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ADRA2BP18089 450 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 SOAT1P35610 550 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 DGKQP52824 942 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 PIGGQ5H8A4 983 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 HHIPL2Q6UWX4 724 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ZBTB33Q86T24 672 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ADGRF2Q8IZF7 708 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ADAMTS16Q8TE57 1224 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ASB12Q8WXK4 309 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 KAT5Q92993 513 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 CEP295NLQ96MC4 621 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 KCNQ5Q9NR82 932 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF112Q9UJU3 913 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 TGOLN2O43493 480 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 PSIP1O75475 530 aaKnown RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 GLRBP48167 497 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ARFIP1P53367 373 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 NOMO3P69849 1222 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 DEFA6Q01524 100 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF33AQ06730 810 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 PGS1Q32NB8 556 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms