RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 EID2BQ96D98 161 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 TEFMQ96QE5 360 aaKnown RBP9.68□□□□□ -0.86
VRK3-216ENST00000599342 FAM117AQ9C073 453 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 GLOD4Q9HC38 313 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 KLC4Q9NSK0 619 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 OCIAD1Q9NX40 245 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 PDP2Q9P2J9 529 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 NFKBIL1Q9UBC1 381 aaPredicted RBP9.68□□□□□ -0.86
VRK3-216ENST00000599342 CPNE7Q9UBL6 633 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 KLHL3Q9UH77 587 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 HYOU1Q9Y4L1 999 aa9.68□□□□□ -0.86
VRK3-216ENST00000599342 A6NCN8 305 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 LILRA5A6NI73 299 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 PDZK1P1A8MUH7 402 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 KMOO15229 486 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 MTSS1O43312 755 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 SLC28A2O43868 658 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 VEGFDO43915 354 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 RAD1O60671 282 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 CST8O60676 142 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 PMPCBO75439 489 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 ZIC2O95409 532 aaPredicted RBP9.67□□□□□ -0.86
VRK3-216ENST00000599342 VIPP01282 170 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 SFTPCP11686 197 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 BPIP17213 487 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 PTPN3P26045 913 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 UGT1A3P35503 534 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 CDKN2BP42772 138 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 CLCNKAP51800 687 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 NFATC3Q12968 1075 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 GTF2H3Q13889 308 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 PRKD1Q15139 912 aaPredicted RBP9.67□□□□□ -0.86
VRK3-216ENST00000599342 SEPT7Q16181 437 aaKnown RBP9.67□□□□□ -0.86
VRK3-216ENST00000599342 LINC00303Q3SY05 128 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 FAM182AQ5T1J6 154 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 ZNF648Q5T619 568 aaPredicted RBP9.67□□□□□ -0.86
VRK3-216ENST00000599342 ZDHHC20Q5W0Z9 365 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 ANKS6Q68DC2 871 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 CEACAM20Q6UY09 585 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 PRICKLE2Q7Z3G6 844 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 ADGRG6Q86SQ4 1221 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 LRRTM4Q86VH4 590 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 PLXDC1Q8IUK5 500 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 CCDC50Q8IVM0 306 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 GDAP1Q8TB36 358 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 P3H4Q92791 437 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 NKD1Q969G9 470 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 TADA1Q96BN2 335 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 TEKT5Q96M29 485 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 PLEKHG4BQ96PX9 1271 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 ZPBPQ9BS86 351 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 TBC1D10AQ9BXI6 508 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 PRDM8Q9NQV8 689 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 UBP1Q9NZI7 540 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 KLHL8Q9P2G9 620 aaPredicted RBP9.67□□□□□ -0.86
VRK3-216ENST00000599342 FAM153AQ9UHL3 310 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 DNAJC16Q9Y2G8 782 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.67□□□□□ -0.86
VRK3-216ENST00000599342 ADGRG1Q9Y653 693 aa9.67□□□□□ -0.86
VRK3-216ENST00000599342 CHUKO15111 745 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 MTX2O75431 263 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 CDK14O94921 469 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 FAM87AP0C7U9 286 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 PECAM1P16284 738 aaPredicted RBP9.66□□□□□ -0.86
VRK3-216ENST00000599342 ZNF7P17097 686 aaPredicted RBP9.66□□□□□ -0.86
VRK3-216ENST00000599342 AMD1P17707 334 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 VCLP18206 1134 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 WT1P19544 449 aaPredicted RBP9.66□□□□□ -0.86
VRK3-216ENST00000599342 NFKB1P19838 968 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 ARSDP51689 593 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 UBE2IP63279 158 aaKnown RBP9.66□□□□□ -0.86
VRK3-216ENST00000599342 CYP4F2P78329 520 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 MC2RQ01718 297 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 TCEAL1Q15170 157 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 LLGL1Q15334 1064 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 TBR1Q16650 682 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 TFDP3Q5H9I0 405 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 SPOCD1Q6ZMY3 1216 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 GLT6D1Q7Z4J2 308 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 ARHGAP22Q7Z5H3 698 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 ZC3H18Q86VM9 953 aaKnown RBP9.66□□□□□ -0.86
VRK3-216ENST00000599342 TRAPPC5Q8IUR0 188 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 NLGN4XQ8N0W4 816 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 BMPERQ8N8U9 685 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 EXD3Q8N9H8 876 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 NLGN4YQ8NFZ3 816 aaPredicted RBP9.66□□□□□ -0.86
VRK3-216ENST00000599342 KIAA1143Q96AT1 154 aaPredicted RBP9.66□□□□□ -0.86
VRK3-216ENST00000599342 HAUS1Q96CS2 278 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 RTP4Q96DX8 246 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 TTC25Q96NG3 672 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 VPS35Q96QK1 796 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 VAT1Q99536 393 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 CTRCQ99895 268 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 TIMM29Q9BSF4 260 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 FSD1LQ9BXM9 530 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 ZCCHC2Q9C0B9 1178 aaKnown RBP9.66□□□□□ -0.86
VRK3-216ENST00000599342 TRABDQ9H4I3 376 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 UCK1Q9HA47 277 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 BPIFA1Q9NP55 256 aa9.66□□□□□ -0.86
VRK3-216ENST00000599342 LUC7LQ9NQ29 371 aaKnown RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms