RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 TNFSF15O95150 251 aa20.05■□□□□ 0.8
CLK3-225ENST00000569063 PTMAP06454 111 aaKnown RBP20.05■□□□□ 0.8
CLK3-225ENST00000569063 ITGA2BP08514 1039 aa20.05■□□□□ 0.8
CLK3-225ENST00000569063 PSMB4P28070 264 aa20.05■□□□□ 0.8
CLK3-225ENST00000569063 CD1CP29017 333 aa20.05■□□□□ 0.8
CLK3-225ENST00000569063 SQSTM1Q13501 440 aa20.05■□□□□ 0.8
CLK3-225ENST00000569063 ATP13A5Q4VNC0 1218 aa20.05■□□□□ 0.8
CLK3-225ENST00000569063 FOXR1Q6PIV2 292 aa20.05■□□□□ 0.8
CLK3-225ENST00000569063 CLEC14AQ86T13 490 aa20.05■□□□□ 0.8
CLK3-225ENST00000569063 FBXO39Q8N4B4 442 aa20.05■□□□□ 0.8
CLK3-225ENST00000569063 CCDC110Q8TBZ0 833 aa20.05■□□□□ 0.8
CLK3-225ENST00000569063 SLC37A2Q8TED4 501 aa20.05■□□□□ 0.8
CLK3-225ENST00000569063 FICDQ9BVA6 458 aa20.05■□□□□ 0.8
CLK3-225ENST00000569063 KCNK6Q9Y257 313 aa20.05■□□□□ 0.8
CLK3-225ENST00000569063 PKP3Q9Y446 797 aa20.05■□□□□ 0.8
CLK3-225ENST00000569063 C5orf60A6NFR6 353 aa20.04■□□□□ 0.8
CLK3-225ENST00000569063 KMOO15229 486 aa20.04■□□□□ 0.8
CLK3-225ENST00000569063 KRT86O43790 486 aa20.04■□□□□ 0.8
CLK3-225ENST00000569063 SPAM1P38567 509 aa20.04■□□□□ 0.8
CLK3-225ENST00000569063 CCDC173Q0VFZ6 552 aa20.04■□□□□ 0.8
CLK3-225ENST00000569063 AMZ1Q400G9 498 aa20.04■□□□□ 0.8
CLK3-225ENST00000569063 MAP9Q49MG5 647 aa20.04■□□□□ 0.8
CLK3-225ENST00000569063 CHCHD2P9Q5T1J5 151 aaPredicted RBP20.04■□□□□ 0.8
CLK3-225ENST00000569063 PDZD3Q86UT5 571 aa20.04■□□□□ 0.8
CLK3-225ENST00000569063 KLHDC8BQ8IXV7 354 aa20.04■□□□□ 0.8
CLK3-225ENST00000569063 BRSK1Q8TDC3 778 aa20.04■□□□□ 0.8
CLK3-225ENST00000569063 RDH14Q9HBH5 336 aa20.04■□□□□ 0.8
CLK3-225ENST00000569063 TRBV23OR9-2A0A075B6M9 112 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 IGHV1OR21-1A0A087WYE8 117 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 ARHGAP6O43182 974 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 MTX2O75431 263 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 CDK14O94921 469 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 F3P13726 295 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 SLC2A4P14672 509 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 UGT1A5P35504 534 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 TLE3Q04726 772 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 CHRNA6Q15825 494 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 KHDC1Q4VXA5 237 aaKnown RBP20.03■□□□□ 0.8
CLK3-225ENST00000569063 USP53Q70EK8 1073 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 LRRTM4Q86VH4 590 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 ZNF547Q8IVP9 402 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 SPACA3Q8IXA5 215 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 CCDC112Q8NEF3 446 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 SEMA6CQ9H3T2 930 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 SARS2Q9NP81 518 aaKnown RBP20.03■□□□□ 0.8
CLK3-225ENST00000569063 KCNK4Q9NYG8 393 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 GUCA1BQ9UMX6 200 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 CHD6Q8TD26 2715 aa20.03■□□□□ 0.8
CLK3-225ENST00000569063 ZFC3H1O60293 1989 aaKnown RBP20.03■□□□□ 0.8
CLK3-225ENST00000569063 KIR2DS5A0A0G2JLQ3 304 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 A0A0G2JNG1 304 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 GLYATL1P3A0A0U1RQE8 302 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 OR5K4A6NMS3 321 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 KIR2DS3K7RE56 304 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 ZNF7P17097 686 aaPredicted RBP20.02■□□□□ 0.8
CLK3-225ENST00000569063 GPLD1P80108 840 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 HHEXQ03014 270 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 TMEM115Q12893 351 aaPredicted RBP20.02■□□□□ 0.8
CLK3-225ENST00000569063 MSLNQ13421 630 aaPredicted RBP20.02■□□□□ 0.8
CLK3-225ENST00000569063 KIR2DS5Q14953 304 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 TAF1AQ15573 450 aaPredicted RBP20.02■□□□□ 0.8
CLK3-225ENST00000569063 PARP6Q2NL67 630 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 CRTC3Q6UUV7 619 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 ZNF574Q6ZN55 896 aaPredicted RBP20.02■□□□□ 0.8
CLK3-225ENST00000569063 FAM71DQ8N9W8 422 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 SLC35B2Q8TB61 432 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 CCDC97Q96F63 343 aaPredicted RBP20.02■□□□□ 0.8
CLK3-225ENST00000569063 CMKLR1Q99788 373 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 NUDT22Q9BRQ3 303 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 TIMM29Q9BSF4 260 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 DPH1Q9BZG8 443 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 ARNT2Q9HBZ2 717 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 PRDM8Q9NQV8 689 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 KLC4Q9NSK0 619 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 SLC23A2Q9UGH3 650 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 R3HDM2Q9Y2K5 976 aaKnown RBP20.02■□□□□ 0.8
CLK3-225ENST00000569063 LOXL2Q9Y4K0 774 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 PCDHGA7Q9Y5G6 932 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 ARL5AQ9Y689 179 aa20.02■□□□□ 0.8
CLK3-225ENST00000569063 NBEAQ8NFP9 2946 aa20.02■□□□□ 0.79
CLK3-225ENST00000569063 TCRBV7S2A1N4TA0A589 114 aa20.01■□□□□ 0.79
CLK3-225ENST00000569063 PRR19A6NJB7 356 aa20.01■□□□□ 0.79
CLK3-225ENST00000569063 C2orf81A6NN90 581 aa20.01■□□□□ 0.79
CLK3-225ENST00000569063 GAPDHSO14556 408 aaPredicted RBP20.01■□□□□ 0.79
CLK3-225ENST00000569063 STX7O15400 261 aaKnown RBP20.01■□□□□ 0.79
CLK3-225ENST00000569063 BUD23O43709 281 aaKnown RBP20.01■□□□□ 0.79
CLK3-225ENST00000569063 SNX2O60749 519 aa20.01■□□□□ 0.79
CLK3-225ENST00000569063 LPOP22079 712 aaPredicted RBP20.01■□□□□ 0.79
CLK3-225ENST00000569063 OLIG2Q13516 323 aa20.01■□□□□ 0.79
CLK3-225ENST00000569063 ITGA9Q13797 1035 aa20.01■□□□□ 0.79
CLK3-225ENST00000569063 LDLRAP1Q5SW96 308 aa20.01■□□□□ 0.79
CLK3-225ENST00000569063 PHF19Q5T6S3 580 aa20.01■□□□□ 0.79
CLK3-225ENST00000569063 DENND5AQ6IQ26 1287 aa20.01■□□□□ 0.79
CLK3-225ENST00000569063 FAM151BQ6UXP7 276 aa20.01■□□□□ 0.79
CLK3-225ENST00000569063 SLC9B2Q86UD5 537 aa20.01■□□□□ 0.79
CLK3-225ENST00000569063 AVL9Q8NBF6 648 aa20.01■□□□□ 0.79
CLK3-225ENST00000569063 DDHD1Q8NEL9 900 aa20.01■□□□□ 0.79
CLK3-225ENST00000569063 OR4D9Q8NGE8 314 aa20.01■□□□□ 0.79
CLK3-225ENST00000569063 GDAP1Q8TB36 358 aa20.01■□□□□ 0.79
CLK3-225ENST00000569063 KCNE4Q8WWG9 221 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms