RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 BORAQ6PGQ7 559 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 WDR74Q6RFH5 385 aaPredicted RBP17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 ATG14Q6ZNE5 492 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 ADGRG6Q86SQ4 1221 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 GDAP1Q8TB36 358 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 KIAA1143Q96AT1 154 aaPredicted RBP17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 RTP4Q96DX8 246 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 PLEKHG4BQ96PX9 1271 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 CHP1Q99653 195 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 TRIM39Q9HCM9 518 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 STARD5Q9NSY2 213 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 SCHIP1Q9P0W5 487 aaPredicted RBP17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 LCMT1Q9UIC8 334 aa17.36■□□□□ 0.37
SHKBP1-223ENST00000600552 KIR2DS5A0A0G2JLQ3 304 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 A0A0G2JNG1 304 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 ZNF891A8MT65 544 aaPredicted RBP17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 KIR2DS3K7RE56 304 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 PPP1R12AO14974 1030 aaPredicted RBP17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 PPFIA2O75334 1257 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 VIPP01282 170 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 TPM1P09493 284 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 SEPHS1P49903 392 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 GFERP55789 205 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 MC2RQ01718 297 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 KIR2DS5Q14953 304 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 C16orf46Q6P387 395 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 CEACAM20Q6UY09 585 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 ARHGAP22Q7Z5H3 698 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 RAVER1Q8IY67 606 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 NLGN4XQ8N0W4 816 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 BMPERQ8N8U9 685 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 NLGN4YQ8NFZ3 816 aaPredicted RBP17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 GLYATL1Q969I3 302 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 IMP4Q96G21 291 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 ELMO2Q96JJ3 720 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 CCDC42Q96M95 316 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 TGM7Q96PF1 710 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 ZSCAN5AQ9BUG6 496 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 SLC25A51Q9H1U9 297 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 PDP2Q9P2J9 529 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 SAE1Q9UBE0 346 aaPredicted RBP17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 SLC23A2Q9UGH3 650 aa17.35■□□□□ 0.37
SHKBP1-223ENST00000600552 LOC101059948A0A1B0GTJ6 334 aa17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 C3orf70A6NLC5 250 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 OR5K4A6NMS3 321 aa17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 POLR1CO15160 346 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 STK17BO94768 372 aa17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 SPTA1P02549 2419 aa17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 BPIP17213 487 aa17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 RPL10P27635 214 aaKnown RBP17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 HNRNPH3P31942 346 aaKnown RBP17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 ASTE1Q2TB18 679 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 KAZNQ674X7 775 aa17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 SLC9A4Q6AI14 798 aa17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 TIPARPQ7Z3E1 657 aaKnown RBP17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 TMC3Q7Z5M5 1100 aa17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 LRRTM4Q86VH4 590 aa17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 MYO18BQ8IUG5 2567 aa17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 TRAM1L1Q8N609 369 aa17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 TEFMQ96QE5 360 aaKnown RBP17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 TRIB3Q96RU7 358 aa17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 SLC25A18Q9H1K4 315 aa17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 GLOD4Q9HC38 313 aa17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 GEMIN8Q9NWZ8 242 aaKnown RBP17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 IL17BQ9UHF5 180 aa17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 PILRAQ9UKJ1 303 aa17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 SPO11Q9Y5K1 396 aa17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 ASH1LQ9NR48 2969 aaKnown RBP17.34■□□□□ 0.37
SHKBP1-223ENST00000600552 A6NCN8 305 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 AURKAO14965 403 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 KMOO15229 486 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 CBFA2T2O43439 604 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 SPOPO43791 374 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 RASSF9O75901 435 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 CDK14O94921 469 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 ZFXP17010 805 aaPredicted RBP17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 ZNF7P17097 686 aaPredicted RBP17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 CCR10P46092 362 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 EPHA4P54764 986 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 DRG2P55039 364 aaKnown RBP17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 POLE2P56282 527 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 NOMO1Q15155 1222 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 DEFB109BQ30KR1 87 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 MFSD7Q6UXD7 560 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 PLXDC1Q8IUK5 500 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 SLC25A41Q8N5S1 370 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 DNAJC7Q99615 494 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 ANP32EQ9BTT0 268 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 NHEJ1Q9H9Q4 299 aaPredicted RBP17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 MAGEE1Q9HCI5 957 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 RAD18Q9NS91 495 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 SLC30A1Q9Y6M5 507 aa17.33■□□□□ 0.36
SHKBP1-223ENST00000600552 A0A0A6YYK5 440 aaPredicted RBP17.32■□□□□ 0.36
SHKBP1-223ENST00000600552 SUV39H1O43463 412 aa17.32■□□□□ 0.36
SHKBP1-223ENST00000600552 NDST3O95803 873 aa17.32■□□□□ 0.36
SHKBP1-223ENST00000600552 MAP4P27816 1152 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-223ENST00000600552 SLC19A1P41440 591 aa17.32■□□□□ 0.36
SHKBP1-223ENST00000600552 ARHGAP25P42331 645 aa17.32■□□□□ 0.36
SHKBP1-223ENST00000600552 LEPRP48357 1165 aaKnown RBP17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms