RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 PTK6Q13882 451 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 PTPRCAPQ14761 206 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 ALG11Q2TAA5 492 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 TAF1BQ53T94 588 aaPredicted RBP17.09■□□□□ 0.33
CLN3-217ENST00000565354 CERCAMQ5T4B2 595 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 TRIM74Q86UV6 250 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 PHYKPLQ8IUZ5 450 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 RBFAQ8N0V3 343 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 PPHLN1Q8NEY8 458 aaKnown RBP17.09■□□□□ 0.33
CLN3-217ENST00000565354 OR13C4Q8NGS5 318 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 LMX1AQ8TE12 382 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 SLCO2A1Q92959 643 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 WBP1Q96G27 269 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 CYP4F12Q9HCS2 524 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 BFARQ9NZS9 450 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 APPL1Q9UKG1 709 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 KCTD3Q9Y597 815 aa17.09■□□□□ 0.33
CLN3-217ENST00000565354 PRSS38A1L453 326 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 CCDC78A2IDD5 438 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 NEMP2A6NFY4 417 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 AQP9O43315 295 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 ALPPL2P10696 532 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 DGKAP23743 735 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 HK3P52790 923 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 C2orf54Q08AI8 447 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 DHX34Q14147 1143 aaKnown RBP17.08■□□□□ 0.32
CLN3-217ENST00000565354 KCNJ11Q14654 390 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 CCDC38Q502W7 563 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 PRRT3Q5FWE3 981 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 MARK2Q7KZI7 788 aaKnown RBP17.08■□□□□ 0.32
CLN3-217ENST00000565354 PCGF5Q86SE9 256 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 SPATA4Q8NEY3 305 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 KIF18AQ8NI77 898 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 STYXQ8WUJ0 223 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 OR1E3Q8WZA6 343 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 GLYATL1Q969I3 302 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 PDXPQ96GD0 296 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 DNAJC1Q96KC8 554 aaKnown RBP17.08■□□□□ 0.32
CLN3-217ENST00000565354 CARS2Q9HA77 564 aaKnown RBP17.08■□□□□ 0.32
CLN3-217ENST00000565354 FGF22Q9HCT0 170 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 IL26Q9NPH9 171 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 MRPL40Q9NQ50 206 aaKnown RBP17.08■□□□□ 0.32
CLN3-217ENST00000565354 FKBPLQ9UIM3 349 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 CDC23Q9UJX2 597 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 TMEM98Q9Y2Y6 226 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 NEU2Q9Y3R4 380 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 SLC30A1Q9Y6M5 507 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 SCN8AQ9UQD0 1980 aa17.08■□□□□ 0.32
CLN3-217ENST00000565354 SCAMP1O15126 338 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 FFAR2O15552 330 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 LDB2O43679 373 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 PRAMEF1O95521 474 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 ACP1P24666 158 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 ADRA1DP25100 572 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 PTGIRP43119 386 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 GNPDA1P46926 289 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 NPY2RP49146 381 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 ZNF140P52738 457 aaPredicted RBP17.07■□□□□ 0.32
CLN3-217ENST00000565354 RHDQ02161 417 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 MSLNQ13421 630 aaPredicted RBP17.07■□□□□ 0.32
CLN3-217ENST00000565354 C1orf61Q13536 156 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 GTF2H3Q13889 308 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 ELOCQ15369 112 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 TCEA2Q15560 299 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 CHRNA6Q15825 494 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 SKIDA1Q1XH10 827 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 LRRC8BQ6P9F7 803 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 JAMLQ86YT9 394 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 PPIL6Q8IXY8 311 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 FSTL5Q8N475 847 aaPredicted RBP17.07■□□□□ 0.32
CLN3-217ENST00000565354 ZNF248Q8NDW4 579 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 ZNF548Q8NEK5 533 aaPredicted RBP17.07■□□□□ 0.32
CLN3-217ENST00000565354 CPT1BQ92523 772 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 COX14Q96I36 57 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 FRMD8Q9BZ67 464 aaPredicted RBP17.07■□□□□ 0.32
CLN3-217ENST00000565354 TCEAL2Q9H3H9 227 aaPredicted RBP17.07■□□□□ 0.32
CLN3-217ENST00000565354 ASB8Q9H765 288 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 KLF15Q9UIH9 416 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 SUFUQ9UMX1 484 aa17.07■□□□□ 0.32
CLN3-217ENST00000565354 TDRD6O60522 2096 aaKnown RBP17.07■□□□□ 0.32
CLN3-217ENST00000565354 TCRBV7S3A2A0A539 114 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 GOLGA8MH3BSY2 632 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 DNALI1O14645 258 aaPredicted RBP17.06■□□□□ 0.32
CLN3-217ENST00000565354 TTI1O43156 1089 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 SRP72O76094 671 aaKnown RBP17.06■□□□□ 0.32
CLN3-217ENST00000565354 CEACAM5P06731 702 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 ANXA6P08133 673 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 ITGALP20701 1170 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 POLD2P49005 469 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 UCNP55089 124 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 PCBP4P57723 403 aaKnown RBP17.06■□□□□ 0.32
CLN3-217ENST00000565354 TMPRSS3P57727 454 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 E2F1Q01094 437 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 WHAMMP3Q1A5X7 153 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 PROX2Q3B8N5 592 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 ATP13A5Q4VNC0 1218 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 ZRANB3Q5FWF4 1079 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 PCID2Q5JVF3 399 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 BROXQ5VW32 411 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 ANKRD22Q5VYY1 191 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms