RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 ZNF398Q8TD17 642 aa11.76□□□□□ -0.53
LIG3-213ENST00000590630 STYXQ8WUJ0 223 aa11.76□□□□□ -0.53
LIG3-213ENST00000590630 DNAJC1Q96KC8 554 aaKnown RBP11.76□□□□□ -0.53
LIG3-213ENST00000590630 TTC25Q96NG3 672 aa11.76□□□□□ -0.53
LIG3-213ENST00000590630 RANBP9Q96S59 729 aa11.76□□□□□ -0.53
LIG3-213ENST00000590630 ASB8Q9H765 288 aa11.76□□□□□ -0.53
LIG3-213ENST00000590630 ARFGAP3Q9NP61 516 aa11.76□□□□□ -0.53
LIG3-213ENST00000590630 SPATS2LQ9NUQ6 558 aaKnown RBP11.76□□□□□ -0.53
LIG3-213ENST00000590630 GULP1Q9UBP9 304 aa11.76□□□□□ -0.53
LIG3-213ENST00000590630 ST14Q9Y5Y6 855 aa11.76□□□□□ -0.53
LIG3-213ENST00000590630 DMXL2Q8TDJ6 3036 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 CPED1A4D0V7 1026 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 B4DGG1 531 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 KMOO15229 486 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 GPR39O43194 453 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 NOBOXO60393 691 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 UGT1A9O60656 530 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 MTX2O75431 263 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 ECEL1O95672 775 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 TOP3BO95985 862 aaKnown RBP11.75□□□□□ -0.53
LIG3-213ENST00000590630 KRT14P02533 472 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 ACP5P13686 325 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 GLB1P16278 677 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 UGT1A6P19224 532 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 ITGALP20701 1170 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 UGT1A1P22309 533 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 UGT1A4P22310 534 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 ADRA1DP25100 572 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 UGT1A3P35503 534 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 UGT1A5P35504 534 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 DEKP35659 375 aaKnown RBP11.75□□□□□ -0.53
LIG3-213ENST00000590630 GRIA1P42261 906 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 MAGEA6P43360 314 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 SARNPP82979 210 aaKnown RBP11.75□□□□□ -0.53
LIG3-213ENST00000590630 GTF2H3Q13889 308 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 TRIP13Q15645 432 aaPredicted RBP11.75□□□□□ -0.53
LIG3-213ENST00000590630 GPR33Q49SQ1 333 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 KHDC1Q4VXA5 237 aaKnown RBP11.75□□□□□ -0.53
LIG3-213ENST00000590630 C14orf28Q4W4Y0 310 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 CERCAMQ5T4B2 595 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 ZNF648Q5T619 568 aaPredicted RBP11.75□□□□□ -0.53
LIG3-213ENST00000590630 GPRC6AQ5T6X5 926 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 NLRP9Q7RTR0 991 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 EFL1Q7Z2Z2 1120 aaKnown RBP11.75□□□□□ -0.53
LIG3-213ENST00000590630 SNX20Q7Z614 316 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 LRRTM4Q86VH4 590 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 CREG2Q8IUH2 290 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 ZDHHC1Q8WTX9 485 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 SLCO2A1Q92959 643 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 PEX13Q92968 403 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 ULK4Q96C45 1275 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 ZNF514Q96K75 400 aaPredicted RBP11.75□□□□□ -0.53
LIG3-213ENST00000590630 CAPZA3Q96KX2 299 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 TIMM29Q9BSF4 260 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 ABCG4Q9H172 646 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 UGT1A7Q9HAW7 530 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 UGT1A10Q9HAW8 530 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 UGT1A8Q9HAW9 530 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 RNF14Q9UBS8 474 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 RIMKLBQ9ULI2 386 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 MSRB2Q9Y3D2 182 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 NEU2Q9Y3R4 380 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 PRKAB1Q9Y478 270 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 PCYT1BQ9Y5K3 369 aaPredicted RBP11.75□□□□□ -0.53
LIG3-213ENST00000590630 SLC30A1Q9Y6M5 507 aa11.75□□□□□ -0.53
LIG3-213ENST00000590630 FANCGO15287 622 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 NUDT21O43809 227 aaKnown RBP11.74□□□□□ -0.53
LIG3-213ENST00000590630 OPA1O60313 960 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 RALBP11234 206 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 PNLIPP16233 465 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 AKT1P31749 480 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 MC4RP32245 332 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 PAFAH1B1P43034 410 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 VPS41P49754 854 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 CLCNKAP51800 687 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 ETF1P62495 437 aaKnown RBP11.74□□□□□ -0.53
LIG3-213ENST00000590630 TMPRSS15P98073 1019 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 INSM1Q01101 510 aaPredicted RBP11.74□□□□□ -0.53
LIG3-213ENST00000590630 HLTFQ14527 1009 aaKnown RBP eCLIP11.74□□□□□ -0.53
LIG3-213ENST00000590630 KCNJ11Q14654 390 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 CCDC38Q502W7 563 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 HES3Q5TGS1 186 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 ARMC3Q5W041 872 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 CRTC3Q6UUV7 619 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 C17orf82Q86X59 251 aaPredicted RBP11.74□□□□□ -0.53
LIG3-213ENST00000590630 TRAPPC5Q8IUR0 188 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 ZNF547Q8IVP9 402 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 CACTIN-AS1Q8N1I8 211 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 NXPE1Q8N323 547 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 C17orf53Q8N3J3 647 aaPredicted RBP11.74□□□□□ -0.53
LIG3-213ENST00000590630 PPHLN1Q8NEY8 458 aaKnown RBP11.74□□□□□ -0.53
LIG3-213ENST00000590630 WDR48Q8TAF3 677 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 MAPK15Q8TD08 544 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 HEXDCQ8WVB3 486 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 CDKN2AIPNLQ96HQ2 116 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 RUNDC3BQ96NL0 473 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 IL22Q9GZX6 179 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 BFARQ9NZS9 450 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 PCYOX1Q9UHG3 505 aa11.74□□□□□ -0.53
LIG3-213ENST00000590630 CRLS1Q9UJA2 301 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms