RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 FAM149AA5PLN7 773 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 SUN1O94901 812 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 TPH1P17752 444 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 KCNJ1P48048 391 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 TMPRSS15P98073 1019 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 HLTFQ14527 1009 aaKnown RBP eCLIP19.12■□□□□ 0.65
UPF1-212ENST00000601689 GPR33Q49SQ1 333 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 CERCAMQ5T4B2 595 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 DENND5AQ6IQ26 1287 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 CRTC3Q6UUV7 619 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 NLRP9Q7RTR0 991 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 SLC9B2Q86UD5 537 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 NRROSQ86YC3 692 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 DDHD1Q8NEL9 900 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 OR52K1Q8NGK4 314 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 TBRG4Q969Z0 631 aaKnown RBP eCLIP19.12■□□□□ 0.65
UPF1-212ENST00000601689 SH3KBP1Q96B97 665 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 NXPE2Q96DL1 559 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 GFM1Q96RP9 751 aaKnown RBP19.12■□□□□ 0.65
UPF1-212ENST00000601689 TIMM29Q9BSF4 260 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 FKBPLQ9UIM3 349 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 PRKAB1Q9Y478 270 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 DNMT3AQ9Y6K1 912 aaPredicted RBP19.12■□□□□ 0.65
UPF1-212ENST00000601689 PLXNB3Q9ULL4 1909 aa19.12■□□□□ 0.65
UPF1-212ENST00000601689 KLHL33A6NCF5 533 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 CHUKO15111 745 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 NOBOXO60393 691 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 UGT1A9O60656 530 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 SNX2O60749 519 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 MTX2O75431 263 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 ECEL1O95672 775 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 ETS1P14921 441 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 UGT1A6P19224 532 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 UGT1A1P22309 533 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 UGT1A4P22310 534 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 RPL22P35268 128 aaKnown RBP19.11■□□□□ 0.65
UPF1-212ENST00000601689 UGT1A3P35503 534 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 UGT1A5P35504 534 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 CLCNKAP51800 687 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 CDK16Q00536 496 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 NFATC2Q13469 925 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 SNX20Q7Z614 316 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 ARL14Q8N4G2 192 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 DCBLD1Q8N8Z6 715 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 OR13C4Q8NGS5 318 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 PTCD2Q8WV60 388 aaKnown RBP19.11■□□□□ 0.65
UPF1-212ENST00000601689 CNTNAP3BQ96NU0 1288 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 CNTNAP3Q9BZ76 1288 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 CCDC86Q9H6F5 360 aaKnown RBP19.11■□□□□ 0.65
UPF1-212ENST00000601689 UGT1A7Q9HAW7 530 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 UGT1A10Q9HAW8 530 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 UGT1A8Q9HAW9 530 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 EIF2B3Q9NR50 452 aaKnown RBP19.11■□□□□ 0.65
UPF1-212ENST00000601689 KLC4Q9NSK0 619 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 KCNK6Q9Y257 313 aa19.11■□□□□ 0.65
UPF1-212ENST00000601689 UNC13CQ8NB66 2214 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 ZNF106Q9H2Y7 1883 aaKnown RBP19.1■□□□□ 0.65
UPF1-212ENST00000601689 KIR2DS5A0A0G2JLQ3 304 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 A0A0G2JNG1 304 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 F8W8V4 182 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 KIR2DS3K7RE56 304 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 LDB2O43679 373 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 PROS1P07225 676 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 ZSCAN5DPP0CG00 497 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 ZNF7P17097 686 aaPredicted RBP19.1■□□□□ 0.65
UPF1-212ENST00000601689 IDSP22304 550 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 ADRA1DP25100 572 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 MC4RP32245 332 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 PPARGP37231 505 aaPredicted RBP19.1■□□□□ 0.65
UPF1-212ENST00000601689 GPR3P46089 330 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 ZNF140P52738 457 aaPredicted RBP19.1■□□□□ 0.65
UPF1-212ENST00000601689 KIR2DS5Q14953 304 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 ZRANB3Q5FWF4 1079 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 PERM1Q5SV97 790 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 ZNF648Q5T619 568 aaPredicted RBP19.1■□□□□ 0.65
UPF1-212ENST00000601689 GPRC6AQ5T6X5 926 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 CCDC137Q6PK04 289 aaKnown RBP19.1■□□□□ 0.65
UPF1-212ENST00000601689 CCNJLQ8IV13 435 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 PRELID2Q8N945 189 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 PPHLN1Q8NEY8 458 aaKnown RBP19.1■□□□□ 0.65
UPF1-212ENST00000601689 GATA6Q92908 595 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 MS4A14Q96JA4 679 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 SLC38A3Q99624 504 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 NAPGQ99747 312 aaPredicted RBP19.1■□□□□ 0.65
UPF1-212ENST00000601689 AP1M1Q9BXS5 423 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 LDHAL6BQ9BYZ2 381 aaPredicted RBP19.1■□□□□ 0.65
UPF1-212ENST00000601689 NRSN2Q9GZP1 204 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 ZMYND15Q9H091 742 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 LRRN3Q9H3W5 708 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 NLE1Q9NVX2 485 aaPredicted RBP19.1■□□□□ 0.65
UPF1-212ENST00000601689 BFARQ9NZS9 450 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 PLEKHM1Q9Y4G2 1056 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 AK5Q9Y6K8 562 aa19.1■□□□□ 0.65
UPF1-212ENST00000601689 CTAGE9A4FU28 777 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 TRABD2BA6NFA1 517 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 C1QTNF9BB2RNN3 333 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 H7C0S8 307 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 CSO75390 466 aaKnown RBP19.09■□□□□ 0.65
UPF1-212ENST00000601689 KRT14P02533 472 aa19.09■□□□□ 0.65
UPF1-212ENST00000601689 RPLP0P05388 317 aaKnown RBP19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms