RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 ZSCAN5DPP0CG00 497 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 HADHAP40939 763 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 TERF1P54274 439 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 ST3GAL2Q16842 350 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 LDLRAP1Q5SW96 308 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 CERCAMQ5T4B2 595 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 DENND5AQ6IQ26 1287 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 GLIS1Q8NBF1 620 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 OR52K1Q8NGK4 314 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 GFM1Q96RP9 751 aaKnown RBP19.26■□□□□ 0.67
SS18-209ENST00000578595 NAP1L3Q99457 506 aaPredicted RBP19.26■□□□□ 0.67
SS18-209ENST00000578595 AP1M1Q9BXS5 423 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 HOMER3Q9NSC5 361 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 KLC4Q9NSK0 619 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 APPL1Q9UKG1 709 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 AK5Q9Y6K8 562 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 RNF215Q9Y6U7 377 aa19.26■□□□□ 0.67
SS18-209ENST00000578595 TRABD2BA6NFA1 517 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 USP27XA6NNY8 438 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 ERI2A8K979 691 aaKnown RBP19.25■□□□□ 0.67
SS18-209ENST00000578595 PGRMC1O00264 195 aaKnown RBP19.25■□□□□ 0.67
SS18-209ENST00000578595 CCL22O00626 93 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 KMOO15229 486 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 VEGFDO43915 354 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 PROS1P07225 676 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 GLB1P16278 677 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 MSH3P20585 1137 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 ITGALP20701 1170 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 PBLDP30039 288 aaPredicted RBP19.25■□□□□ 0.67
SS18-209ENST00000578595 VPS41P49754 854 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 CDH17Q12864 832 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 KHDC1Q4VXA5 237 aaKnown RBP19.25■□□□□ 0.67
SS18-209ENST00000578595 GPRC6AQ5T6X5 926 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 OGFOD3Q6PK18 319 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 RBM44Q6ZP01 1051 aaKnown RBP19.25■□□□□ 0.67
SS18-209ENST00000578595 CCNJLQ8IV13 435 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 ZNF398Q8TD17 642 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 NXPE2Q96DL1 559 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 DNAJC1Q96KC8 554 aaKnown RBP19.25■□□□□ 0.67
SS18-209ENST00000578595 OSBPL9Q96SU4 736 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 STN1Q9H668 368 aaKnown RBP19.25■□□□□ 0.67
SS18-209ENST00000578595 CCDC86Q9H6F5 360 aaKnown RBP19.25■□□□□ 0.67
SS18-209ENST00000578595 ARNT2Q9HBZ2 717 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 RABGEF1Q9UJ41 708 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 PYCARDQ9ULZ3 195 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 ST14Q9Y5Y6 855 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 SLC30A1Q9Y6M5 507 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 APC2O95996 2303 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 FRYQ5TBA9 3013 aa19.25■□□□□ 0.67
SS18-209ENST00000578595 GPR89AB7ZAQ6 455 aa19.24■□□□□ 0.67
SS18-209ENST00000578595 SRP72O76094 671 aaKnown RBP19.24■□□□□ 0.67
SS18-209ENST00000578595 GPR89BP0CG08 455 aa19.24■□□□□ 0.67
SS18-209ENST00000578595 ALDH4A1P30038 563 aa19.24■□□□□ 0.67
SS18-209ENST00000578595 RPL22P35268 128 aaKnown RBP19.24■□□□□ 0.67
SS18-209ENST00000578595 ZNF140P52738 457 aaPredicted RBP19.24■□□□□ 0.67
SS18-209ENST00000578595 CCL7P80098 99 aa19.24■□□□□ 0.67
SS18-209ENST00000578595 CCDC173Q0VFZ6 552 aa19.24■□□□□ 0.67
SS18-209ENST00000578595 TMEM115Q12893 351 aaPredicted RBP19.24■□□□□ 0.67
SS18-209ENST00000578595 HLTFQ14527 1009 aaKnown RBP eCLIP19.24■□□□□ 0.67
SS18-209ENST00000578595 TRIP13Q15645 432 aaPredicted RBP19.24■□□□□ 0.67
SS18-209ENST00000578595 SEPT7Q16181 437 aaKnown RBP19.24■□□□□ 0.67
SS18-209ENST00000578595 CCDC38Q502W7 563 aa19.24■□□□□ 0.67
SS18-209ENST00000578595 ZRANB3Q5FWF4 1079 aa19.24■□□□□ 0.67
SS18-209ENST00000578595 DET1Q7L5Y6 550 aa19.24■□□□□ 0.67
SS18-209ENST00000578595 KLHDC8BQ8IXV7 354 aa19.24■□□□□ 0.67
SS18-209ENST00000578595 NAGSQ8N159 534 aa19.24■□□□□ 0.67
SS18-209ENST00000578595 ARL14Q8N4G2 192 aa19.24■□□□□ 0.67
SS18-209ENST00000578595 DCBLD1Q8N8Z6 715 aa19.24■□□□□ 0.67
SS18-209ENST00000578595 PRELID2Q8N945 189 aa19.24■□□□□ 0.67
SS18-209ENST00000578595 WDR48Q8TAF3 677 aa19.24■□□□□ 0.67
SS18-209ENST00000578595 MDM1Q8TC05 714 aa19.24■□□□□ 0.67
SS18-209ENST00000578595 MAGOHBQ96A72 148 aaKnown RBP19.24■□□□□ 0.67
SS18-209ENST00000578595 SMARCAL1Q9NZC9 954 aa19.24■□□□□ 0.67
SS18-209ENST00000578595 TMPRSS11EQ9UL52 423 aa19.24■□□□□ 0.67
SS18-209ENST00000578595 DRG1Q9Y295 367 aaKnown RBP19.24■□□□□ 0.67
SS18-209ENST00000578595 PCDHB1Q9Y5F3 818 aa19.24■□□□□ 0.67
SS18-209ENST00000578595 USP24Q9UPU5 2620 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 GOLGA6L10A0A0M3HER8 536 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 TMEM8BA6NDV4 472 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 OR2AG2A6NM03 316 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 PDZK1P1A8MUH7 402 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 CASC3O15234 703 aaKnown RBP19.23■□□□□ 0.67
SS18-209ENST00000578595 ZW10O43264 779 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 LDB2O43679 373 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 NUDT21O43809 227 aaKnown RBP19.23■□□□□ 0.67
SS18-209ENST00000578595 SLC2A4P14672 509 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 VCLP18206 1134 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 MC4RP32245 332 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 GNG11P61952 73 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 SEMA5AQ13591 1074 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 KCTD19Q17RG1 926 aaPredicted RBP19.23■□□□□ 0.67
SS18-209ENST00000578595 AMZ1Q400G9 498 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 MAP9Q49MG5 647 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 DRICH1Q6PGQ1 229 aaPredicted RBP19.23■□□□□ 0.67
SS18-209ENST00000578595 FOXR1Q6PIV2 292 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 DDHD1Q8NEL9 900 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 DCUN1D1Q96GG9 259 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 TMEM121BQ9BXQ6 578 aaPredicted RBP19.23■□□□□ 0.67
SS18-209ENST00000578595 LRRN3Q9H3W5 708 aa19.23■□□□□ 0.67
SS18-209ENST00000578595 FAM96AQ9H5X1 160 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms