RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 TMEM25Q86YD3 366 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 CAMK1DQ8IU85 385 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 PHYKPLQ8IUZ5 450 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 TMEM151AQ8N4L1 468 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 PCYOX1LQ8NBM8 494 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 TXNDC5Q8NBS9 432 aaKnown RBP7.45□□□□□ -1.22
VPS39-204ENST00000561818 PDPRQ8NCN5 879 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 CD200R1Q8TD46 325 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 NXPE3Q969Y0 559 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 ELSPBP1Q96BH3 223 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 ZNF707Q96C28 371 aaPredicted RBP7.45□□□□□ -1.22
VPS39-204ENST00000561818 PTCD3Q96EY7 689 aaKnown RBP7.45□□□□□ -1.22
VPS39-204ENST00000561818 HIST1H2AHQ96KK5 128 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 BIRC8Q96P09 236 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 ATOH8Q96SQ7 321 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 ZNF382Q96SR6 550 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 HIST1H2AJQ99878 128 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 RTKNQ9BST9 563 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 H2AFJQ9BTM1 129 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 SLC25A23Q9BV35 468 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 C1QTNF7Q9BXJ2 289 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 CIPCQ9C0C6 399 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 ZDHHC6Q9H6R6 413 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 ALG9Q9H6U8 611 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 DCLRE1BQ9H816 532 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 BRD9Q9H8M2 597 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 ELOVL2Q9NXB9 296 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 UTP6Q9NYH9 597 aaKnown RBP7.45□□□□□ -1.22
VPS39-204ENST00000561818 GTSE1Q9NYZ3 720 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 MARCH4Q9P2E8 410 aaPredicted RBP7.45□□□□□ -1.22
VPS39-204ENST00000561818 EPS15L1Q9UBC2 864 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 MARCOQ9UEW3 520 aaPredicted RBP7.45□□□□□ -1.22
VPS39-204ENST00000561818 MAPRE3Q9UPY8 281 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 AP3M1Q9Y2T2 418 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 OARD1Q9Y530 152 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 SPO11Q9Y5K1 396 aa7.45□□□□□ -1.22
VPS39-204ENST00000561818 C15orf38-AP3S2A0A0A6YYH1 394 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 PER2O15055 1255 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 UGDHO60701 494 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 DNAJA2O60884 412 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 FKBP6O75344 327 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 WDR47O94967 919 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 PRAMEF12O95522 483 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 ESRRBO95718 433 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 NPPAP01160 153 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 SLC4A1P02730 911 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 CYP17A1P05093 508 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 RPS17P08708 135 aaKnown RBP7.44□□□□□ -1.22
VPS39-204ENST00000561818 ANXA5P08758 320 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 UROSP10746 265 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 IDO1P14902 403 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 ACPPP15309 386 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 CEBPBP17676 345 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 NCF2P19878 526 aaPredicted RBP7.44□□□□□ -1.22
VPS39-204ENST00000561818 CYP2A7P20853 494 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 TEAD1P28347 426 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 FMO4P31512 558 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 HNF1BP35680 557 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 ELF3P78545 371 aaPredicted RBP7.44□□□□□ -1.22
VPS39-204ENST00000561818 GTF2H3Q13889 308 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 CYLC2Q14093 348 aaPredicted RBP7.44□□□□□ -1.22
VPS39-204ENST00000561818 MAP7Q14244 749 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 HNRNPA1L2Q32P51 320 aaKnown RBP7.44□□□□□ -1.22
VPS39-204ENST00000561818 HSF5Q4G112 596 aaPredicted RBP7.44□□□□□ -1.22
VPS39-204ENST00000561818 DGKKQ5KSL6 1271 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 LCE2DQ5TA82 110 aaPredicted RBP7.44□□□□□ -1.22
VPS39-204ENST00000561818 LRRC66Q68CR7 880 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 OGFOD2Q6N063 350 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 ZNF549Q6P9A3 640 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 CRTC1Q6UUV9 634 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 LPCAT2Q7L5N7 544 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 LRRC70Q7Z2Q7 622 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 NET1Q7Z628 596 aaPredicted RBP7.44□□□□□ -1.22
VPS39-204ENST00000561818 ARPINQ7Z6K5 226 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 RNF135Q8IUD6 432 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 MFSD6LQ8IWD5 586 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 NPAS3Q8IXF0 933 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 ETFBKMTQ8IXQ9 262 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 ZBTB2Q8N680 514 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 ZNF781Q8N8C0 355 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 PTGR2Q8N8N7 351 aaPredicted RBP7.44□□□□□ -1.22
VPS39-204ENST00000561818 DDHD1Q8NEL9 900 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 OR2A12Q8NGT7 310 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 DNAJB8Q8NHS0 232 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 WFDC5Q8TCV5 224 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 FRS2Q8WU20 508 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 UBTD2Q8WUN7 234 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 ASZ1Q8WWH4 475 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 DLG3Q92796 817 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 FUBP1Q96AE4 644 aaKnown RBP7.44□□□□□ -1.22
VPS39-204ENST00000561818 C19orf60Q96EN9 201 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 LINGO1Q96FE5 620 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 METTL2AQ96IZ6 378 aaKnown RBP7.44□□□□□ -1.22
VPS39-204ENST00000561818 FOPNLQ96NB1 174 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 GPR21Q99679 349 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 FAM83CQ9BQN1 747 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 CCDC106Q9BWC9 280 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 TBC1D10AQ9BXI6 508 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 SLC29A3Q9BZD2 475 aa7.44□□□□□ -1.22
VPS39-204ENST00000561818 FAM83DQ9H4H8 585 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms