RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ARCN1P48444 511 aaKnown RBP9.17□□□□□ -0.94
VPS39-205ENST00000562258 PRIM2P49643 509 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 PGGT1BP53609 377 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 SLC7A9P82251 487 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 SATB1Q01826 763 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 WASHC5Q12768 1159 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 HYAL1Q12794 435 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 TSNQ15631 228 aaKnown RBP9.17□□□□□ -0.94
VPS39-205ENST00000562258 OASLQ15646 514 aaKnown RBP9.17□□□□□ -0.94
VPS39-205ENST00000562258 MINDY4Q4G0A6 757 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 IRAK1BP1Q5VVH5 260 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 FSTL4Q6MZW2 842 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 KLHL35Q6PF15 583 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 USP53Q70EK8 1073 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 HTR3DQ70Z44 454 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 FKBP9P1Q75LS8 142 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 C17orf64Q86WR6 236 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 FAM129CQ86XR2 697 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 VN1R2Q8NFZ6 395 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 FGF14Q92915 247 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 TRMT2BQ96GJ1 504 aaKnown RBP9.17□□□□□ -0.94
VPS39-205ENST00000562258 APOPT1Q96IL0 206 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 SOX13Q9UN79 622 aa9.17□□□□□ -0.94
VPS39-205ENST00000562258 NEMP2A6NFY4 417 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 RNGTTO60942 597 aaKnown RBP9.16□□□□□ -0.94
VPS39-205ENST00000562258 H2AFXP16104 143 aaPredicted RBP9.16□□□□□ -0.94
VPS39-205ENST00000562258 SLC1A2P43004 574 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 TGM3Q08188 693 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 NIPAL4Q0D2K0 466 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 CNTN1Q12860 1018 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 INO80DQ53TQ3 878 aaPredicted RBP9.16□□□□□ -0.94
VPS39-205ENST00000562258 WDR45BQ5MNZ6 344 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 ZBTB2Q8N680 514 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 ATL1Q8WXF7 558 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 WBP2Q969T9 261 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 ASB16Q96NS5 453 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 TXLNGQ9NUQ3 528 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 AURKCQ9UQB9 309 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 NME7Q9Y5B8 376 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 TNFRSF10BO14763 440 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 SEMA4FO95754 770 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 DRD1P21728 446 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 PREPP48147 710 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 SLC1A6P48664 564 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 SEPHS1P49903 392 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 CLDN2P57739 230 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 QPCTQ16769 361 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 GPRC6AQ5T6X5 926 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 C1orf53Q5VUE5 145 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 LYPLAL1Q5VWZ2 237 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 PAQR3Q6TCH7 311 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 ZNF438Q7Z4V0 828 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 CNTD1Q8N815 330 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 KHSRPQ92945 711 aaKnown RBP eCLIP9.16□□□□□ -0.94
VPS39-205ENST00000562258 TSACCQ96A04 125 aaPredicted RBP9.16□□□□□ -0.94
VPS39-205ENST00000562258 RERGQ96A58 199 aaPredicted RBP9.16□□□□□ -0.94
VPS39-205ENST00000562258 SERPINI1Q99574 410 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 SLC6A17Q9H1V8 727 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 SRMSQ9H3Y6 488 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 ZNF358Q9NW07 568 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 AHSPQ9NZD4 102 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 ARID1BQ8NFD5 2236 aaPredicted RBP9.16□□□□□ -0.94
VPS39-205ENST00000562258 EVPLLA8MZ36 301 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 ULK1O75385 1050 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 ALPPL2P10696 532 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 CTHP32929 405 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 SGSHP51688 502 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 AGKQ53H12 422 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 PHC3Q8NDX5 983 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 CATSPER2Q96P56 530 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 RAB3IPQ96QF0 476 aaPredicted RBP9.16□□□□□ -0.94
VPS39-205ENST00000562258 MRPL1Q9BYD6 325 aaKnown RBP9.16□□□□□ -0.94
VPS39-205ENST00000562258 C6orf203Q9P0P8 240 aaPredicted RBP9.16□□□□□ -0.94
VPS39-205ENST00000562258 RAB21Q9UL25 225 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 SLC7A4O43246 635 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 LDB2O43679 373 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 DYRK3O43781 588 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 PGLSO95336 258 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 HPGDP15428 266 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 GRK2P25098 689 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 EEF1DP29692 281 aaKnown RBP9.16□□□□□ -0.94
VPS39-205ENST00000562258 GRIA4P48058 902 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 HPCAP84074 193 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 PKDCCQ504Y2 493 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 RAB41Q5JT25 222 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 PHF19Q5T6S3 580 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 C1orf146Q5VVC0 180 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 ZDHHC20Q5W0Z9 365 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 KLHDC10Q6PID8 442 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 PIWIL4Q7Z3Z4 852 aaKnown RBP9.16□□□□□ -0.94
VPS39-205ENST00000562258 SNX20Q7Z614 316 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 NCSTNQ92542 709 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 HSPA12BQ96MM6 686 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 BBS4Q96RK4 519 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 VCXQ9H320 206 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 TMEM245Q9H330 911 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 SPATS2LQ9NUQ6 558 aaKnown RBP9.16□□□□□ -0.94
VPS39-205ENST00000562258 TIMM22Q9Y584 194 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 PCDHB1Q9Y5F3 818 aa9.16□□□□□ -0.94
VPS39-205ENST00000562258 KIAA1217Q5T5P2 1943 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms