RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 ZNF99A8MXY4 864 aaPredicted RBP10.82□□□□□ -0.68
USP3-206ENST00000558157 MTSS1O43312 755 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 MTRF1O75570 445 aaKnown RBP10.82□□□□□ -0.68
USP3-206ENST00000558157 KCNK2O95069 426 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 CXCL10P02778 98 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 POLD2P49005 469 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 CLK3P49761 638 aaKnown RBP10.82□□□□□ -0.68
USP3-206ENST00000558157 TAF6P49848 677 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 IRF9Q00978 393 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 FCHO2Q0JRZ9 810 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 DUSP7Q16829 419 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 COQ5Q5HYK3 327 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 CLLU1OSQ5K130 101 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 MICAL3Q7RTP6 2002 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 PTRH1Q86Y79 214 aaKnown RBP10.82□□□□□ -0.68
USP3-206ENST00000558157 SNX29P2Q8IUI4 249 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 TWNKQ96RR1 684 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 DSN1Q9H410 356 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 DHX35Q9H5Z1 703 aaKnown RBP10.82□□□□□ -0.68
USP3-206ENST00000558157 TM9SF3Q9HD45 589 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 SYBUQ9NX95 663 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 PCDH10Q9P2E7 1040 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 ANAPC2Q9UJX6 822 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 RABL2BQ9UNT1 228 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 MAU2Q9Y6X3 613 aa10.82□□□□□ -0.68
USP3-206ENST00000558157 TARM1B6A8C7 271 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 NME4O00746 187 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 ENPP3O14638 875 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 CILPO75339 1184 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 DLGAP3O95886 979 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 IGFBP6P24592 240 aaPredicted RBP10.81□□□□□ -0.68
USP3-206ENST00000558157 PNPLA4P41247 253 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 FAM189BP81408 668 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 MAPK11Q15759 364 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 CRY1Q16526 586 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 SV2CQ496J9 727 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 CDONQ4KMG0 1287 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 C6orf141Q5SZD1 244 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 ZCCHC8Q6NZY4 707 aaKnown RBP10.81□□□□□ -0.68
USP3-206ENST00000558157 SLC51BQ86UW2 128 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 LSMEM1Q8N8F7 131 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 POC5Q8NA72 575 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 OR6F1Q8NGZ6 308 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 HTRA1Q92743 480 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 MRPL45Q9BRJ2 306 aaKnown RBP10.81□□□□□ -0.68
USP3-206ENST00000558157 MCMBPQ9BTE3 642 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 C1QTNF1Q9BXJ1 281 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 ASPSCR1Q9BZE9 553 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 ELOVL4Q9GZR5 314 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 ADNPQ9H2P0 1102 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 RUBCNLQ9H714 662 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 EML4Q9HC35 981 aaKnown RBP10.81□□□□□ -0.68
USP3-206ENST00000558157 CYTH4Q9UIA0 394 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 A3GALT2U3KPV4 340 aa10.81□□□□□ -0.68
USP3-206ENST00000558157 C2CD4BA6NLJ0 364 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 TK2O00142 265 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 ARPC2O15144 300 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 B4GAT1O43505 415 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 KATNA1O75449 491 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 NDST3O95803 873 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 EOMESO95936 686 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 SBK3P0C264 359 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 PCMT1P22061 227 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 CLCNKBP51801 687 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 ARSFP54793 590 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 SESN2P58004 480 aaPredicted RBP10.8□□□□□ -0.68
USP3-206ENST00000558157 INCA1Q0VD86 236 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 CEP78Q5JTW2 689 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 UBE2UQ5VVX9 321 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 TMEM135Q86UB9 458 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 CCDC28AQ8IWP9 274 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 KIAA1958Q8N8K9 716 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 PSMA8Q8TAA3 256 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 MFSD3Q96ES6 412 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 NODALQ96S42 347 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 PAAF1Q9BRP4 392 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 CHID1Q9BWS9 393 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 MMP27Q9H306 513 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 EPS8L2Q9H6S3 715 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 PRDM5Q9NQX1 630 aaPredicted RBP10.8□□□□□ -0.68
USP3-206ENST00000558157 POLE4Q9NR33 117 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 KCNN3Q9UGI6 736 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 CAB39Q9Y376 341 aaPredicted RBP10.8□□□□□ -0.68
USP3-206ENST00000558157 ZSCAN5BA6NJL1 495 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 CENPXA8MT69 81 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 H0Y858 1186 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 DPYSL4O14531 572 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 TOR1BO14657 336 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 INPPL1O15357 1258 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 TPST1O60507 370 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 CCDC159P0C7I6 412 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 THRBP10828 461 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 ACVR2AP27037 513 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 SHMT2P34897 504 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 KPNA2P52292 529 aaKnown RBP10.8□□□□□ -0.68
USP3-206ENST00000558157 NDST1P52848 882 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 GP2P55259 537 aaKnown RBP10.8□□□□□ -0.68
USP3-206ENST00000558157 MRPS15P82914 257 aaKnown RBP10.8□□□□□ -0.68
USP3-206ENST00000558157 GALNT1Q10472 559 aaPredicted RBP10.8□□□□□ -0.68
USP3-206ENST00000558157 SLC13A2Q13183 592 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms