RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 GATAD2AQ86YP4 633 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 TBC1D21Q8IYX1 336 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 RSPH1Q8WYR4 309 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 SMOQ99835 787 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 TUBB1Q9H4B7 451 aa11.26□□□□□ -0.61
LDLR-208ENST00000558518 RCOR3Q9P2K3 495 aaPredicted RBP11.26□□□□□ -0.61
LDLR-208ENST00000558518 SH3BGRLO75368 114 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 FCGR1AP12314 374 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 ZNF24P17028 368 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 EFNA1P20827 205 aaPredicted RBP11.25□□□□□ -0.61
LDLR-208ENST00000558518 BNIP2Q12982 314 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 TRIM32Q13049 653 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 C18orf21Q32NC0 220 aaPredicted RBP11.25□□□□□ -0.61
LDLR-208ENST00000558518 SV2CQ496J9 727 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 AASDHQ4L235 1098 aaPredicted RBP11.25□□□□□ -0.61
LDLR-208ENST00000558518 INTS11Q5TA45 600 aaKnown RBP11.25□□□□□ -0.61
LDLR-208ENST00000558518 PAQR3Q6TCH7 311 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 C2CD4AQ8NCU7 369 aaPredicted RBP11.25□□□□□ -0.61
LDLR-208ENST00000558518 RAB2BQ8WUD1 216 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 ISL2Q96A47 359 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 ROPN1LQ96C74 230 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 SH3YL1Q96HL8 342 aaPredicted RBP11.25□□□□□ -0.61
LDLR-208ENST00000558518 NODALQ96S42 347 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 GAD1Q99259 594 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 ADGRE2Q9UHX3 823 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 POLR3HQ9Y535 204 aaPredicted RBP11.25□□□□□ -0.61
LDLR-208ENST00000558518 ORC6Q9Y5N6 252 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 ACTL7AQ9Y615 435 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 AQP9O43315 295 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 GLP2RO95838 553 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 OR4Q2P0C623 313 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 SLC2A3P11169 496 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 HOXA11P31270 313 aaPredicted RBP11.25□□□□□ -0.61
LDLR-208ENST00000558518 GALNT2Q10471 571 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 ZNF846Q147U1 533 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 ZNF484Q5JVG2 852 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 DPP9Q86TI2 863 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 RIOX2Q8IUF8 465 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 SPARTQ8N0X7 666 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 MCOLN3Q8TDD5 553 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 CHPT1Q8WUD6 406 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 MRGPRX2Q96LB1 330 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 ALPK1Q96QP1 1244 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 HNRNPABQ99729 332 aaKnown RBP11.25□□□□□ -0.61
LDLR-208ENST00000558518 PAAF1Q9BRP4 392 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 APOL5Q9BWW9 433 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 CRTAC1Q9NQ79 661 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 HPS4Q9NQG7 708 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 HACD3Q9P035 362 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 SPATA7Q9P0W8 599 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 EIF2B4Q9UI10 523 aaKnown RBP11.25□□□□□ -0.61
LDLR-208ENST00000558518 ARID2Q68CP9 1835 aa11.25□□□□□ -0.61
LDLR-208ENST00000558518 NDUFS2O75306 463 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 SLC2A4P14672 509 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 HK2P52789 917 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 HERVK_113P63132 956 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 DAG1Q14118 895 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 ACAP2Q15057 778 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 SMN1Q16637 294 aaKnown RBP11.24□□□□□ -0.61
LDLR-208ENST00000558518 PAQR9Q6ZVX9 377 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 DET1Q7L5Y6 550 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 DCP1BQ8IZD4 617 aaKnown RBP11.24□□□□□ -0.61
LDLR-208ENST00000558518 ZNF420Q8TAQ5 688 aaPredicted RBP11.24□□□□□ -0.61
LDLR-208ENST00000558518 METTL6Q8TCB7 284 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 TRUB1Q8WWH5 349 aaKnown RBP11.24□□□□□ -0.61
LDLR-208ENST00000558518 TOP1MTQ969P6 601 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 TMEM125Q96AQ2 219 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 FEM1CQ96JP0 617 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 DMRTB1Q96MA1 342 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 ERVK-6Q9BXR3 956 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 REXO4Q9GZR2 422 aaKnown RBP11.24□□□□□ -0.61
LDLR-208ENST00000558518 FAM8A1Q9UBU6 413 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 AFF4Q9UHB7 1163 aaKnown RBP11.24□□□□□ -0.61
LDLR-208ENST00000558518 ZNHIT2Q9UHR6 403 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 PTBP2Q9UKA9 531 aaKnown RBP11.24□□□□□ -0.61
LDLR-208ENST00000558518 FAM32AQ9Y421 112 aaKnown RBP11.24□□□□□ -0.61
LDLR-208ENST00000558518 SNX8Q9Y5X2 465 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 IQCF5A8MTL0 148 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 GPR39O43194 453 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 RECQL5O94762 991 aaPredicted RBP11.24□□□□□ -0.61
LDLR-208ENST00000558518 KRT75O95678 551 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 POMCP01189 267 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 AXLP30530 894 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 GRIK1P39086 918 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 MRPS15P82914 257 aaKnown RBP11.24□□□□□ -0.61
LDLR-208ENST00000558518 CREB5Q02930 508 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 CD47Q08722 323 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 EPS8Q12929 822 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 PTPRRQ15256 657 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 PSMD5Q16401 504 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 RSBN1Q5VWQ0 802 aaPredicted RBP11.24□□□□□ -0.61
LDLR-208ENST00000558518 ANKS6Q68DC2 871 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 TAS2R42Q7RTR8 314 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 C14orf80Q86SX3 495 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 DTWD1Q8N5C7 304 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 MFSD2AQ8NA29 543 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 CALML6Q8TD86 181 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 ADAMTS10Q9H324 1103 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 ENTPD7Q9NQZ7 604 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 TUBA8Q9NY65 449 aaPredicted RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms