RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 SLC25A14O95258 325 aaPredicted RBP16.9■□□□□ 0.3
CLN3-216ENST00000565316 TPM3P06753 285 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 ANKRD34CP0C6C1 535 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 ZFXP17010 805 aaPredicted RBP16.9■□□□□ 0.3
CLN3-216ENST00000565316 XRCC1P18887 633 aaPredicted RBP16.9■□□□□ 0.3
CLN3-216ENST00000565316 MAP4P27816 1152 aaKnown RBP16.9■□□□□ 0.3
CLN3-216ENST00000565316 CDK18Q07002 472 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 AP1B1Q10567 949 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 SNAP47Q5SQN1 464 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 FAM182AQ5T1J6 154 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 ZNF648Q5T619 568 aaPredicted RBP16.9■□□□□ 0.3
CLN3-216ENST00000565316 BORAQ6PGQ7 559 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 CEACAM20Q6UY09 585 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 ADGRG6Q86SQ4 1221 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 PHYKPLQ8IUZ5 450 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 GLYATL1Q969I3 302 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 SLC45A3Q96JT2 553 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 AGAP3Q96P47 875 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 PLEKHG4BQ96PX9 1271 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 CEP41Q9BYV8 373 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 ZMYND15Q9H091 742 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 SLC25A18Q9H1K4 315 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 KLC4Q9NSK0 619 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 SHOC2Q9UQ13 582 aa16.9■□□□□ 0.3
CLN3-216ENST00000565316 TMEM184BQ9Y519 407 aaPredicted RBP16.9■□□□□ 0.3
CLN3-216ENST00000565316 MN1Q10571 1320 aaPredicted RBP16.89■□□□□ 0.29
CLN3-216ENST00000565316 PPP1R12AO14974 1030 aaPredicted RBP16.89■□□□□ 0.29
CLN3-216ENST00000565316 AKR1B10O60218 316 aa16.89■□□□□ 0.29
CLN3-216ENST00000565316 PPFIA2O75334 1257 aa16.89■□□□□ 0.29
CLN3-216ENST00000565316 PIRTP0C851 137 aa16.89■□□□□ 0.29
CLN3-216ENST00000565316 CSRP3P50461 194 aa16.89■□□□□ 0.29
CLN3-216ENST00000565316 TRIM14Q14142 442 aa16.89■□□□□ 0.29
CLN3-216ENST00000565316 NPNTQ6UXI9 565 aa16.89■□□□□ 0.29
CLN3-216ENST00000565316 TIPARPQ7Z3E1 657 aaKnown RBP16.89■□□□□ 0.29
CLN3-216ENST00000565316 KDELC2Q7Z4H8 507 aa16.89■□□□□ 0.29
CLN3-216ENST00000565316 NLGN4XQ8N0W4 816 aa16.89■□□□□ 0.29
CLN3-216ENST00000565316 NLGN4YQ8NFZ3 816 aaPredicted RBP16.89■□□□□ 0.29
CLN3-216ENST00000565316 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.89■□□□□ 0.29
CLN3-216ENST00000565316 CTRCQ99895 268 aa16.89■□□□□ 0.29
CLN3-216ENST00000565316 TBC1D10AQ9BXI6 508 aa16.89■□□□□ 0.29
CLN3-216ENST00000565316 MAK16Q9BXY0 300 aaKnown RBP16.89■□□□□ 0.29
CLN3-216ENST00000565316 DEF6Q9H4E7 631 aa16.89■□□□□ 0.29
CLN3-216ENST00000565316 GLOD4Q9HC38 313 aa16.89■□□□□ 0.29
CLN3-216ENST00000565316 ARFGAP3Q9NP61 516 aa16.89■□□□□ 0.29
CLN3-216ENST00000565316 OGFRQ9NZT2 677 aa16.89■□□□□ 0.29
CLN3-216ENST00000565316 SCHIP1Q9P0W5 487 aaPredicted RBP16.89■□□□□ 0.29
CLN3-216ENST00000565316 SLC23A2Q9UGH3 650 aa16.89■□□□□ 0.29
CLN3-216ENST00000565316 IL17BQ9UHF5 180 aa16.89■□□□□ 0.29
CLN3-216ENST00000565316 ZNF711Q9Y462 761 aa16.89■□□□□ 0.29
CLN3-216ENST00000565316 ZNF891A8MT65 544 aaPredicted RBP16.88■□□□□ 0.29
CLN3-216ENST00000565316 NDST3O95803 873 aa16.88■□□□□ 0.29
CLN3-216ENST00000565316 C9P02748 559 aa16.88■□□□□ 0.29
CLN3-216ENST00000565316 BPIP17213 487 aa16.88■□□□□ 0.29
CLN3-216ENST00000565316 PPM1FP49593 454 aaPredicted RBP16.88■□□□□ 0.29
CLN3-216ENST00000565316 NFKB2Q00653 900 aa16.88■□□□□ 0.29
CLN3-216ENST00000565316 TCEAL1Q15170 157 aa16.88■□□□□ 0.29
CLN3-216ENST00000565316 TEX44Q53QW1 395 aa16.88■□□□□ 0.29
CLN3-216ENST00000565316 ALS2CLQ60I27 953 aa16.88■□□□□ 0.29
CLN3-216ENST00000565316 ATG14Q6ZNE5 492 aa16.88■□□□□ 0.29
CLN3-216ENST00000565316 TMEM26Q6ZUK4 368 aa16.88■□□□□ 0.29
CLN3-216ENST00000565316 PLXDC1Q8IUK5 500 aa16.88■□□□□ 0.29
CLN3-216ENST00000565316 RHOT2Q8IXI1 618 aa16.88■□□□□ 0.29
CLN3-216ENST00000565316 CATSPER2Q96P56 530 aa16.88■□□□□ 0.29
CLN3-216ENST00000565316 SRPK1Q96SB4 655 aaKnown RBP16.88■□□□□ 0.29
CLN3-216ENST00000565316 CHP1Q99653 195 aa16.88■□□□□ 0.29
CLN3-216ENST00000565316 TIMM29Q9BSF4 260 aa16.88■□□□□ 0.29
CLN3-216ENST00000565316 GPR63Q9BZJ6 419 aa16.88■□□□□ 0.29
CLN3-216ENST00000565316 APMAPQ9HDC9 416 aa16.88■□□□□ 0.29
CLN3-216ENST00000565316 ZNHIT6Q9NWK9 470 aaKnown RBP16.88■□□□□ 0.29
CLN3-216ENST00000565316 SIDT1Q9NXL6 827 aaKnown RBP16.88■□□□□ 0.29
CLN3-216ENST00000565316 TUBD1Q9UJT1 453 aa16.88■□□□□ 0.29
CLN3-216ENST00000565316 TMPRSS11EQ9UL52 423 aa16.88■□□□□ 0.29
CLN3-216ENST00000565316 KMOO15229 486 aa16.87■□□□□ 0.29
CLN3-216ENST00000565316 VEGFDO43915 354 aa16.87■□□□□ 0.29
CLN3-216ENST00000565316 DLGAP3O95886 979 aa16.87■□□□□ 0.29
CLN3-216ENST00000565316 ZNF7P17097 686 aaPredicted RBP16.87■□□□□ 0.29
CLN3-216ENST00000565316 SLC19A1P41440 591 aa16.87■□□□□ 0.29
CLN3-216ENST00000565316 MAPK9P45984 424 aa16.87■□□□□ 0.29
CLN3-216ENST00000565316 ABHD18Q0P651 414 aa16.87■□□□□ 0.29
CLN3-216ENST00000565316 PRKD1Q15139 912 aaPredicted RBP16.87■□□□□ 0.29
CLN3-216ENST00000565316 TAZQ16635 292 aa16.87■□□□□ 0.29
CLN3-216ENST00000565316 WASH2PQ6VEQ5 465 aa16.87■□□□□ 0.29
CLN3-216ENST00000565316 LRRTM4Q86VH4 590 aa16.87■□□□□ 0.29
CLN3-216ENST00000565316 ZNF547Q8IVP9 402 aa16.87■□□□□ 0.29
CLN3-216ENST00000565316 SPATA22Q8NHS9 363 aa16.87■□□□□ 0.29
CLN3-216ENST00000565316 TEKT5Q96M29 485 aa16.87■□□□□ 0.29
CLN3-216ENST00000565316 EFHD1Q9BUP0 239 aa16.87■□□□□ 0.29
CLN3-216ENST00000565316 TRIT1Q9H3H1 467 aaKnown RBP16.87■□□□□ 0.29
CLN3-216ENST00000565316 WASH6PQ9NQA3 447 aa16.87■□□□□ 0.29
CLN3-216ENST00000565316 ABHD10Q9NUJ1 306 aa16.87■□□□□ 0.29
CLN3-216ENST00000565316 DDX56Q9NY93 547 aaKnown RBP16.87■□□□□ 0.29
CLN3-216ENST00000565316 ZNF624Q9P2J8 865 aaPredicted RBP16.87■□□□□ 0.29
CLN3-216ENST00000565316 SPO11Q9Y5K1 396 aa16.87■□□□□ 0.29
CLN3-216ENST00000565316 LOC101059948A0A1B0GTJ6 334 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 TOX3O15405 576 aaPredicted RBP16.86■□□□□ 0.29
CLN3-216ENST00000565316 CBFA2T2O43439 604 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 STK17BO94768 372 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 MT-CYBP00156 380 aaPredicted RBP16.86■□□□□ 0.29
CLN3-216ENST00000565316 KRT1P04264 644 aa16.86■□□□□ 0.29
CLN3-216ENST00000565316 PTPN3P26045 913 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms