RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 SH3GLB2Q9NR46 395 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 APEX2Q9UBZ4 518 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 PGAP2Q9UHJ9 254 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 FBXO5Q9UKT4 447 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 TLR6Q9Y2C9 796 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 AFG3L2Q9Y4W6 797 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 VWDEQ8N2E2 1590 aa5.71□□□□□ -1.5
SCN1A-216ENST00000637968 DIP2CQ9Y2E4 1556 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 LACTBL1A8MY62 500 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 STX16O14662 325 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 CLIC2O15247 247 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 CAPN5O15484 640 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 PIAS1O75925 651 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 GUCA1CO95843 209 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 ADH1CP00326 375 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 C9P02748 559 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 FGFR1P11362 822 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 SPNP16150 400 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 TRAM2Q15035 370 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 LCN1P1Q5VSP4 162 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 ANKRD54Q6NXT1 300 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 AFTPHQ6ULP2 937 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 TSPYL5Q86VY4 417 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 TRIM69Q86WT6 500 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 DCP1BQ8IZD4 617 aaKnown RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 RBFAQ8N0V3 343 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 MFSD4AQ8N468 514 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 AVL9Q8NBF6 648 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 ST6GAL2Q96JF0 529 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 ASB2Q96Q27 587 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 GFM1Q96RP9 751 aaKnown RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 FAM49AQ9H0Q0 323 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 PCDHAC1Q9H158 963 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 GTSE1Q9NYZ3 720 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 CA5BQ9Y2D0 317 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF451Q9Y4E5 1061 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 V9GYQ6 96 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 KIF1BO60333 1816 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 ZC3H13Q5T200 1668 aaKnown RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 A0A0B4J269 797 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 ERVV-1B6SEH8 477 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 CDC7O00311 574 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 PITPNM1O00562 1244 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 CYB561D2O14569 222 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 DHRS4L1P0CG22 281 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 SMIM6P0DI80 62 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 CKBP12277 381 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 PDGFRAP16234 1089 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 TMEM11P17152 192 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 NPR2P20594 1047 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 ZP3P21754 424 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF81P51508 661 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 NDST1P52848 882 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 MVKQ03426 396 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 CHRNB3Q05901 458 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 FGL1Q08830 312 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF273Q14593 569 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 MFSD13AQ14CX5 517 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 AGKQ53H12 422 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 GADL1Q6ZQY3 521 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 KCTD1Q719H9 257 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 NRARPQ7Z6K4 114 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 RASGRP3Q8IV61 690 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 LCORLQ8N3X6 602 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 OR1M1Q8NGA1 313 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 PPP1R13LQ8WUF5 828 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 CANT1Q8WVQ1 401 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 GPKOWQ92917 476 aaPredicted RBP eCLIP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 RAD51AP1Q96B01 352 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 MTFMTQ96DP5 389 aaKnown RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 TMEM68Q96MH6 324 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 TTLL2Q9BWV7 592 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 LMAN2LQ9H0V9 348 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 SPNS1Q9H2V7 528 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF395Q9H8N7 513 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 PPP4R1LQ9P1A2 415 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 CDH9Q9ULB4 789 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 MAFBQ9Y5Q3 323 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 DISP2A7MBM2 1401 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 DEPDC5O75140 1603 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 E9PAM4 449 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 M0QZ92 97 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 PSMD9O00233 223 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 SNX4O95219 450 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 FADS2O95864 444 aaKnown RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 ELK3P41970 407 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 PIK3CGP48736 1102 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 RAB2AP61019 212 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 IFITM3Q01628 133 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 PRKCDQ05655 676 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 PYDC2Q56P42 97 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 TIGD3Q6B0B8 471 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 FAM131AQ6UXB0 335 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 ZNF540Q8NDQ6 660 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 OR6M1Q8NGM8 313 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 CPT1BQ92523 772 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 NKD2Q969F2 451 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-216ENST00000637968 ZBTB18Q99592 522 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 SEPHS2Q99611 448 aa5.7□□□□□ -1.5
SCN1A-216ENST00000637968 SLC25A23Q9BV35 468 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms