RNA–Protein interactions for RNA: ENST00000578995.5

SMARCE1-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 2

Gene SMARCE1, Length 534 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-215ENST00000578995 LDB2O43679 373 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 USP12O75317 370 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 PMPCBO75439 489 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 RNASEH2AO75792 299 aaKnown RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 ZNF189O75820 626 aaPredicted RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 NDST3O95803 873 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 AGTP01019 485 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 C1QAP02745 245 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 FUCA1P04066 466 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 SERPINF2P08697 491 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 PIRTP0C851 137 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 GIMD1P0DJR0 217 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 C6P13671 934 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 CTPS1P17812 591 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 TPSB2P20231 275 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 ITPKAP23677 461 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 ARNTP27540 789 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 ECHS1P30084 290 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 OXTRP30559 389 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 STIP1P31948 543 aaKnown RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 VIPR1P32241 457 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 CETN2P41208 172 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 GDF5P43026 501 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 RECQLP46063 649 aaPredicted RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 SUOXP51687 545 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 ZNF140P52738 457 aaPredicted RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 HK2P52789 917 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 PFN3P60673 137 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 XIAPP98170 497 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 ACVR1Q04771 509 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 CDK18Q07002 472 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 C2orf54Q08AI8 447 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 SPARCL1Q14515 664 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 PTPRCAPQ14761 206 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 SHBQ15464 509 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 TRADDQ15628 312 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 TPSAB1Q15661 275 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 SLC1A5Q15758 541 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 SWI5Q1ZZU3 235 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 WSCD2Q2TBF2 565 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 TTC31Q49AM3 519 aaPredicted RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 USP39Q53GS9 565 aaKnown RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 HENMT1Q5T8I9 393 aaKnown RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 ARMC12Q5T9G4 340 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 RNASEH2BQ5TBB1 312 aaKnown RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 FAM46CQ5VWP2 391 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 LRRC66Q68CR7 880 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 DUPD1Q68J44 220 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 KIAA1161Q6NSJ0 714 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 DARS2Q6PI48 645 aaKnown RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 CCDC137Q6PK04 289 aaKnown RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 LAYNQ6UX15 382 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 ZDHHC24Q6UX98 284 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 SLC36A4Q6YBV0 504 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 PID1Q7Z2X4 250 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 TMC3Q7Z5M5 1100 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 FAM124AQ86V42 546 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 CAND1Q86VP6 1230 aaKnown RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 SPATS2Q86XZ4 545 aaKnown RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 ZNF354CQ86Y25 554 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 JAMLQ86YT9 394 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 CCNJLQ8IV13 435 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 RAVER1Q8IY67 606 aaKnown RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 TMEFF1Q8IYR6 380 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 DEFB119Q8N690 84 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 NOA1Q8NC60 698 aaKnown RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 PLA2G15Q8NCC3 412 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 DENND6BQ8NEG7 585 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 LPCAT1Q8NF37 534 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 ATL2Q8NHH9 583 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 MAIP1Q8WWC4 291 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 MAGOHBQ96A72 148 aaKnown RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 CCDC97Q96F63 343 aaPredicted RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 DTD2Q96FN9 168 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 LOXL4Q96JB6 756 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 CAPZA3Q96KX2 299 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 SLC6A18Q96N87 628 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 LENG8Q96PV6 779 aaPredicted RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 AGAP2Q99490 1192 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 C19orf43Q9BQ61 176 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 APOL2Q9BQE5 337 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 TRIM51Q9BSJ1 452 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 FICDQ9BVA6 458 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 BTBD1Q9H0C5 482 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 CCDC86Q9H6F5 360 aaKnown RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 MAGEE1Q9HCI5 957 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 FZD3Q9NPG1 666 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 MBNL1Q9NR56 388 aaKnown RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 LATS2Q9NRM7 1088 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 RXFP3Q9NSD7 469 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 IL17CQ9P0M4 197 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 SEPT10Q9P0V9 454 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 BCCIPQ9P287 314 aaKnown RBP eCLIP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 KLHL8Q9P2G9 620 aaPredicted RBP3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 RNF14Q9UBS8 474 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 FAM153AQ9UHL3 310 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 RSPH14Q9UHP6 348 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 PHTF1Q9UMS5 762 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 CA5BQ9Y2D0 317 aa3.78□□□□□ -1.8
SMARCE1-215ENST00000578995 COQ6Q9Y2Z9 468 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms