RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 DDA1Q9BW61 102 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 OR2AG1Q9H205 316 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 CARD9Q9H257 536 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 BPIFA1Q9NP55 256 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 AHCTF1Q8WYP5 2266 aa20.23■□□□□ 0.83
SHMT1-209ENST00000582653 COL6A6A6NMZ7 2263 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 hCG_1818297A0A087WSY0 165 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 WT1P19544 449 aaPredicted RBP20.22■□□□□ 0.83
SHMT1-209ENST00000582653 PPM1FP49593 454 aaPredicted RBP20.22■□□□□ 0.83
SHMT1-209ENST00000582653 HHEXQ03014 270 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 NFATC2Q13469 925 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 SLC14A2Q15849 920 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 ZNF569Q5MCW4 686 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 CCDC70Q6NSX1 233 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 ADGRG6Q86SQ4 1221 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 CCDC50Q8IVM0 306 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 KATNAL2Q8IYT4 538 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 RCOR2Q8IZ40 523 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 TRAM1L1Q8N609 369 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 ART4Q93070 314 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 ARHGAP9Q9BRR9 750 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 ZSCAN5AQ9BUG6 496 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 HEMGNQ9BXL5 484 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 TRIM39Q9HCM9 518 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 OCIAD1Q9NX40 245 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 SLC39A1Q9NY26 324 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 B3GALT1Q9Y5Z6 326 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 ADGRG1Q9Y653 693 aa20.22■□□□□ 0.83
SHMT1-209ENST00000582653 A6NCN8 305 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 OR5K4A6NMS3 321 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 DUX1O43812 170 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 MTX2O75431 263 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 SLC2A4P14672 509 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 UGT1A3P35503 534 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 CHRNA4P43681 627 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 CLCNKAP51800 687 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 DCDC1P59894 354 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 SPA17Q15506 151 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 DCAF12Q5T6F0 453 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 CRTC3Q6UUV7 619 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 KDELC1Q6UW63 502 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 PID1Q7Z2X4 250 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 ARHGAP22Q7Z5H3 698 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 SLC9B2Q86UD5 537 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 CCDC170Q8IYT3 715 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 ZNF567Q8N184 647 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 SLC25A41Q8N5S1 370 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 JPH3Q8WXH2 748 aaPredicted RBP20.21■□□□□ 0.83
SHMT1-209ENST00000582653 GLYATL1Q969I3 302 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 PMEPA1Q969W9 287 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 HERPUD2Q9BSE4 406 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 LDHAL6BQ9BYZ2 381 aaPredicted RBP20.21■□□□□ 0.83
SHMT1-209ENST00000582653 STN1Q9H668 368 aaKnown RBP20.21■□□□□ 0.83
SHMT1-209ENST00000582653 C10orf88Q9H8K7 445 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 PRDM8Q9NQV8 689 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 RAD18Q9NS91 495 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 KLHL8Q9P2G9 620 aaPredicted RBP20.21■□□□□ 0.83
SHMT1-209ENST00000582653 SLC23A2Q9UGH3 650 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 FAM153AQ9UHL3 310 aa20.21■□□□□ 0.83
SHMT1-209ENST00000582653 KIR2DS5A0A0G2JLQ3 304 aa20.2■□□□□ 0.82
SHMT1-209ENST00000582653 A0A0G2JNG1 304 aa20.2■□□□□ 0.82
SHMT1-209ENST00000582653 LOC285095A0A1B0GVY8 99 aa20.2■□□□□ 0.82
SHMT1-209ENST00000582653 RCCD1A6NED2 376 aa20.2■□□□□ 0.82
SHMT1-209ENST00000582653 KIR2DS3K7RE56 304 aa20.2■□□□□ 0.82
SHMT1-209ENST00000582653 SFTPCP11686 197 aa20.2■□□□□ 0.82
SHMT1-209ENST00000582653 F3P13726 295 aa20.2■□□□□ 0.82
SHMT1-209ENST00000582653 ATP1A2P50993 1020 aa20.2■□□□□ 0.82
SHMT1-209ENST00000582653 WNT3AP56704 352 aa20.2■□□□□ 0.82
SHMT1-209ENST00000582653 KIR2DS5Q14953 304 aa20.2■□□□□ 0.82
SHMT1-209ENST00000582653 TBR1Q16650 682 aa20.2■□□□□ 0.82
SHMT1-209ENST00000582653 PLA2G4EQ3MJ16 856 aa20.2■□□□□ 0.82
SHMT1-209ENST00000582653 KHDC1Q4VXA5 237 aaKnown RBP20.2■□□□□ 0.82
SHMT1-209ENST00000582653 DAAM2Q86T65 1068 aa20.2■□□□□ 0.82
SHMT1-209ENST00000582653 BMPERQ8N8U9 685 aa20.2■□□□□ 0.82
SHMT1-209ENST00000582653 OXNAD1Q96HP4 312 aaPredicted RBP20.2■□□□□ 0.82
SHMT1-209ENST00000582653 SPRY4Q9C004 299 aa20.2■□□□□ 0.82
SHMT1-209ENST00000582653 ZMYND15Q9H091 742 aa20.2■□□□□ 0.82
SHMT1-209ENST00000582653 KLC4Q9NSK0 619 aa20.2■□□□□ 0.82
SHMT1-209ENST00000582653 TMPRSS11EQ9UL52 423 aa20.2■□□□□ 0.82
SHMT1-209ENST00000582653 ZFC3H1O60293 1989 aaKnown RBP20.19■□□□□ 0.82
SHMT1-209ENST00000582653 PIEZO2Q9H5I5 2752 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 SOWAHDA6NJG2 315 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 EFCAB7A8K855 629 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 A8MU76 341 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 GPR89AB7ZAQ6 455 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 GPR89BP0CG08 455 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 ITGB6P18564 788 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 CYLC1P35663 651 aaPredicted RBP20.19■□□□□ 0.82
SHMT1-209ENST00000582653 ZNF75DP51815 510 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 EPHA4P54764 986 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 RAB15P59190 212 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 CYP4F2P78329 520 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 SIRPB2Q5JXA9 342 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 SNAP47Q5SQN1 464 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 PDPK2PQ6A1A2 396 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 C11orf63Q6NUN7 778 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 PHYKPLQ8IUZ5 450 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 IL22RA1Q8N6P7 574 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 HTR3CQ8WXA8 447 aa20.19■□□□□ 0.82
SHMT1-209ENST00000582653 NCSTNQ92542 709 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms