RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 PSMD3O43242 534 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 HOXC11O43248 304 aaPredicted RBP10.75□□□□□ -0.69
UPF3A-212ENST00000619079 RAP2AP10114 183 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 ENDOUP21128 410 aaKnown RBP10.75□□□□□ -0.69
UPF3A-212ENST00000619079 IGBP1P78318 339 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 FXNQ16595 210 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 GEN1Q17RS7 908 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 DUSP28Q4G0W2 176 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 PKDCCQ504Y2 493 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 FAM98BQ52LJ0 330 aaKnown RBP10.75□□□□□ -0.69
UPF3A-212ENST00000619079 IER5Q5VY09 327 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 BEND5Q7L4P6 421 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 IFNEQ86WN2 208 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 NT5DC4Q86YG4 428 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 PLD3Q8IV08 490 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 CCDC103Q8IW40 242 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 RIMKLAQ8IXN7 391 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 CLYBLQ8N0X4 340 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 SIMC1Q8NDZ2 872 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 PJA1Q8NG27 643 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 ANGPTL6Q8NI99 470 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 GRPEL2Q8TAA5 225 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 SLC35F5Q8WV83 523 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 PROX1Q92786 737 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 TMBIM1Q969X1 311 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 HPDLQ96IR7 371 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 NSMCE2Q96MF7 247 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 VAT1Q99536 393 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 SEPHS2Q99611 448 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 CCDC90BQ9GZT6 254 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 MMP27Q9H306 513 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 AKTIPQ9H8T0 292 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 FBRSL1Q9HCM7 1045 aaKnown RBP10.75□□□□□ -0.69
UPF3A-212ENST00000619079 CYP4F12Q9HCS2 524 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 FZD10Q9ULW2 581 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 PCDHGA3Q9Y5H0 932 aa10.75□□□□□ -0.69
UPF3A-212ENST00000619079 A0A1W2PP18 115 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 NEMP2A6NFY4 417 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 KCNK1O00180 336 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 GAS2O43903 313 aaKnown RBP10.74□□□□□ -0.69
UPF3A-212ENST00000619079 MAFO75444 373 aaPredicted RBP10.74□□□□□ -0.69
UPF3A-212ENST00000619079 NFICP08651 508 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 CXCL8P10145 99 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 ARSAP15289 507 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 ICAM3P32942 547 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 ST13P50502 369 aaKnown RBP10.74□□□□□ -0.69
UPF3A-212ENST00000619079 DEFA1P59665 94 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 DEFA3P59666 94 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 OSTNP61366 133 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 TUBA1BP68363 451 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 SP2Q02086 613 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 POU5F1BQ06416 359 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 ZNF460Q14592 562 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 TARBP2Q15633 366 aaKnown RBP10.74□□□□□ -0.69
UPF3A-212ENST00000619079 FSCN1Q16658 493 aaKnown RBP10.74□□□□□ -0.69
UPF3A-212ENST00000619079 MEP1AQ16819 746 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 UGT3A2Q3SY77 523 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 ATF7IP2Q5U623 682 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 ZNF544Q6NX49 715 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 BLOC1S3Q6QNY0 202 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 TUBA1AQ71U36 451 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 PAGE2Q7Z2X7 111 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 SVOPLQ8N434 492 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 MCFD2Q8NI22 146 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 FAR1Q8WVX9 515 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 YIPF6Q96EC8 236 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 ZNF300Q96RE9 604 aaPredicted RBP10.74□□□□□ -0.69
UPF3A-212ENST00000619079 CDK5RAP1Q96SZ6 601 aaKnown RBP10.74□□□□□ -0.69
UPF3A-212ENST00000619079 SLIRPQ9GZT3 109 aaKnown RBP10.74□□□□□ -0.69
UPF3A-212ENST00000619079 NTN4Q9HB63 628 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 PTPRHQ9HD43 1115 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 TNFRSF12AQ9NP84 129 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 USE1Q9NZ43 259 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 PMF1-BGLAPU3KQ54 211 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 ATP6AP2A0A1C7CYW4 349 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 G3V2T6 193 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 DUSP11O75319 330 aaKnown RBP10.74□□□□□ -0.69
UPF3A-212ENST00000619079 VPS4BO75351 444 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 ATP6AP2O75787 350 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 KCNK2O95069 426 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 STAU1O95793 577 aaKnown RBP10.74□□□□□ -0.69
UPF3A-212ENST00000619079 NPPAP01160 153 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 APOA1P02647 267 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 LTA4HP09960 611 aaKnown RBP10.74□□□□□ -0.69
UPF3A-212ENST00000619079 NOS2P35228 1153 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 ATXN1P54253 815 aaKnown RBP10.74□□□□□ -0.69
UPF3A-212ENST00000619079 KCNK10P57789 538 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 TAS2R39P59534 338 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 MVKQ03426 396 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 EMX1Q04741 257 aaPredicted RBP10.74□□□□□ -0.69
UPF3A-212ENST00000619079 CD47Q08722 323 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 GRIK2Q13002 908 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 TMEM132AQ24JP5 1023 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 AGAP6Q5VW22 663 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 CYHR1Q6ZMK1 362 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 PYROXD2Q8N2H3 581 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 SPATA6LQ8N4H0 392 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 KIAA1958Q8N8K9 716 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 SGCDQ92629 289 aa10.74□□□□□ -0.69
UPF3A-212ENST00000619079 L3HYPDHQ96EM0 354 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms