RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	SH2D4B	Q5SQS7	431 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	NEPRO	Q6NW34	567 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	RIPOR1	Q6ZS17	1223 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	TPRG1	Q6ZUI0	275 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	CMC1	Q7Z7K0	106 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	TTC30B	Q8N4P2	665 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	TBATA	Q96M53	351 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	MCCC1	Q96RQ3	725 aa	Predicted RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	ACOX2	Q99424	681 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	AGAP2	Q99490	1192 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	ZNF184	Q99676	751 aa	Predicted RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	C19orf43	Q9BQ61	176 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	RTKN	Q9BST9	563 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	FAM167B	Q9BTA0	163 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	CCDC28B	Q9BUN5	200 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	C1QTNF1	Q9BXJ1	281 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	VCX3B	Q9H321	246 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	MFSD1	Q9H3U5	465 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	COG4	Q9H9E3	785 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	ZFYVE1	Q9HBF4	777 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	IARS2	Q9NSE4	1012 aa	Known RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	PPM1H	Q9ULR3	514 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	PKP3	Q9Y446	797 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	MIA3	Q5JRA6	1907 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	KIAA1549L	Q6ZVL6	1849 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	C1orf232	A0A0U1RR37	186 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	GOLGA8T	H3BQL2	631 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	KPNA3	O00505	521 aa	Predicted RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	NARS	O43776	548 aa	Known RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	SLC4A1	P02730	911 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	ANPEP	P15144	967 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	XPA	P23025	273 aa	Predicted RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	ARRB2	P32121	409 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	ARSD	P51689	593 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	TFF2	Q03403	129 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	UBAP2L	Q14157	1087 aa	Known RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	PTPRR	Q15256	657 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	SMAD1	Q15797	465 aa	Known RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	CFAP157	Q5JU67	520 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	C1orf146	Q5VVC0	180 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	SDE2	Q6IQ49	451 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	ANO7	Q6IWH7	933 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	LYSMD3	Q7Z3D4	306 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	PLD6	Q8N2A8	252 aa	Known RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	TMEM151A	Q8N4L1	468 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	CPSF7	Q8N684	471 aa	Known RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	OR4K2	Q8NGD2	314 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	OR13C4	Q8NGS5	318 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	SCG3	Q8WXD2	468 aa	Known RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	EZH1	Q92800	747 aa	Predicted RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	CCDC126	Q96EE4	140 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	CDKN2AIPNL	Q96HQ2	116 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	PANX3	Q96QZ0	392 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	NR1H4	Q96RI1	486 aa	Predicted RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	FAM129B	Q96TA1	746 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	VCX	Q9H320	206 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	PRSS16	Q9NQE7	514 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	PNPO	Q9NVS9	261 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	NDE1	Q9NXR1	346 aa		11.62	□□□□□ -0.55
VRK3-223	ENST00000601341	PRPF19	Q9UMS4	504 aa	Known RBP	11.62	□□□□□ -0.55
VRK3-223	ENST00000601341		A0A087X1B8	175 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	C16orf96	A6NNT2	1141 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	UPK3BL1	B0FP48	263 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	TARM1	B6A8C7	271 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	UPK3BL2	E5RIL1	263 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	THRA	P10827	490 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	CYP2A6	P11509	494 aa	Predicted RBP	11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	TIE1	P35590	1138 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	CPA2	P48052	419 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	RPL14	P50914	215 aa	Known RBP	11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	SEC13	P55735	322 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	DNAJB13	P59910	316 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	PTPRCAP	Q14761	206 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	HERC3	Q15034	1050 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	CDKN3	Q16667	212 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	SLC44A4	Q53GD3	710 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	PTAR1	Q7Z6K3	402 aa	Predicted RBP	11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	MAFA	Q8NHW3	353 aa	Predicted RBP	11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	FBXO27	Q8NI29	283 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	PIP4K2C	Q8TBX8	421 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	NRG4	Q8WWG1	115 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	PPP1R16A	Q96I34	528 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	GATA5	Q9BWX5	397 aa	Predicted RBP	11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	ZDHHC4	Q9NPG8	344 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	TCF7L2	Q9NQB0	619 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	POLR3B	Q9NW08	1133 aa	Predicted RBP	11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	IL17C	Q9P0M4	197 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	ACOT9	Q9Y305	439 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	F5	P12259	2224 aa		11.61	□□□□□ -0.55
VRK3-223	ENST00000601341	CCDC162P	A2VCL2	907 aa		11.6	□□□□□ -0.55
VRK3-223	ENST00000601341	ANTXRL	A6NF34	631 aa		11.6	□□□□□ -0.55
VRK3-223	ENST00000601341	NPIPB15	A6NHN6	443 aa	Predicted RBP	11.6	□□□□□ -0.55
VRK3-223	ENST00000601341	C1QTNF3-AMACR	E9PGA6	284 aa		11.6	□□□□□ -0.55
VRK3-223	ENST00000601341	CCL22	O00626	93 aa		11.6	□□□□□ -0.55
VRK3-223	ENST00000601341	NPHS1	O60500	1241 aa		11.6	□□□□□ -0.55
VRK3-223	ENST00000601341	SYNCRIP	O60506	623 aa	Known RBP	11.6	□□□□□ -0.55
VRK3-223	ENST00000601341	RNASEH1	O60930	286 aa	Known RBP	11.6	□□□□□ -0.55
VRK3-223	ENST00000601341	GOT2	P00505	430 aa	Known RBP	11.6	□□□□□ -0.55
VRK3-223	ENST00000601341	EGF	P01133	1207 aa		11.6	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms